The Wikipedia text that you see displayed on our web site was retrieved from Wikipedia. This means that the information we display is a copy of the information from the Wikipedia database. The button above ("Edit wikipedia entry") takes you to the edit page for the article directly within Wikipedia.

Before you edit for the first time

Wikipedia is a free, online encyclopedia. Although anyone can edit or contribute to an article, Wikipedia has some strong editing guidelines and policies, which promote the Wikipedia standard of style and etiquette. Your edits and contributions are more likely to be accepted (and remain) if they are in accordance with this policy.

You should take a few minutes to view the following pages:

• Five pillars
• Policies and quidelines
• Wikipedia help contents
• Wikipedia Tips
• Editing help

Things you should know

How your contribution will be recorded

Anyone can edit a Wikipedia entry. You can do this either as a new user or you can register with Wikipedia and log on. When you click on the "Edit Wikipedia entry" button, your browser will direct you to the edit page for this entry in Wikipedia. If you are a registered user and currently logged in, your changes will be recorded under your Wikipedia user name. However, if you are not a registered user or are not logged on, your changes will be logged under your computer’s IP address. This has two main implications. Firstly, as a registered Wikipedia user your edits are more likely seen as valuable contribution (although all edits are open to community scrutiny regardless). Secondly, if you edit under an IP address you may be sharing this IP address with other users. If your IP address has previously been blocked (due to being flagged as a source of 'vandalism') your edits will also be blocked. You can find more information on this and creating a user account at Wikipedia.

If you have problems editing a particular page, contact us at rfam-help@ebi.ac.uk and we will try to help.

Information we would like to see added

We would value contributions that are referenced directly to the primary literature. Information on structure and function will be especially valuable.

Adding references is explained by this Wikipedia how-to article.

For a good example of what is possible in wikipedia, look at the Hammerhead Ribozyme entry.

Does Rfam agree with the content of the Wikipedia entry ?

Rfam has chosen to create Wikipedia entries for all of our RNA families and to open them up to community annotation. While the original Wikipedia article that we import was (in most cases) generated from Rfam annotations, the Wikipedia article you see now may bear little resemblance to that original text. The Wikipedia community does monitor edits to try to ensure that (a) the quality of article annotation increases, and (b) vandalism is very quickly dealt with. However, we would like to emphasise that Rfam does not curate the Wikipedia entries and we cannot guarantee the accuracy of the information on the Wikipedia page.

Contact us

If you have problems editing or experience problems with these pages please contact us.

If you are interested in contributing to a wide range of articles relating to RNA, see the Wikiproject RNA page.

Quick actions

Download all sequences Download table

Browse in Rfam Browse in RNAcentral

Table preview (300 out of 680 sequence regions)

