0  structures 905  species 2337  sequences

Family: mir-124 (RF00239)

Description: mir-124 microRNA precursor family

Summary

Wikipedia annotation Edit Wikipedia article

The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry mir-124 microRNA precursor family. More...

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Sequences

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Table preview (300 out of 2,337 sequence regions)

Original order Download FASTA Accession Bit score Type Start End Description Species View context
0
URS000075A274_10090 N/A seed 1 68 Mus musculus (house mouse) microRNA mmu-mir-124 precursor (mmu-mir-124-3) Mus musculus (house mouse)  
1
URS000075CB11_59729 N/A seed 56 127 Taeniopygia guttata (zebra finch) microRNA tgu-mir-124 precursor (tgu-mir-124-3) Taeniopygia guttata  
2
URS000075EDDE_9606 N/A seed 8 79 Homo sapiens (human) microRNA hsa-mir-124 precursor (hsa-mir-124-3) Homo sapiens (human)  
3
URS0000710B7D_29078 N/A seed 5 76 Eptesicus fuscus (big brown bat) microRNA efu-mir-124 precursor (efu-mir-124-3) Eptesicus fuscus (big brown bat)  
4
URS000075EDDE_10116 N/A seed 8 79 Rattus norvegicus (Norway rat) microRNA rno-mir-124 precursor (rno-mir-124-3) Rattus norvegicus (Norway rat)  
5
URS000075EDDE_9913 N/A seed 8 79 Bos taurus (cattle) microRNA bta-mir-124b precursor Bos taurus (cattle)  
6
URS000075EDDE_9600 N/A seed 8 79 Pongo pygmaeus (Bornean orangutan) microRNA ppy-mir-124 precursor (ppy-mir-124-2) Pongo pygmaeus (Bornean orangutan)  
7
URS000075B1A2_9031 N/A seed 9 80 Gallus gallus (chicken) microRNA gga-mir-124a precursor (gga-mir-124a-2) Gallus gallus (chicken)  
8
URS0000A97F5B_8255 N/A seed 1 60 Paralichthys olivaceus (Japanese flounder) microRNA pol-mir-124 precursor Paralichthys olivaceus (Japanese flounder)  
9
URS00007E40F7_28377 N/A seed 14 85 Anolis carolinensis (green anole) microRNA aca-mir-124a precursor (aca-mir-124a-2) Anolis carolinensis (green anole)  
10
URS0000D4FBEE_8665 N/A seed 3 74 Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-2) Ophiophagus hannah (king cobra)  
11
URS00007E34E8_9615 N/A seed 1 58 Canis lupus familiaris (dog) microRNA cfa-mir-124 precursor (cfa-mir-124-3) Canis lupus familiaris (dog)  
12
URS000075E737_7955 N/A seed 21 92 Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-6) Danio rerio (zebrafish)  
13
URS0000D50E65_7998 N/A seed 1 58 Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-5) Ictalurus punctatus (channel catfish)  
14
URS000075A6DC_31033 N/A seed 6 78 Takifugu rubripes (torafugu) microRNA fru-mir-124 precursor (fru-mir-124-2) Takifugu rubripes  
15
URS0000A8C755_99883 N/A seed 3 75 Tetraodon nigroviridis (spotted green pufferfish) microRNA tni-mir-124 precursor (tni-mir-124-2) Tetraodon nigroviridis  
16
URS000075A939_9606 N/A seed 7 79 Homo sapiens (human) microRNA hsa-mir-124 precursor (hsa-mir-124-1) Homo sapiens (human)  
17
URS0000D546C5_29078 N/A seed 4 76 Eptesicus fuscus (big brown bat) microRNA efu-mir-124 precursor (efu-mir-124-1) Eptesicus fuscus (big brown bat)  
18
URS000075A939_10090 N/A seed 7 79 Mus musculus (house mouse) microRNA mmu-mir-124 precursor (mmu-mir-124-1) Mus musculus (house mouse)  
19
URS000075A939_10116 N/A seed 7 79 Rattus norvegicus (Norway rat) microRNA rno-mir-124 precursor (rno-mir-124-1) Rattus norvegicus (Norway rat)  
20
URS000075A939_9823 N/A seed 7 79 Sus scrofa (pig) microRNA ssc-mir-124a precursor (ssc-mir-124a-2) Sus scrofa (pig)  
21
URS000075A939_9913 N/A seed 7 79 Bos taurus (cattle) microRNA bta-mir-124a precursor (bta-mir-124a-1) Bos taurus (cattle)  
22
URS000075A939_13616 N/A seed 7 79 Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-124a precursor (mdo-mir-124a-1) Monodelphis domestica (gray short-tailed opossum)  
23
URS000075A939_9544 N/A seed 7