Original order	Download FASTA	Accession	Bit score	Type	Start	End	Description	Species	View context
0		URS000068196F_9606	N/A	seed	2	72	Homo sapiens (human) microRNA hsa-mir-451a precursor	Homo sapiens (human)
1		URS00006E6286_9544	N/A	seed	2	72	Macaca mulatta (Rhesus monkey) microRNA mml-mir-451 precursor	Macaca mulatta (Rhesus monkey)
2		URS000075C2E3_9598	N/A	seed	1	71	Pan troglodytes (chimpanzee) microRNA ptr-mir-451 precursor	Pan troglodytes (chimpanzee)
3		URS000068196F_9600	N/A	seed	2	72	Pongo pygmaeus (Bornean orangutan) microRNA ppy-mir-451 precursor	Pongo pygmaeus (Bornean orangutan)
4		URS00007E4F6D_9615	N/A	seed	1	69	Canis lupus familiaris (dog) microRNA cfa-mir-451 precursor	Canis lupus familiaris (dog)
5		URS00006A00CC_9796	N/A	seed	2	72	Equus caballus (horse) microRNA eca-mir-451 precursor	Equus caballus (horse)
6		URS000075B356_9913	N/A	seed	1	71	Bos taurus (cattle) microRNA bta-mir-451 precursor	Bos taurus (cattle)
7		URS000075B356_9925	N/A	seed	1	71	Capra hircus (goat) microRNA chi-mir-451 precursor	Capra hircus (goat)
8		URS000075DBF7_9823	N/A	seed	1	65	Sus scrofa (pig) microRNA ssc-mir-451 precursor	Sus scrofa (pig)
9		URS000075A016_9606	N/A	seed	1	68	Homo sapiens (human) microRNA hsa-mir-451b precursor	Homo sapiens (human)
10		URS00006F8327_10090	N/A	seed	2	72	Mus musculus (house mouse) microRNA mmu-mir-451b precursor	Mus musculus (house mouse)
11		URS0000A8158F_7757	N/A	seed	2	72	Petromyzon marinus (sea lamprey) microRNA pma-mir-451 precursor	Petromyzon marinus (sea lamprey)
12		URS000062EC78_10090	N/A	seed	2	72	Mus musculus (house mouse) microRNA mmu-mir-451a precursor	Mus musculus (house mouse)
13		URS000065651B_10116	N/A	seed	2	72	Rattus norvegicus (Norway rat) microRNA rno-mir-451 precursor	Rattus norvegicus (Norway rat)
14		URS000075EBD6_8364	N/A	seed	1	62	Xenopus tropicalis (tropical clawed frog) microRNA xtr-mir-451 precursor	Xenopus (Silurana) tropicalis (western clawed frog)
15		URS000075EA78_9258	N/A	seed	9	79	Ornithorhynchus anatinus (platypus) microRNA oan-mir-451 precursor	Ornithorhynchus anatinus (platypus)
16		URS000075D4E1_13616	N/A	seed	1	62	Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-451 precursor	Monodelphis domestica (gray short-tailed opossum)
17		URS000075A76D_9031	N/A	seed	3	69	Gallus gallus (chicken) microRNA gga-mir-451 precursor	Gallus gallus (chicken)
18		URS000075AC9E_59729	N/A	seed	1	65	Taeniopygia guttata (zebra finch) microRNA tgu-mir-451 precursor	Taeniopygia guttata
19		URS000075ABCC_7955	N/A	seed	1	60	Danio rerio (zebrafish) microRNA dre-mir-451 precursor	Danio rerio (zebrafish)
20		URS0000D50033_28377	N/A	seed	3	73	Anolis carolinensis (green anole) microRNA aca-mir-451 precursor	Anolis carolinensis (green anole)
21		URS0000D548C5_8665	N/A	seed	1	59	Ophiophagus hannah (king cobra) microRNA oha-mir-451 precursor	Ophiophagus hannah (king cobra)
0		CM001665.1	96.30	full	39,685,168	39,685,238	Nomascus leucogenys chromosome 19, whole genome shotgun sequence.	Nomascus leucogenys (Northern white-cheeked gibbon)
1		NC_045804.1	96.20	full	43,953,890	43,953,820	NC_045804.1 Balaenoptera musculus isolate JJ_BM4_2016_0621 chromosome 20, mBalMus1.pri.v3, whole genome shotgun sequence	Balaenoptera musculus (Blue whale)
2		NTJE010216505.1	96.20	full	1,961	2,031	NTJE010216505.1 Eschrichtius robustus isolate AM-GW-M-EMB-4M-20130531 contig_240254, whole genome shotgun sequence	Eschrichtius robustus (grey whale)
3		SGJD01000982.1	96.20	full	568,035	567,965	SGJD01000982.1 Balaenoptera physalus isolate FinWhale-01 scaffold1181, whole genome shotgun sequence	Balaenoptera physalus (Fin whale)
4		VOAJ01024660.1	96.20	full	4,708,973	4,709,043	VOAJ01024660.1 Crocuta crocuta isolate KB4526 scaffold149, whole genome shotgun sequence	Crocuta crocuta (spotted hyena)
5		CM000331.3	96.10	full	28,309,651	28,309,721	Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 17, whole genome shotgun sequence.	Pan troglodytes (chimpanzee)
6		CM000679.2	96.10	full	28,861,439	28,861,369	Homo sapiens chromosome 17, GRCh38 reference primary assembly.	Homo sapiens (human)
7		CM003400.1	96.10	full	28,421,757	28,421,827	CM003400.1 Pan paniscus isolate Ulindi chromosome 17, whole genome shotgun sequence	Pan paniscus (pygmy chimpanzee)
8		CM009279.2	96.10	full	21,180,393	21,180,323	CM009279.2 Pongo abelii isolate Susie chromosome 17, whole genome shotgun sequence	Pongo abelii (Sumatran orangutan)
9		FR853098.3	96.10	full	54,634,471	54,634,541	Gorilla gorilla gorilla genomic chromosome, chr5, whole genome shotgun sequence	Gorilla gorilla gorilla (western lowland gorilla)
10		CM019255.1	96.00	full	23,416,522	23,416,452	CM019255.1 Piliocolobus tephrosceles isolate RC106 chromosome 16, whole genome shotgun sequence	Piliocolobus tephrosceles (Ugandan red Colobus)
11		KN297930.1	96.00	full	126,532	126,462	KN297930.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG038483, whole genome shotgun sequence	Rhinopithecus roxellana (golden snub-nosed monkey)
12		KN980418.1	96.00	full	1,151,627	1,151,557	KN980418.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold193, whole genome shotgun sequence	Colobus angolensis palliatus
13		MCGX01013867.1	96.00	full	1,812,021	1,812,091	MCGX01013867.1 Rhinopithecus bieti isolate Rb0 scaffold_38691, whole genome shotgun sequence	Rhinopithecus bieti (Black snub-nosed monkey)
14		CM021919.1	95.80	full	100,804,476	100,804,546	CM021919.1 Callithrix jacchus isolate mCalJac1 chromosome 5, whole genome shotgun sequence	Callithrix jacchus (white-tufted-ear marmoset)
15		KV389566.1	95.80	full	491,075	491,005	KV389566.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold140, whole genome shotgun sequence	Cebus imitator (Panamanian white-faced capuchin)
16		KZ198077.1	95.80	full	5,479,463	5,479,533	KZ198077.1 Aotus nancymaae isolate 86115 unplaced genomic scaffold Scaffold137.7, whole genome shotgun sequence	Aotus nancymaae (Ma's night monkey)
17		NW_022437598.1	95.80	full	29,828	29,898	NW_022437598.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold672, whole genome shotgun sequence	Cebus apella (Tufted capuchin)
18		NW_022437599.1	95.80	full	29,770	29,840	NW_022437599.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold673, whole genome shotgun sequence	Cebus apella (Tufted capuchin)
19		JH378149.1	95.60	full	14,817,153	14,817,083	JH378149.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00045, whole genome shotgun sequence	Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
20		CM018175.1	95.40	full	15,667,431	15,667,501	CM018175.1 Phocoena sinus isolate mPhoSin1 chromosome 20, whole genome shotgun sequence	Phocoena sinus (vaquita)
21		NC_041227.1	95.40	full	94,658,564	94,658,634	NC_041227.1 Physeter catodon isolate SW-GA chromosome 14, ASM283717v5, whole genome shotgun sequence	Physeter catodon (sperm whale)
22		NC_047053.1	95.40	full	15,535,804	15,535,874	NC_047053.1 Tursiops truncatus isolate mTurTru1 chromosome 20, mTurTru1.mat.Y, whole genome shotgun sequence	Tursiops truncatus (bottlenosed dolphin)
23		NW_006779100.1	95.40	full	3,058,773	3,058,703	NW_006779100.1 Lipotes vexillifer unplaced genomic scaffold, Lipotes_vexillifer_v1 scaffold216, whole genome shotgun sequence	Lipotes vexillifer (Yangtze River dolphin)
24		NW_020172446.1	95.40	full	3,911,392	3,911,322	NW_020172446.1 Neophocaena asiaeorientalis asiaeorientalis breed wild unplaced genomic scaffold, Neophocaena_asiaeorientalis_V1 scaffold129, whole genome shotgun sequence	Neophocaena asiaeorientalis asiaeorientalis (yangtze finless porpoise)
25		NW_022098035.1	95.40	full	4,066,484	4,066,414	NW_022098035.1 Delphinapterus leucas isolate GAN/ISIS: 26980492/103006 unplaced genomic scaffold, ASM228892v3 scaffoldscaffold44, whole genome shotgun sequence	Delphinapterus leucas (beluga whale)
26		QWLN02015187.1	95.40	full	10,328,286	10,328,356	QWLN02015187.1 Sousa chinensis isolate MY-2018 scaffold20.1, whole genome shotgun sequence	Sousa chinensis (Indo-pacific humpbacked dolphin)
27		RWIC01001206.1	95.40	full	443,687	443,617	RWIC01001206.1 Monodon monoceros isolate MVW Scaffold1207, whole genome shotgun sequence	Monodon monoceros (narwhal)
28		CM000808.1	95.40	full	19,330,462	19,330,532	Oryctolagus cuniculus chromosome 19, whole genome shotgun sequence.	Oryctolagus cuniculus (rabbit)
29		NW_017731458.1	95.40	full	3,599,224	3,599,154	NW_017731458.1 Hipposideros armiger isolate ML-2016 unplaced genomic scaffold, ASM189008v1, whole genome shotgun sequence	Hipposideros armiger
30		JAGFMF010011578.1	94.70	full	2,576,208	2,576,278	JAGFMF010011578.1 Galemys pyrenaicus isolate IBE-C5619 2611258, whole genome shotgun sequence	Galemys pyrenaicus
31		CM022831.1	94.60	full	4,610,602	4,610,672	CM022831.1 Ailuropoda melanoleuca isolate Jingjing chromosome 13, whole genome shotgun sequence	Ailuropoda melanoleuca (giant panda)
32		CYRY02025977.1	94.60	full	109,812	109,742	CYRY02025977.1 Gulo gulo genome assembly, contig: scaffold3414, whole genome shotgun sequence	Gulo gulo (wolverine)
33		FNWR01000038.1	94.60	full	1,028,119	1,028,189	FNWR01000038.1 Neovison vison genome assembly, contig: scaffold38, whole genome shotgun sequence	Neovison vison
34		LZNR01001762.1	94.60	full	192,700	192,770	LZNR01001762.1 Ursus americanus isolate MABB319796 Contig1765, whole genome shotgun sequence	Ursus americanus (American black bear)
35		NW_004450362.1	94.60	full	2,830,535	2,830,465	NW_004450362.1 Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold, Oros_1.0 Scaffold99, whole genome shotgun sequence	Odobenus rosmarus divergens (Pacific walrus)
36		NW_019154110.1	94.60	full	4,552,083	4,552,153	NW_019154110.1 Enhydra lutris kenyoni isolate GAN:26980312 unplaced genomic scaffold, ASM228890v2 scaffoldscaffold26, whole genome shotgun sequence	Enhydra lutris kenyoni
37		NW_020313039.1	94.60	full	4,770,761	4,770,831	NW_020313039.1 Callorhinus ursinus isolate GAN/ISIS: 27379988/994484 unplaced genomic scaffold, ASM326570v1 scaffold318, whole genome shotgun sequence	Callorhinus ursinus (northern fur seal)
38		NW_025422106.1	94.60	full	21,071,118	21,071,048	NW_025422106.1 Mustela putorius furo isolate JIRA1106 unplaced genomic scaffold, ASM1176430v1.1 tig00003962_pilon_pilon_pilon, whole genome shotgun sequence	Mustela putorius furo (domestic ferret)
39		NC_058417.1	94.40	full	17,527,629	17,527,699	NC_058417.1 Neomonachus schauinslandi chromosome 15, ASM220157v2, whole genome shotgun sequence	Monachus schauinslandi (Hawaiian monk seal)
40		NW_006384301.1	94.40	full	778,418	778,488	NW_006384301.1 Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold, LepWed1.0 scaffold01261, whole genome shotgun sequence	Leptonychotes weddellii (Weddell seal)
41		CAJHUB010000649.1	94.00	full	24,981,632	24,981,562	CAJHUB010000649.1 Nyctereutes procyonoides isolate TBG_1078 genome assembly, contig: Nypro683, whole genome shotgun sequence	Nyctereutes procyonoides (raccoon dog)
42		CM025108.1	94.00	full	43,848,651	43,848,581	CM025108.1 Canis lupus familiaris isolate SID07034 breed Labrador retriever chromosome 9, whole genome shotgun sequence	Canis lupus familiaris (dog)
43		CM025465.1	94.00	full	44,225,487	44,225,417	CM025465.1 Canis lupus dingo isolate Sandy chromosome 9, whole genome shotgun sequence	Canis lupus dingo (dingo)
44		NW_020356556.1	94.00	full	2,255,314	2,255,244	NW_020356556.1 Vulpes vulpes strain TameXAggressive cross unplaced genomic scaffold, VulVul2.2 scaffold122, whole genome shotgun sequence	Vulpes vulpes (red fox)
45		CM009966.1	93.90	full	2,434,427	2,434,357	CM009966.1 Theropithecus gelada isolate Dixy chromosome 16, whole genome shotgun sequence	Theropithecus gelada (gelada baboon)
46		CM014351.1	93.90	full	24,498,011	24,497,941	CM014351.1 Macaca mulatta isolate AG07107 chromosome 16, whole genome shotgun sequence	Macaca mulatta (Rhesus monkey)
47		CM018196.1	93.90	full	21,861,643	21,861,573	CM018196.1 Papio anubis isolate 15944 chromosome 17, whole genome shotgun sequence	Papio anubis (Olive baboon)
48		CM021954.1	93.90	full	23,460,810	23,460,740	CM021954.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome 16, whole genome shotgun sequence	Macaca fascicularis (crab-eating macaque)
49		KN977667.1	93.90	full	73,863	73,933	KN977667.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold541, whole genome shotgun sequence	Mandrillus leucophaeus (drill)
50		KQ004731.1	93.90	full	2,800,302	2,800,232	KQ004731.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold111, whole genome shotgun sequence	Macaca nemestrina (pig-tailed macaque)
51		KQ010131.1	93.90	full	2,201,628	2,201,558	KQ010131.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold158, whole genome shotgun sequence	Cercocebus atys (sooty mangabey)
52		CM001592.2	93.30	full	19,829,575	19,829,505	Ovis aries breed Texel chromosome 11, whole genome shotgun sequence.	Ovis aries (sheep)
53		CM004580.1	93.30	full	20,067,942	20,067,872	CM004580.1 Capra hircus breed San Clemente chromosome 19, whole genome shotgun sequence	Capra hircus (goat)
54		CM008186.2	93.30	full	20,238,595	20,238,525	CM008186.2 Bos taurus isolate L1 Dominette 01449 registration number 42190680 breed Hereford chromosome 19, whole genome shotgun sequence	Bos taurus (cattle)
55		CM011792.1	93.30	full	20,190,947	20,190,877	CM011792.1 Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 19, whole genome shotgun sequence	Bos indicus x Bos taurus (hybrid cattle)
56		CM016708.1	93.30	full	48,772,278	48,772,348	CM016708.1 Bos grunniens isolate yakHY00 ecotype maiwa chromosome 19, whole genome shotgun sequence	Bos grunniens (domestic yak)
57		JH880403.1	93.30	full	317,734	317,664	JH880403.1 Bos grunniens mutus unplaced genomic scaffold scaffold136_1, whole genome shotgun sequence	Bos grunniens mutus
58		NC_032668.1	93.30	full	20,147,943	20,147,873	NC_032668.1 Bos indicus isolate QUIL7308 breed Nelore chromosome 19, Bos_indicus_1.0, whole genome shotgun sequence	Bos indicus
59		NW_011495033.1	93.30	full	3,802,491	3,802,561	NW_011495033.1 Bison bison bison isolate TAMUID 2011002044 unplaced genomic scaffold, Bison_UMD1.0 scf7180017864472, whole genome shotgun sequence	Bison bison bison (north american plains bison)
60		PVHU021072312.1	93.30	full	13,360,741	13,360,671	PVHU021072312.1 Moschus moschiferus isolate BS20 Scw3uUT_1114104;HRSCAF=1217625_2, whole genome shotgun sequence	Moschus moschiferus (Siberian musk deer)
61		MPIZ01000136.1	93.20	full	345,588	345,518	MPIZ01000136.1 Prolemur simus strain KIAN8.4 scaffold136, whole genome shotgun sequence	Prolemur simus (greater bamboo lemur)
62		CM000823.5	92.90	full	45,088,874	45,088,804	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 12, whole genome shotgun sequence.	Sus scrofa (pig)
63		PVHT020000004.1	92.90	full	3,875,492	3,875,562	PVHT020000004.1 Catagonus wagneri isolate BS18 Sc2sB16_4;HRSCAF=662, whole genome shotgun sequence	Catagonus wagneri (Chacoan peccary)
64		CAAGRJ010034232.1	92.50	full	437,219	437,149	CAAGRJ010034232.1 Lynx pardinus genome assembly, contig: lp23s15694, whole genome shotgun sequence	Lynx pardinus (Spanish lynx)
65		CM001391.3	92.50	full	17,972,612	17,972,682	Felis catus isolate Cinnamon breed Abyssinian chromosome E1, whole genome shotgun sequence.	Felis catus (domestic cat)
66		CM007676.1	92.50	full	44,597,767	44,597,697	CM007676.1 Microcebus murinus isolate mixed chromosome 16, whole genome shotgun sequence	Microcebus murinus (gray mouse lemur)
67		CM014246.1	92.50	full	18,658,017	18,658,087	CM014246.1 Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1 chromosome 21, whole genome shotgun sequence	Rhinolophus ferrumequinum (greater horseshoe bat)
68		CM017342.2	92.50	full	17,471,997	17,472,067	CM017342.2 Lynx canadensis isolate LIC74 chromosome E1, whole genome shotgun sequence	Lynx canadensis (Canada lynx)
69		CM018474.1	92.50	full	39,322,653	39,322,723	CM018474.1 Panthera leo isolate Brooke chromosome E2, whole genome shotgun sequence	Panthera leo (lion)
70		GL429924.1	92.50	full	1,679,474	1,679,404	Myotis lucifugus unplaced genomic scaffold scaffold_157, whole genome shotgun sequence.	Myotis lucifugus (little brown bat)
71		JABWUV010000017.1	92.50	full	32,342,616	32,342,546	JABWUV010000017.1 Myotis myotis isolate mMyoMyo1 scaffold_m19_p_17, whole genome shotgun sequence	Myotis myotis
72		JAULJE010000020.1	92.50	full	32,835,982	32,835,912	JAULJE010000020.1 Eptesicus nilssonii isolate BLF_Eptnil Scaffold_20, whole genome shotgun sequence	Eptesicus nilssoni (northern bat)
73		KB110620.1	92.50	full	745,810	745,740	KB110620.1 Myotis davidii unplaced genomic scaffold scaffold363, whole genome shotgun sequence	Myotis davidii
74		KB364719.1	92.50	full	598,745	598,675	KB364719.1 Tupaia chinensis unplaced genomic scaffold Scaffold143921_1, whole genome shotgun sequence	Tupaia chinensis (Chinese tree shrew)
75		KE163905.1	92.50	full	1,390,021	1,390,091	KE163905.1 Myotis brandtii unplaced genomic scaffold scaffold50, whole genome shotgun sequence	Myotis brandtii
76		KE721670.1	92.50	full	3,981,881	3,981,811	KE721670.1 Panthera tigris altaica isolate TaeGuk unplaced genomic scaffold scaffold1461, whole genome shotgun sequence	Panthera tigris altaica (Amur tiger)
77		KQ022414.1	92.50	full	504,124	504,194	KQ022414.1 Propithecus coquereli isolate 6110/MARCELLA unplaced genomic scaffold Scaffold281, whole genome shotgun sequence	Propithecus coquereli (Coquerel's sifaka)
78		NW_006408784.1	92.50	full	1,233,569	1,233,639	NW_006408784.1 Chrysochloris asiatica unplaced genomic scaffold, ChrAsi1.0 scaffold00266, whole genome shotgun sequence	Chrysochloris asiatica
79		NW_006921629.1	92.50	full	6,864,131	6,864,061	NW_006921629.1 Orycteropus afer afer isolate SDZICR_OR568_19922 unplaced genomic scaffold, OryAfe1.0 scaffold00042, whole genome shotgun sequence	Orycteropus afer afer
80		NW_020337979.1	92.50	full	4,908,410	4,908,480	NW_020337979.1 Puma concolor isolate SC36_Marlon unplaced genomic scaffold, PumCon1.0 scaffold_1052, whole genome shotgun sequence	Puma concolor (puma)
81		NW_020834766.1	92.50	full	21,448,946	21,448,876	NW_020834766.1 Acinonyx jubatus isolate Rico unplaced genomic scaffold, Aci_jub_2 Primary Assembly Aci_jub_2_ph1_scaffold40, whole genome shotgun sequence	Acinonyx jubatus (cheetah)
82		JACASE010000006.1	92.30	full	80,229,046	80,229,116	JACASE010000006.1 Rousettus aegyptiacus isolate mRouAeg1 scaffold_m13_p_6, whole genome shotgun sequence	Rousettus aegyptiacus (Egyptian rousette)
83		KB031150.1	92.30	full	19,893,110	19,893,040	KB031150.1 Pteropus alecto unplaced genomic scaffold scaffold98, whole genome shotgun sequence	Pteropus alecto (black flying fox)
84		NW_011888831.1	92.30	full	6,887,001	6,887,071	NW_011888831.1 Pteropus vampyrus isolate Shadow unplaced genomic scaffold, Pvam_2.0 Scaffold50, whole genome shotgun sequence	Pteropus vampyrus (large flying fox)
85		CM001004.3	92.10	full	77,963,997	77,964,067	CM001004.3 Mus musculus chromosome 11, GRCm39 reference primary assembly C57BL/6J	Mus musculus (house mouse)
86		NW_006804046.1	92.10	full	4,601,127	4,601,197	NW_006804046.1 Erinaceus europaeus isolate Erinaceus europaeus_13Jul2011 unplaced genomic scaffold, EriEur2.0 scaffold00123, whole genome shotgun sequence	Erinaceus europaeus (western European hedgehog)
87		GL873631.1	92.00	full	1,373,089	1,373,159	Otolemur garnettii unplaced genomic scaffold scaffold00112, whole genome shotgun sequence.	Otolemur garnettii (small-eared galago)
88		CM026983.1	91.90	full	62,961,521	62,961,591	CM026983.1 Rattus norvegicus strain BN/NHsdMcwi chromosome 10, whole genome shotgun sequence	Rattus norvegicus (Norway rat)
89		JAATJU010022200.1	91.70	full	6,607,274	6,607,204	JAATJU010022200.1 Microtus ochrogaster isolate LTLLF scaffold3, whole genome shotgun sequence	Microtus ochrogaster (prairie vole)
90		LZPO01085843.1	91.70	full	738,899	738,829	Neotoma lepida isolate 417 scaffold_72, whole genome shotgun sequence.	Neotoma lepida (desert woodrat)
91		NW_004820275.1	91.70	full	324	254	NW_004820275.1 Mesocricetus auratus isolate Golden Hamster female 1 unplaced genomic scaffold, MesAur1.0 scaffold18672, whole genome shotgun sequence	Mesocricetus auratus (golden hamster)
92		NW_006501124.1	91.70	full	4,186,498	4,186,568	NW_006501124.1 Peromyscus maniculatus bairdii unplaced genomic scaffold, Pman_1.0 Scaffold88, whole genome shotgun sequence	Peromyscus maniculatus bairdii (prairie deer mouse)
93		CM008012.1	91.70	full	121,243,298	121,243,228	CM008012.1 Cervus elaphus hippelaphus isolate Hungarian chromosome 5, whole genome shotgun sequence	Cervus elaphus hippelaphus
94		CM016628.2	91.70	full	95,837,056	95,836,986	CM016628.2 Camelus dromedarius isolate Drom800 breed African chromosome 2, whole genome shotgun sequence	Camelus dromedarius (Arabian camel)
95		CM016642.2	91.70	full	33,689,164	33,689,094	CM016642.2 Camelus dromedarius isolate Drom800 breed African chromosome 16, whole genome shotgun sequence	Camelus dromedarius (Arabian camel)
96		CM018495.1	91.70	full	19,364,068	19,363,998	CM018495.1 Muntiacus reevesi isolate UCam_UCB_Mr chromosome 17, whole genome shotgun sequence	Muntiacus reevesi (Chinese muntjac)
97		CM021196.1	91.70	full	88,064,621	88,064,551	CM021196.1 Cervus hanglu yarkandensis isolate CEY-2017 chromosome 5, whole genome shotgun sequence	Cervus elaphus yarkandensis
98		KB017029.1	91.70	full	3,138,523	3,138,453	Camelus ferus unplaced genomic scaffold scaffold765, whole genome shotgun sequence.	Camelus ferus (Wild Bactrian camel)
99		KL199813.1	91.70	full	116,291	116,221	KL199813.1 Nannospalax galili isolate Female #2095 unplaced genomic scaffold scaffold212, whole genome shotgun sequence	Nannospalax galili (Upper Galilee mountains blind mole rat)
100		NW_011514557.1	91.70	full	4,029,642	4,029,712	NW_011514557.1 Camelus bactrianus breed Alxa unplaced genomic scaffold, Ca_bactrianus_MBC_1.0 scaffold220, whole genome shotgun sequence	Camelus bactrianus (Bactrian camel)
101		NW_018343220.1	91.70	full	650,682	650,612	NW_018343220.1 Odocoileus virginianus texanus isolate animal Pink-7 unplaced genomic scaffold, Ovir.te_1.0 scaffold934, whole genome shotgun sequence	Odocoileus virginianus texanus
102		NW_021964190.1	91.70	full	4,432,587	4,432,517	NW_021964190.1 Vicugna pacos isolate Carlotta (AHFN-0088) chromosome 16 unlocalized genomic scaffold, VicPac3.1 ScfyRBE_77368;HRSCAF=79261, whole genome shotgun sequence	Vicugna pacos (alpaca)
103		CM009158.1	91.50	full	43,071,932	43,071,862	CM009158.1 Equus caballus isolate Twilight breed thoroughbred chromosome 11, whole genome shotgun sequence	Equus caballus (horse)
104		CM027702.2	91.50	full	22,083,515	22,083,585	CM027702.2 Equus asinus breed Dezhou chromosome 13, whole genome shotgun sequence	Equus asinus (ass)
105		JH001459.1	91.50	full	338,430	338,500	JH001459.1 Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold11161, whole genome shotgun sequence	Cricetulus griseus (Chinese hamster)
106		NW_024424897.1	91.20	full	41,446,625	41,446,555	NW_024424897.1 Ursus maritimus isolate PB19 unplaced genomic scaffold, ASM1731132v1 scaffold_24, whole genome shotgun sequence	Ursus maritimus (polar bear)
107		CM001957.1	91.00	full	22,621,800	22,621,730	Chlorocebus sabaeus isolate 1994-021 chromosome 16, whole genome shotgun sequence.	Chlorocebus sabaeus
108		NW_007253187.1	90.90	full	67,087	67,157	NW_007253187.1 Carlito syrichta isolate Samal-C Ts95f unplaced genomic scaffold, Tarsius_syrichta-2.0.1 Scaffold309091, whole genome shotgun sequence	Carlito syrichta (Philippine tarsier)
109		JACAGB010000039.1	90.50	full	3,705,552	3,705,622	JACAGB010000039.1 Pipistrellus kuhlii isolate mPipKuh1 scaffold_m20_p_39, whole genome shotgun sequence	Pipistrellus kuhlii (Kuhl's pipistrelle)
110		JACDTQ010002743.1	90.40	full	20,315,290	20,315,220	JACDTQ010002743.1 Diceros bicornis minor isolate SBR-YM ScS9zPn_2743, whole genome shotgun sequence	Diceros bicornis minor
111		CABDUW010000038.1	90.20	full	1,183,587	1,183,517	CABDUW010000038.1 Marmota monax genome assembly, contig: monax5_s00038, whole genome shotgun sequence	Marmota monax (woodchuck)
112		CZRN02000050.1	90.20	full	4,268,175	4,268,245	CZRN02000050.1 Marmota marmota marmota genome assembly, contig: chr11_part3, whole genome shotgun sequence	Marmota marmota marmota (Alpine marmot)
113		JH393348.1	90.20	full	5,053,813	5,053,743	JH393348.1 Spermophilus tridecemlineatus unplaced genomic scaffold scaffold00070, whole genome shotgun sequence	Spermophilus tridecemlineatus (thirteen-lined ground squirrel)
114		KZ294014.1	90.20	full	4,111,935	4,112,005	KZ294014.1 Spermophilus dauricus unplaced genomic scaffold scaffold825, whole genome shotgun sequence	Spermophilus dauricus (Daurian ground squirrel)
115		QVIC01000064.1	90.20	full	3,809,869	3,809,939	QVIC01000064.1 Urocitellus parryii isolate AGS 11-09-20 scaffold_63, whole genome shotgun sequence	Spermophilus parryii (Arctic ground squirrel)
116		JACASF010000019.1	89.70	full	39,401,032	39,400,962	JACASF010000019.1 Molossus molossus isolate mMolMol1 scaffold_m16_p_19, whole genome shotgun sequence	Molossus molossus (Pallas's mastiff bat)
117		CM016987.1	89.40	full	16,723,545	16,723,615	CM016987.1 Suricata suricatta isolate VVHF042 chromosome 17, whole genome shotgun sequence	Suricata suricatta (meerkat)
118		QGOO02000006.1	88.50	full	75,009,137	75,009,207	QGOO02000006.1 Mus spicilegus strain ZRU musp714_scaffold_00006b, whole genome shotgun sequence	Mus spicilegus (steppe mouse)
119		JAATJV010393499.1	88.40	full	725,434	725,504	JAATJV010393499.1 Sciurus carolinensis isolate SUZIE scaffold4845, whole genome shotgun sequence	Sciurus carolinensis (gray squirrel)
120		GL010074.1	87.70	full	1,838,910	1,838,840	Loxodonta africana unplaced genomic scaffold scaffold_47, whole genome shotgun sequence.	Loxodonta africana (African savanna elephant)
121		NW_004444074.1	87.50	full	1,165,134	1,165,204	NW_004444074.1 Trichechus manatus latirostris isolate Lorelei unplaced genomic scaffold, TriManLat1.0 scaffold00138, whole genome shotgun sequence	Trichechus manatus latirostris
122		CM014216.1	87.40	full	9,165,209	9,165,279	CM014216.1 Ornithorhynchus anatinus isolate Pmale09 chromosome 17, whole genome shotgun sequence	Ornithorhynchus anatinus (platypus)
123		JH721941.1	87.30	full	4,314,801	4,314,871	JH721941.1 Chinchilla lanigera unplaced genomic scaffold scaffold00080, whole genome shotgun sequence	Chinchilla lanigera
124		NW_004524648.1	87.30	full	5,000,973	5,001,043	NW_004524648.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00072, whole genome shotgun sequence	Octodon degus (degu)
125		NW_017871705.1	87.10	full	50,569	50,639	NW_017871705.1 Castor canadensis isolate Ward unplaced genomic scaffold, C.can genome v1.0 scaffold_2378, whole genome shotgun sequence	Castor canadensis (American beaver)
126		NC_040910.2	86.80	full	79,100,306	79,100,376	NC_040910.2 Phyllostomus discolor isolate MPI-MPIP mPhyDis1 chromosome 8, mPhyDis1.pri.v3, whole genome shotgun sequence	Phyllostomus discolor (pale spear-nosed bat)
127		NW_012267247.1	85.40	full	4,415,744	4,415,674	NW_012267247.1 Dipodomys ordii isolate 6190 unplaced genomic scaffold, Dord_2.0 Scaffold31, whole genome shotgun sequence	Dipodomys ordii (Ord's kangaroo rat)
128		DS562887.1	85.20	full	23,622,498	23,622,568	Cavia porcellus supercont2_32 genomic scaffold, whole genome shotgun sequence.	Cavia porcellus (Domestic guinea pig)
129		QVOM02000007.1	84.10	full	5,070,931	5,071,001	QVOM02000007.1 Salvator merianae strain LG2117 Scaffold_7, whole genome shotgun sequence	Tupinambis merianae
130		LR735557.1	83.90	full	435,514,584	435,514,514	LR735557.1 Sarcophilus harrisii genome assembly, chromosome: 4	Sarcophilus harrisii (Tasmanian devil)
131		JH725508.1	83.80	full	12,333,872	12,333,803	JH725508.1 Jaculus jaculus unplaced genomic scaffold scaffold00072, whole genome shotgun sequence	Jaculus jaculus (lesser Egyptian jerboa)
132		JH172092.1	83.30	full	1,887,037	1,886,967	JH172092.1 Heterocephalus glaber unplaced genomic scaffold scaffold207, whole genome shotgun sequence	Heterocephalus glaber (naked mole-rat)
133		KN123351.1	83.30	full	4,226,376	4,226,446	KN123351.1 Fukomys damarensis unplaced genomic scaffold scaffold439, whole genome shotgun sequence	Fukomys damarensis (Damara mole-rat)
134		JAPFRF010000017.1	82.50	full	627,715	627,645	JAPFRF010000017.1 Phrynocephalus forsythii HIC_ASM_16, whole genome shotgun sequence	Phrynocephalus forsythii
135		NC_030678.2	82.50	full	34,088,998	34,089,068	NC_030678.2 Xenopus tropicalis strain Nigerian chromosome 2, UCB_Xtro_10.0, whole genome shotgun sequence	Xenopus (Silurana) tropicalis (western clawed frog)
136		VZTR01007159.1	81.90	full	19,817	19,887	VZTR01007159.1 Chaetops frenatus voucher UWBM:52975 isolate B10K-DU-012-41 scaffold2835, whole genome shotgun sequence	Chaetops frenatus (Rufous rock-jumper)
137		NC_054373.1	81.70	full	33,925,950	33,926,020	NC_054373.1 Xenopus laevis strain J_2021 chromosome 2L, Xenopus_laevis_v10.1, whole genome shotgun sequence	Xenopus laevis (African clawed frog)
138		NC_044043.1	81.60	full	58,949,831	58,949,901	NC_044043.1 Microcaecilia unicolor chromosome 13, aMicUni1.1, whole genome shotgun sequence	Microcaecilia unicolor
139		VYZS01112324.1	81.40	full	748	678	VYZS01112324.1 Neodrepanis coruscans voucher FMNH:AVES:345711 isolate B10K-DU-002-79 scaffold95268, whole genome shotgun sequence	Neodrepanis coruscans (wattled asity)
140		VWPQ01029547.1	81.30	full	220	290	VWPQ01029547.1 Ceuthmochares aereus voucher LSUMZ:Ornithology:B45261 isolate B10K-CU-031-02 scaffold_29590, whole genome shotgun sequence	Ceuthmochares aereus
141		NW_018151044.1	81.10	full	767,432	767,362	NW_018151044.1 Pogona vitticeps unplaced genomic scaffold, pvi1.1.0 contig16401, whole genome shotgun sequence	Pogona vitticeps (central bearded dragon)
142		NC_047098.1	80.80	full	32,500,706	32,500,636	NC_047098.1 Geotrypetes seraphini chromosome 15, aGeoSer1.1, whole genome shotgun sequence	Geotrypetes seraphini
143		BJBX01000544.1	80.80	full	57,953	57,883	BJBX01000544.1 Accipiter nisus DNA, Acni_544, cell line: 158A, whole genome shotgun sequence	Accipiter nisus (Eurasian sparrowhawk)
144		ML991258.1	80.80	full	122,717	122,787	ML991258.1 Buteo japonicus isolate eb-nibr-220 unplaced genomic scaffold scaffold161, whole genome shotgun sequence	Buteo japonicus
145		LR606190.1	80.70	full	38,089,841	38,089,771	LR606190.1 Aquila chrysaetos chrysaetos genome assembly, chromosome: 10	Aquila chrysaetos chrysaetos
146		NC_007116.7	80.70	full	42,272,035	42,271,965	NC_007116.7 Danio rerio strain Tuebingen chromosome 5, GRCz11 Primary Assembly	Danio rerio (zebrafish)
147		VXAF01000782.1	80.70	full	441,410	441,340	VXAF01000782.1 Spizaetus tyrannus voucher USNM:623090 isolate B10K-DU-007-42 scaffold_648, whole genome shotgun sequence	Spizaetus tyrannus (black hawk-eagle)
148		VWYW01000641.1	80.60	full	251,919	251,989	VWYW01000641.1 Smithornis capensis voucher C:138652 isolate B10K-CU-031-20 scaffold_632, whole genome shotgun sequence	Smithornis capensis
149		VZTO01019866.1	80.60	full	52,670	52,740	VZTO01019866.1 Syrrhaptes paradoxus voucher USNM:586725 isolate B10K-DU-003-42 scaffold2785, whole genome shotgun sequence	Syrrhaptes paradoxus (Pallas's sandgrouse)
150		LR738613.1	80.50	full	66,397,041	66,397,112	LR738613.1 Sciurus vulgaris genome assembly, chromosome: 3	Sciurus vulgaris (Eurasian red squirrel)
151		CM008556.1	80.30	full	6,721,538	6,721,608	CM008556.1 Anas platyrhynchos platyrhynchos breed Pekin duck chromosome 20, whole genome shotgun sequence	Anas platyrhynchos platyrhynchos (common mallard)
152		CM018637.1	80.30	full	6,106,837	6,106,767	CM018637.1 Cairina moschata domestica isolate CanardBarbarie3_02_2015_G chromosome 20, whole genome shotgun sequence	Cairina moschata domestica (muscovy duck (domestic type))
153		LMAW01002484.1	80.30	full	454,971	455,041	Amazona aestiva scaffold_324, whole genome shotgun sequence.	Amazona aestiva (blue-fronted amazon)
154		NC_045578.1	80.30	full	6,918,144	6,918,074	NC_045578.1 Aythya fuligula isolate bAytFul2 chromosome 20, bAytFul2.pri, whole genome shotgun sequence	Aythya fuligula (tufted duck)
155		NOIK01000729.1	80.30	full	84,707	84,777	NOIK01000729.1 Anas zonorhyncha breed spot-billed scaffold731, whole genome shotgun sequence	Anas zonorhyncha
156		NOIK01002031.1	80.30	full	7,884	7,954	NOIK01002031.1 Anas zonorhyncha breed spot-billed scaffold2043, whole genome shotgun sequence	Anas zonorhyncha
157		AZIM01003573.1	80.30	full	16,670	16,600	Ophiophagus hannah scaffold3575.1, whole genome shotgun sequence.	Ophiophagus hannah (king cobra)
158		JH556322.1	80.20	full	103,060	103,129	JH556322.1 Melopsittacus undulatus unplaced genomic scaffold budgerigar_v6.3_scf900160276775, whole genome shotgun sequence	Melopsittacus undulatus (budgerigar)
159		VZRD01000138.1	80.20	full	242,332	242,262	VZRD01000138.1 Tachuris rubrigastra voucher LSUMZ:Ornithology:B48222 isolate B10K-CU-031-13 scaffold_134, whole genome shotgun sequence	Tachuris rubrigastra
160		VZRH01002260.1	80.20	full	87,638	87,568	VZRH01002260.1 Urocynchramus pylzowi voucher IZCAS:653 isolate B10K-DU-012-38 scaffold906, whole genome shotgun sequence	Urocynchramus pylzowi
161		VXBV01001923.1	80.10	full	72,912	72,842	VXBV01001923.1 Certhia brachydactyla voucher USNM:637436 isolate B10K-DU-002-20 scaffold1535, whole genome shotgun sequence	Certhia brachydactyla
162		KL447643.1	80.00	full	2,823,178	2,823,108	Cuculus canorus isolate BGI_N303 unplaced genomic scaffold scaffold544, whole genome shotgun sequence.	Cuculus canorus (common cuckoo)
163		NW_013658278.1	79.90	full	101,508	101,578	NW_013658278.1 Thamnophis sirtalis isolate EDBJR-23777 unplaced genomic scaffold, Thamnophis_sirtalis-6.0 Scaffold598, whole genome shotgun sequence	Thamnophis sirtalis
164		KL410563.1	79.90	full	190,676	190,746	KL410563.1 Nipponia nippon isolate BGI_Y956 unplaced genomic scaffold Scaffold75, whole genome shotgun sequence	Nipponia nippon (crested ibis)
165		VWZA01002068.1	79.80	full	65,509	65,579	VWZA01002068.1 Oceanites oceanicus voucher LSUMZ:Ornithology:B46846 isolate B10K-CU-031-11 scaffold_2050, whole genome shotgun sequence	Oceanites oceanicus
166		QZWQ01000058.1	79.70	full	967,193	967,123	QZWQ01000058.1 Pavo cristatus isolate SKPea2016_SI scaffold9_len1383211_cov0, whole genome shotgun sequence	Pavo cristatus (Indian peafowl)
167		VXBZ01001484.1	79.70	full	22,500	22,570	VXBZ01001484.1 Heliornis fulica voucher USNM:623068 isolate B10K-DU-001-55 scaffold2786, whole genome shotgun sequence	Heliornis fulica (sungrebe)
168		VYZC01000810.1	79.70	full	96,678	96,748	VYZC01000810.1 Mionectes macconnelli voucher USNM:639118 isolate B10K-DU-003-16 scaffold_803, whole genome shotgun sequence	Mionectes macconnelli (McConnell's flycatcher)
169		WBMZ01010193.1	79.70	full	1,074	1,005	WBMZ01010193.1 Atrichornis clamosus isolate B10K-DU-029-61 scaffold16824, whole genome shotgun sequence	Atrichornis clamosus
170		WEKY01034336.1	79.70	full	1,010,926	1,010,995	WEKY01034336.1 Picathartes gymnocephalus voucher LSUMZ:Ornithology:B30793 isolate B10K-DU-012-30 scaffold493, whole genome shotgun sequence	Picathartes gymnocephalus
171		VZRR01009493.1	79.70	full	6,995	6,925	VZRR01009493.1 Oreocharis arfaki isolate B10K-DU-029-42 scaffold8133, whole genome shotgun sequence	Oreocharis arfaki
172		NC_054374.1	79.60	full	4,333,939	4,333,869	NC_054374.1 Xenopus laevis strain J_2021 chromosome 2S, Xenopus_laevis_v10.1, whole genome shotgun sequence	Xenopus laevis (African clawed frog)
173		VZSO01000208.1	79.60	full	239,121	239,191	VZSO01000208.1 Asarcornis scutulata voucher ECUH:510 isolate OUT-0051 scaffold1113, whole genome shotgun sequence	Asarcornis scutulata
174		MDVP01000051.1	79.60	full	17,113,399	17,113,469	MDVP01000051.1 Crocodylus porosus isolate Cpor-Errol scaffold_51, whole genome shotgun sequence	Crocodylus porosus (Australian saltwater crocodile)
175		CM019148.1	79.40	full	1,585,725	1,585,655	CM019148.1 Naja naja isolate NN01 chromosome 1, whole genome shotgun sequence	Naja naja
176		ML996868.1	79.40	full	1,173,509	1,173,439	ML996868.1 Falco tinnunculus isolate ck-nibr-243 unplaced genomic scaffold scaffold1042, whole genome shotgun sequence	Falco tinnunculus (common kestrel)
177		PYXA01084198.1	79.40	full	390	320	PYXA01084198.1 Falco tinnunculus isolate ck-nibr-243 scaffold376908_contig1, whole genome shotgun sequence	Falco tinnunculus (common kestrel)
178		VXAJ01000266.1	79.40	full	970,852	970,922	VXAJ01000266.1 Herpetotheres cachinnans voucher USNM:612262 isolate B10K-DU-005-78 scaffold_260, whole genome shotgun sequence	Herpetotheres cachinnans
179		VXBA01001494.1	79.40	full	843,407	843,477	VXBA01001494.1 Serilophus lunatus voucher USNM:631797 isolate B10K-DU-002-03 scaffold1136, whole genome shotgun sequence	Serilophus lunatus (silver-breasted broadbill)
180		WEIS01075475.1	79.40	full	18,117	18,047	WEIS01075475.1 Todus mexicanus voucher LSUMZ:Ornithology:B16815 isolate B10K-DU-002-69 scaffold11480, whole genome shotgun sequence	Todus mexicanus (puerto rican tody)
181		WEIV01010171.1	79.40	full	121,313	121,243	WEIV01010171.1 Calyptomena viridis voucher LSUMZ:Ornithology:B36377 isolate B10K-DU-002-55 scaffold4675, whole genome shotgun sequence	Calyptomena viridis (green broadbill)
182		VWZP01016761.1	79.40	full	1,003,927	1,003,997	VWZP01016761.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 scaffold1402, whole genome shotgun sequence	Dicaeum eximium
183		VYZT01040062.1	79.40	full	251,111	251,181	VYZT01040062.1 Pomatostomus ruficeps voucher LSUMZ:Ornithology:B23408 isolate B10K-DU-002-71 scaffold3177, whole genome shotgun sequence	Pomatostomus ruficeps (chestnut-crowned babbler)
184		VXBU01005391.1	79.20	full	1,368,080	1,368,150	VXBU01005391.1 Bombycilla garrulus voucher USNM:638986 isolate B10K-DU-002-23 scaffold1824, whole genome shotgun sequence	Bombycilla garrulus
185		VZTX01028901.1	79.20	full	1,107	1,037	VZTX01028901.1 Pardalotus punctatus voucher MVMA:289 isolate B10K-DU-029-51 scaffold20353, whole genome shotgun sequence	Pardalotus punctatus (spotted pardalote)
186		VZZY01022449.1	79.20	full	155,638	155,708	VZZY01022449.1 Eurystomus gularis voucher LSUMZ:Ornithology:B39360 isolate B10K-DU-002-51 scaffold1470, whole genome shotgun sequence	Eurystomus gularis
187		VZTU01014171.1	79.10	full	61,931	62,001	VZTU01014171.1 Zapornia atra voucher USNM:542120 isolate B10K-DU-011-47 scaffold4579, whole genome shotgun sequence	Zapornia atra
188		VZUJ01106108.1	79.10	full	7,762	7,692	VZUJ01106108.1 Atlantisia rogersi isolate OUT-0055 NODE_17852_length_17176_cov_10.3826_ID_35703, whole genome shotgun sequence	Atlantisia rogersi (inaccessible island rail)
189		VZZT01000022.1	79.10	full	856,369	856,439	VZZT01000022.1 Fregetta grallaria voucher USNM:615151 isolate B10K-DU-006-09 scaffold_21, whole genome shotgun sequence	Fregetta grallaria
190		CM000982.2	79.10	full	9,607,279	9,607,209	Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome 21, whole genome shotgun sequence.	Meleagris gallopavo (turkey)
191		KZ860272.1	79.10	full	390,085	390,155	KZ860272.1 Chrysolophus pictus breed wild golden pheasant unplaced genomic scaffold scaffold362, whole genome shotgun sequence	Chrysolophus pictus (golden pheasant)
192		MCFN01000384.1	79.10	full	790,087	790,156	Callipepla squamata strain Texas jcf7180005232817, whole genome shotgun sequence.	Callipepla squamata (scaled quail)
193		VWYY01001297.1	79.10	full	22,141	22,211	VWYY01001297.1 Ptilorrhoa leucosticta voucher C:138661 isolate B10K-CU-031-17 scaffold_1289, whole genome shotgun sequence	Ptilorrhoa leucosticta
194		VZRK01000085.1	79.10	full	3,724,351	3,724,421	VZRK01000085.1 Onychorhynchus coronatus voucher USNM:614072 isolate B10K-DU-028-75 scaffold_72, whole genome shotgun sequence	Onychorhynchus coronatus
195		WBNC01001801.1	79.10	full	13,266	13,336	WBNC01001801.1 Certhia familiaris voucher SNSD:Ornithologie:MTD-C65320 isolate OUT-0039 scaffold_3129, whole genome shotgun sequence	Certhia familiaris
196		VCAZ01000029.1	79.00	full	75,238	75,308	VCAZ01000029.1 Bagarius yarrelli isolate JWS20170419001 scaffold26_size3952864_pilon, whole genome shotgun sequence	Bagarius yarrelli (goonch)
197		VYZA01000154.1	79.00	full	215,058	215,128	VYZA01000154.1 Neopipo cinnamomea voucher USNM:586435 isolate B10K-DU-004-15 scaffold_139_2, whole genome shotgun sequence	Neopipo cinnamomea
198		WAAD01006232.1	79.00	full	27,170	27,240	WAAD01006232.1 Fregata magnificens voucher LSUMZ:Ornithology:B24538 isolate B10K-DU-002-48 scaffold12501, whole genome shotgun sequence	Fregata magnificens
199		WEKX01024179.1	79.00	full	116,438	116,368	WEKX01024179.1 Pitta sordida voucher LSUMZ:Ornithology:B51072 isolate B10K-DU-002-53 scaffold1802, whole genome shotgun sequence	Pitta sordida (hooded pitta)
200		VXBP01004622.1	78.90	full	1,102,862	1,102,792	VXBP01004622.1 Rhinopomastus cyanomelas voucher USNM:642342 isolate B10K-DU-002-35 scaffold527, whole genome shotgun sequence	Rhinopomastus cyanomelas (common scimitar-bill)
201		CM028500.1	78.80	full	6,347,798	6,347,728	CM028500.1 Gallus gallus isolate bGalGal1 chromosome 19, whole genome shotgun sequence	Gallus gallus (chicken)
202		PPHD01149705.1	78.80	full	175	105	PPHD01149705.1 Bambusicola thoracicus isolate RTK389 B.A.C_149705, whole genome shotgun sequence	Bambusicola thoracica (Chinese bamboo-partridge)
203		CM019064.1	78.70	full	85,763,478	85,763,408	CM019064.1 Leptobrachium leishanense isolate GZLS1 chromosome 2, whole genome shotgun sequence	Leptobrachium leishanense (Leishan spiny toad)
204		CM033470.1	78.70	full	98,647,200	98,647,130	CM033470.1 Hymenochirus boettgeri isolate Female2 chromosome 2, whole genome shotgun sequence	Hymenochirus boettgeri
205		CM033470.1	78.70	full	98,669,685	98,669,755	CM033470.1 Hymenochirus boettgeri isolate Female2 chromosome 2, whole genome shotgun sequence	Hymenochirus boettgeri
206		VXAT01013619.1	78.70	full	27,621	27,691	VXAT01013619.1 Mesembrinibis cayennensis voucher USNM:613351 isolate B10K-DU-001-44 scaffold3308, whole genome shotgun sequence	Mesembrinibis cayennensis
207		VZRY01003297.1	78.70	full	24,966	25,036	VZRY01003297.1 Rhynochetos jubatus isolate B10K-DU-029-58 scaffold5282, whole genome shotgun sequence	Rhynochetos jubatus (kagu)
208		VZTQ01012649.1	78.70	full	29,997	30,067	VZTQ01012649.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold10297, whole genome shotgun sequence	Pelecanoides urinatrix
209		VZUG01009055.1	78.70	full	65,475	65,545	VZUG01009055.1 Calonectris borealis voucher personal:Jacob:6119913 isolate OUT-0025 scaffold1400, whole genome shotgun sequence	Calonectris borealis (cory's shearwater)
210		VXAB01005829.1	78.60	full	13,577	13,647	VXAB01005829.1 Odontophorus gujanensis voucher USNM:621708 isolate B10K-DU-001-53 scaffold5360, whole genome shotgun sequence	Odontophorus gujanensis (marbled wood quail)
211		WBNQ01167569.1	78.60	full	112	181	WBNQ01167569.1 Spizella passerina voucher USNM:633838 isolate B10K-DU-023-52 C41111196, whole genome shotgun sequence	Spizella passerina (chipping sparrow)
212		CM022775.1	78.50	full	6,432,631	6,432,561	CM022775.1 Ameiurus melas isolate M_S1 chromosome 24, whole genome shotgun sequence	Ameiurus melas
213		VWYF01012119.1	78.50	full	6,780	6,710	VWYF01012119.1 Quiscalus mexicanus voucher USNM:608021 isolate B10K-DU-001-31 scaffold17035, whole genome shotgun sequence	Quiscalus mexicanus
214		VZUF01141422.1	78.50	full	805,763	805,833	VZUF01141422.1 Molothrus ater voucher MSB:Bird:39518 isolate OUT-0049 scf7180003602332, whole genome shotgun sequence	Molothrus ater
215		CM001665.1	78.40	full	39,685,237	39,685,167	Nomascus leucogenys chromosome 19, whole genome shotgun sequence.	Nomascus leucogenys (Northern white-cheeked gibbon)
216		CM012101.2	78.40	full	4,179,978	4,180,047	CM012101.2 Taeniopygia guttata isolate Black17 chromosome 19, whole genome shotgun sequence	Taeniopygia guttata
217		CM020357.1	78.40	full	4,343,253	4,343,323	CM020357.1 Catharus ustulatus isolate bCatUst1 chromosome 22, whole genome shotgun sequence	Catharus ustulatus
218		JAHCLZ010002047.1	78.40	full	402	332	JAHCLZ010002047.1 Pygoscelis papua isolate Gentoo_SouthGeorgia 93321, whole genome shotgun sequence	Pygoscelis papua
219		MUZQ01000070.1	78.40	full	3,586,979	3,586,910	Lonchura striata domestica isolate white83orange57 scaffold_69, whole genome shotgun sequence.	Lonchura striata domestica (Bengalese finch)
220		QUSF01000101.1	78.40	full	583,605	583,536	QUSF01000101.1 Chloebia gouldiae isolate Red01 scaffold_101, whole genome shotgun sequence	Erythrura gouldiae (Gouldian finch)
221		VULC01011116.1	78.40	full	43	113	VULC01011116.1 Eudyptula minor isolate Gonzo 89792, whole genome shotgun sequence	Eudyptula minor (little blue penguin)
222		VULC01011116.1	78.40	full	785	855	VULC01011116.1 Eudyptula minor isolate Gonzo 89792, whole genome shotgun sequence	Eudyptula minor (little blue penguin)
223		VWPP01001037.1	78.40	full	81,177	81,107	VWPP01001037.1 Cochlearius cochlearius voucher LSUMZ:Ornithology:B18469 isolate B10K-CU-031-03 scaffold_1030, whole genome shotgun sequence	Cochlearius cochlearius
224		VWZK01010314.1	78.40	full	210,946	210,876	VWZK01010314.1 Baryphthengus martii voucher USNM:606819 isolate B10K-DU-001-21 scaffold763, whole genome shotgun sequence	Baryphthengus martii
225		VYXE01014083.1	78.40	full	116,371	116,302	VYXE01014083.1 Cardinalis cardinalis voucher USNM:626494 isolate B10K-DU-001-69 scaffold1254, whole genome shotgun sequence	Cardinalis cardinalis
226		VYZX01008994.1	78.40	full	277,061	277,131	VYZX01008994.1 Brachypteracias leptosomus voucher FMNH:AVES:345686 isolate B10K-DU-012-52 scaffold3613, whole genome shotgun sequence	Brachypteracias leptosomus (short-legged ground-roller)
227		VZSI01000119.1	78.40	full	315,352	315,422	VZSI01000119.1 Aphelocoma coerulescens voucher CUMV:Bird:1713-13619 isolate OUT-0022 scaffold_109, whole genome shotgun sequence	Aphelocoma coerulescens (scrub jay)
228		VZTW01018876.1	78.40	full	398	468	VZTW01018876.1 Thalassarche chlororhynchos voucher USNM:635731 isolate B10K-DU-029-24 scaffold2099, whole genome shotgun sequence	Thalassarche chlororhynchos
229		WBNB01001237.1	78.40	full	143,778	143,847	WBNB01001237.1 Vidua chalybeata voucher MSB:Bird:30254 isolate OUT-0048 scaffold350, whole genome shotgun sequence	Vidua chalybeata
230		WBNO01028453.1	78.40	full	409,363	409,294	ENA|WBNO01028453|WBNO01028453.1 Peucedramus taeniatus isolate B10K-DU-002-52 scaffold2126, whole genome shotgun sequence.	Peucedramus taeniatus (olive warbler)
231		CM018567.1	78.30	full	6,534,706	6,534,636	CM018567.1 Pangasianodon hypophthalmus strain Indonesia chromosome 27, whole genome shotgun sequence	Pangasianodon hypophthalmus
232		KL672574.1	78.20	full	3,631,278	3,631,208	KL672574.1 Manacus vitellinus isolate BGI_N305 unplaced genomic scaffold scaffold98, whole genome shotgun sequence	Manacus vitellinus (golden-collared manakin)
233		NW_016690383.1	78.20	full	265,507	265,577	NW_016690383.1 Lepidothrix coronata isolate B3197 unplaced genomic scaffold, Lepidothrix_coronata-1.0 Scaffold203, whole genome shotgun sequence	Lepidothrix coronata
234		NW_024104887.1	78.20	full	5,428,362	5,428,292	NW_024104887.1 Pipra filicauda isolate LSUMZ 115617 unplaced genomic scaffold, ASM394559v2 scaffold71_size5581439_pilon, whole genome shotgun sequence	Pipra filicauda
235		QNUK01000078.1	78.20	full	1,626,158	1,626,228	QNUK01000078.1 Clarias magur isolate CIFAMagur01 Scaffold78, whole genome shotgun sequence	Clarias magur (asian catfish)
236		VWPU01013889.1	78.20	full	58,897	58,967	VWPU01013889.1 Callaeas wilsoni voucher OTA:GO-YM212792 isolate B10K-OTA-212792 scaffold9025, whole genome shotgun sequence	Callaeas wilsoni (north island kokako)
237		VXAH01000170.1	78.20	full	247,960	247,890	VXAH01000170.1 Piprites chloris voucher USNM:625579 isolate B10K-DU-007-02 scaffold_105, whole genome shotgun sequence	Piprites chloris (white-winged piprites)
238		VXBN01013032.1	78.20	full	413,539	413,469	VXBN01013032.1 Sinosuthora webbiana voucher USNM:633249 isolate B10K-DU-002-08 scaffold3679, whole genome shotgun sequence	Paradoxornis webbianus
239		VYXC01010439.1	78.20	full	1,533,796	1,533,866	VYXC01010439.1 Platysteira castanea voucher USNM:627032 isolate B10K-DU-001-71 scaffold17, whole genome shotgun sequence	Platysteira castanea
240		VYXF01006348.1	78.20	full	3,744	3,674	VYXF01006348.1 Polioptila caerulea voucher USNM:626438 isolate B10K-DU-001-66 scaffold3041, whole genome shotgun sequence	Polioptila caerulea
241		VYZQ01032775.1	78.20	full	1,729	1,659	VYZQ01032775.1 Mystacornis crossleyi voucher FMNH:AVES:345860 isolate B10K-DU-002-82 scaffold74636, whole genome shotgun sequence	Mystacornis crossleyi
242		VZRE01006262.1	78.20	full	79,155	79,085	VZRE01006262.1 Cephalopterus ornatus voucher USNM:541336 isolate B10K-DU-001-01 scaffold5108, whole genome shotgun sequence	Cephalopterus ornatus (amazonian umbrellabird)
243		VZTB01007449.1	78.20	full	46,944	46,874	VZTB01007449.1 Thryothorus ludovicianus voucher USNM:626484 isolate B10K-DU-001-68 scaffold1645, whole genome shotgun sequence	Thryothorus ludovicianus
244		VZTG01009773.1	78.20	full	191,581	191,511	VZTG01009773.1 Melanocharis versteri isolate B10K-DU-029-37 scaffold1169, whole genome shotgun sequence	Melanocharis versteri (fan-tailed berrypecker)
245		WEIW01002656.1	78.20	full	7,350	7,280	WEIW01002656.1 Chloropsis hardwickii isolate B10K-IZ-033-78 scaffold_2525, whole genome shotgun sequence	Chloropsis hardwickii
246		WEZZ01038008.1	78.20	full	50,657	50,587	WEZZ01038008.1 Chloropsis cyanopogon voucher LSUMZ:Ornithology:B47034 isolate B10K-DU-002-57 scaffold3735, whole genome shotgun sequence	Chloropsis cyanopogon
247		CM002007.1	78.10	full	7,346,596	7,346,526	Ficedula albicollis isolate OC2 chromosome 19, whole genome shotgun sequence.	Ficedula albicollis
248		CM003799.1	78.10	full	4,648,139	4,648,070	CM003799.1 Coturnix japonica isolate 7356 chromosome 19, whole genome shotgun sequence	Coturnix japonica (Japanese quail)
249		SRMA01025441.1	78.10	full	1,103,749	1,103,679	SRMA01025441.1 Danionella cerebrum strain Bolton jcf7180002375224, whole genome shotgun sequence	Danionella translucida
250		VXBF01014518.1	78.10	full	112,185	112,115	VXBF01014518.1 Oenanthe oenanthe voucher USNM:627655 isolate B10K-DU-001-74 scaffold917, whole genome shotgun sequence	Oenanthe oenanthe (Northern wheatear)
251		VYXD01012053.1	78.10	full	249,601	249,671	VYXD01012053.1 Hylia prasina voucher USNM:627009 isolate B10K-DU-001-70 scaffold1606, whole genome shotgun sequence	Hylia prasina (green hylia)
252		VZSK01000244.1	78.10	full	3,456,978	3,456,908	VZSK01000244.1 Erithacus rubecula isolate OUT-0015 sc0000053, whole genome shotgun sequence	Erithacus rubecula (European robin)
253		WBND01001316.1	78.10	full	57,788	57,858	WBND01001316.1 Cercotrichas coryphoeus isolate OUT-0024 scaffold_1237, whole genome shotgun sequence	Cercotrichas coryphoeus (Karoo scrub-robin)
254		WBNE01000082.1	78.10	full	1,138,832	1,138,762	WBNE01000082.1 Copsychus sechellarum isolate OUT-0061 scaffold_28_4, whole genome shotgun sequence	Copsychus sechellarum
255		KZ155884.1	78.00	full	6,488,227	6,488,157	KZ155884.1 Anser cygnoides isolate SCWG-2014 breed Sichuan white goose unplaced genomic scaffold scaffold43, whole genome shotgun sequence	Anser cygnoides (Chinese goose)
256		VXBR01001738.1	78.00	full	68,440	68,370	VXBR01001738.1 Cisticola juncidis voucher USNM:641819 isolate B10K-DU-002-30 scaffold2795, whole genome shotgun sequence	Cisticola juncidis
257		NC_039272.1	78.00	full	10,536,980	10,536,910	NC_039272.1 Carassius auratus strain Wakin chromosome 30, ASM336829v1, whole genome shotgun sequence	Carassius auratus (goldfish)
258		VYXD01012053.1	78.00	full	247,273	247,342	VYXD01012053.1 Hylia prasina voucher USNM:627009 isolate B10K-DU-001-70 scaffold1606, whole genome shotgun sequence	Hylia prasina (green hylia)
259		VZSY01000050.1	78.00	full	1,430,707	1,430,777	VZSY01000050.1 Sapayoa aenigma voucher LSUMZ:Ornithology:B2333 isolate B10K-DU-030-41 scaffold_43, whole genome shotgun sequence	Sapayoa aenigma (broad-billed sapayoa)
260		VZTP01065766.1	77.90	full	94	25	VZTP01065766.1 Prunella fulvescens voucher UWBM:57993 isolate B10K-DU-012-46 C20674559, whole genome shotgun sequence	Prunella fulvescens
261		CM025909.1	77.90	full	6,048,590	6,048,520	CM025909.1 Silurus meridionalis isolate SWU-2019-XX chromosome 25, whole genome shotgun sequence	Silurus meridionalis
262		QCWP01000047.1	77.90	full	4,109,108	4,109,178	QCWP01000047.1 Phasianus colchicus isolate SZU-A5-319 scaffold55_cov57, whole genome shotgun sequence	Phasianus colchicus (Ring-necked pheasant)
263		WBNI01000162.1	77.90	full	938,636	938,705	WBNI01000162.1 Eolophus roseicapilla voucher USNM:632230 isolate B10K-DU-025-06 scaffold_140, whole genome shotgun sequence	Eolophus roseicapillus (Galah)
264		JH127350.1	77.90	full	727,115	727,045	JH127350.1 Latimeria chalumnae unplaced genomic scaffold scaffold00789, whole genome shotgun sequence	Latimeria chalumnae (coelacanth)
265		VWPV01009170.1	77.80	full	4,733	4,663	VWPV01009170.1 Geococcyx californianus voucher LSUMZ:Ornithology:B58226 isolate B10K-CU-031-07 scaffold6329, whole genome shotgun sequence	Geococcyx californianus
266		NIFN02000015.1	77.80	full	3,717,412	3,717,342	NIFN02000015.1 Strix occidentalis caurina voucher CAS:ORN:98821 isolate Sequoia Super-Scaffold_59, whole genome shotgun sequence	Strix occidentalis caurina
267		PYXB01063237.1	77.80	full	92	162	PYXB01063237.1 Otus sunia isolate oso-nibr-517 scaffold50201_contig1, whole genome shotgun sequence	Otus sunia (Oriental scops-owl)
268		VWZU01018840.1	77.80	full	58,467	58,536	VWZU01018840.1 Sterrhoptilus dennistouni voucher USNM:607461 isolate B10K-DU-001-27 scaffold2818, whole genome shotgun sequence	Sterrhoptilus dennistouni
269		VXAP01000971.1	77.80	full	64,415	64,485	VXAP01000971.1 Glaucidium brasilianum voucher USNM:632722 isolate B10K-DU-008-63 scaffold_924, whole genome shotgun sequence	Glaucidium brasilianum (ferruginous pygmy-owl)
270		VYXB01004436.1	77.80	full	22,219	22,289	VYXB01004436.1 Pachyramphus minor voucher USNM:627125 isolate B10K-DU-001-72 scaffold7318, whole genome shotgun sequence	Pachyramphus minor
271		WBNG01001032.1	77.80	full	75,197	75,127	WBNG01001032.1 Elachura formosa voucher IZCAS:20218 isolate B10K-IZCAS-20218 scaffold_997, whole genome shotgun sequence	Elachura formosa (spotted wren-babbler)
272		RQIO01000067.1	77.70	full	2,941,852	2,941,782	RQIO01000067.1 Amazona collaria isolate JAMY3 TDTX972-JAMY3_00067, whole genome shotgun sequence	Amazona collaria (yellow-billed parrot)
273		VULL01002448.1	77.70	full	5,953,799	5,953,869	VULL01002448.1 Eudyptes chrysocome isolate RH 110-1 scaffold_6, whole genome shotgun sequence	Eudyptes chrysocome (Rockhopper penguin)
274		AKHW03003808.1	77.60	full	62,685	62,615	Alligator mississippiensis ScZkoYb_6369, whole genome shotgun sequence.	Alligator mississippiensis (American alligator)
275		JJRQ01062716.1	77.60	full	843	773	Cariama cristata contig62716, whole genome shotgun sequence.	Cariama cristata (red-legged seriema)
276		NW_005842591.1	77.60	full	334,866	334,796	NW_005842591.1 Alligator sinensis unplaced genomic scaffold, ASM45574v1 scaffold1244_1, whole genome shotgun sequence	Alligator sinensis (Chinese alligator)
277		RBHW02000152.1	77.60	full	73,152	73,082	RBHW02000152.1 Electrophorus electricus isolate MRS-EE1 scaffold138, whole genome shotgun sequence	Electrophorus electricus (electric eel)
278		VWZD01009994.1	77.60	full	76,673	76,603	VWZD01009994.1 Sakesphorus luctuosus voucher USNM:562277 isolate B10K-DU-001-06 scaffold5433, whole genome shotgun sequence	Sakesphorus luctuosus
279		VXAC01000666.1	77.60	full	61,495	61,425	VXAC01000666.1 Rhipidura dahli voucher USNM:616255 isolate B10K-DU-001-49 scaffold2983, whole genome shotgun sequence	Rhipidura dahli
280		VZRC01001286.1	77.60	full	63,113	63,183	VZRC01001286.1 Chunga burmeisteri voucher UWBM:77230 isolate B10K-CU-031-22 scaffold_1270, whole genome shotgun sequence	Chunga burmeisteri (black-legged seriema)
281		CM000369.1	77.50	full	506,777,442	506,777,372	Monodelphis domestica chromosome 2, whole genome shotgun sequence.	Monodelphis domestica (gray short-tailed opossum)
282		VWYV01000724.1	77.50	full	61,541	61,611	VWYV01000724.1 Lophotis ruficrista voucher UWBM:95093 isolate B10K-CU-031-23 scaffold_711, whole genome shotgun sequence	Lophotis ruficrista
283		VZTL01070329.1	77.50	full	46,992	46,922	VZTL01070329.1 Scopus umbretta voucher LSUMZ:Ornithology:B29000 isolate B10K-DU-002-70 scaffold16847, whole genome shotgun sequence	Scopus umbretta (hamerkop)
284		CM040323.1	77.40	full	4,375,377	4,375,447	CM040323.1 Lamprotornis superbus isolate SS15 chromosome 19, whole genome shotgun sequence	Lamprotornis superbus
285		VWYM01002139.1	77.40	full	556,183	556,113	VWYM01002139.1 Cinclus mexicanus voucher USNM:630613 isolate B10K-DU-001-77 scaffold2655, whole genome shotgun sequence	Cinclus mexicanus
286		VWZS01002371.1	77.40	full	133,383	133,313	VWZS01002371.1 Rhabdornis inornatus voucher USNM:607544 isolate B10K-DU-001-29 scaffold2104, whole genome shotgun sequence	Rhabdornis inornatus
287		VXBI01006781.1	77.40	full	249,072	249,142	VXBI01006781.1 Toxostoma redivivum voucher USNM:636895 isolate B10K-DU-002-15 scaffold1989, whole genome shotgun sequence	Toxostoma redivivum
288		VZTC01002626.1	77.40	full	2,926	2,996	VZTC01002626.1 Leucopsar rothschildi voucher USNM:631788 isolate B10K-DU-002-02 scaffold10283, whole genome shotgun sequence	Leucopsar rothschildi
289		VZTT01009005.1	77.40	full	1,666	1,596	VZTT01009005.1 Buphagus erythrorhynchus voucher KANU:26688 isolate B10K-DU-012-02 scaffold30802, whole genome shotgun sequence	Buphagus erythrorhynchus (red-billed oxpecker)
290		KB521250.1	77.40	full	8,846,024	8,846,094	KB521250.1 Chelonia mydas unplaced genomic scaffold scaffold203, whole genome shotgun sequence	Chelonia mydas (green seaturtle)
291		LR595716.1	77.40	full	6,960,370	6,960,301	LR595716.1 Camarhynchus parvulus genome assembly, chromosome: 19, whole genome shotgun sequence	Camarhynchus parvulus
292		VWYZ01000176.1	77.40	full	1,019,408	1,019,339	VWYZ01000176.1 Rhodinocichla rosea voucher LSUMZ:Ornithology:B26906 isolate B10K-CU-031-12 scaffold_157, whole genome shotgun sequence	Rhodinocichla rosea
293		VWZM01006643.1	77.40	full	624,366	624,297	VWZM01006643.1 Loxia leucoptera voucher USNM:601821 isolate B10K-DU-001-19 scaffold1104, whole genome shotgun sequence	Loxia leucoptera
294		VWZV01012894.1	77.40	full	47,150	47,081	VWZV01012894.1 Irena cyanogastra voucher USNM:607434 isolate B10K-DU-001-26 scaffold4015, whole genome shotgun sequence	Irena cyanogaster
295		VYZP01214070.1	77.40	full	96	27	VYZP01214070.1 Hypocryptadius cinnamomeus voucher FMNH:AVES:357649 isolate B10K-DU-002-83 C9942123, whole genome shotgun sequence	Hypocryptadius cinnamomeus
296		VZSA02000870.1	77.40	full	2,920,636	2,920,567	VZSA02000870.1 Melospiza melodia voucher UBC:243185379 isolate OUT-0008 Contig869_pilon, whole genome shotgun sequence	Melospiza melodia (song sparrow)
297		VZSM01005294.1	77.40	full	415,101	415,032	VZSM01005294.1 Loxia curvirostra voucher UWYMV:Bird:2860 isolate OUT-0011 scaffold581, whole genome shotgun sequence	Loxia curvirostra
298		VZSU01004303.1	77.40	full	57,418	57,487	VZSU01004303.1 Nesospiza acunhae isolate OUT-0053 scaffold4411, whole genome shotgun sequence	Nesospiza acunhae
299		WBNP01052036.1	77.40	full	442	373	WBNP01052036.1 Passerina amoena isolate OUT-0017 scaffold599546, whole genome shotgun sequence	Passerina amoena
300		CM032621.1	77.30	full	14,258,096	14,258,166	CM032621.1 Hemibagrus wyckioides isolate EC202008001 linkage group LG28, whole genome shotgun sequence	Hemibagrus wyckioides

Note: this table contains only the first 300 sequences.

There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...

View options

You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.

Formatting options

You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".

Download

Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.

Submit a new alignment

We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.

In this page you can view static images showing the secondary structure of this family using a variety of colouring schemes:

Conservation (cons): this plot colours each character by how well conserved it is. A site with 100% sequence conservation is coloured red, 0% is violet.

Covariation (cov): this plot colours each base-pair according to how much the corresponding nucleotides are co-varying. A base-pair position at which every pair of nucleotides is co-variant with respect to every other pair in the alignment gets a score of 2 and is coloured red. Conversely, a base-pair position at every pair is anti-co-variant with respect to every other pair (e.g. lots of mutations to non-canonical pairs) gets a score of -2 and is coloured violet. Further information on this metric can be found in this document.

Sequence entropy (ent): this plot colours each character by how under- or over-represented the residues at the site are. Sites where one or more nucleotides are over-represented while the other nucleotides are either non-existent or near the background frequencies, receive positive scores; sites where all the nucleotides are under-represented receive negative scores. Further information on this metric can be found in this document.

Fraction of canonical basepairs (fcbp): this plot colours each base-pair by the percentage of canonical basepairs (A:U, C:G, G:U) which are found in the corresponding position in the alignment. A pair of sites with 100% canonical pairs is coloured red, a site with 0% is violet.

Maximum parse of the covariance model (maxcm): this plot takes the covariance model for the family and generates the sequence with the maximum possible score for that model. Each character is coloured by how many bits it contributes to the total score.

Sequence: for most of the above cases, the representative sequence used for the backbone is the most informative sequence (MIS). Any residue that has a higher frequency than than the background frequency is projected into the IUPAC redundancy codes.

Normal: this plot simply colours each stem loop

R-chie (rchie): arc diagrams showing secondary structure, calculated using the R-chie package. The consensus secondary structure is visualized as arc diagrams on top of each diagram, where a basepair in an arc, connect two columns of the block of sequences below. The block of sequences below represent the multiple sequence alignment of the Rfam seed, where each sequence is a horizontal strip. Sequences in the alignments are ordered so sequences that best fit the structure are on top, and those that do not fit as well are towards the bottom. For seed alignments for over 500 sequences, 500 random sequences were chosen. Rfam entries without sturcture have a blank plot. Colour information can be found on the R-chie FAQ.

You can also view the secondary structure in the VARNA applet. The applet is shown in a separate pop-up window.

Acknowledgements

The bulk of the code for generating these graphics was kindly supplied by Andreas Gruber and Ivo Hofacker. The statistics were implemented by Rfam.

The VARNA applet is developed by Yann Ponty et al:

The R-chie arc diagrams were calculated using R-chie:

These trees were generated using either a maximum likelihood approach or neighbour-joining. If the number of sequences in the alignment was less than or equal to 64 then the maximum likelihood approach of Rivas and Eddy was used [1]. For families with more than 64 sequences in the alignment the neighbour-joining approach with F84 distances as implemented in phylip was used [2].

Note: You can also download the data file for the seed tree.

We do not have tree information for this family. This is most likely due to the size of the family and the number of species covered. For very large families it is too computationally expensive to calculate trees and the resulting tree images would be too large to display in a browser.

There are 2 motifs which match this family.

This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...

Original order	Motif Accession	Motif Description	Number of Hits	Fraction of Hits	Sum of Bits	Image
7	RM00022	Rho independent terminator 1	8	0.364	102.1
7	RM00023	Rho independent terminator 2	18	0.818	224.5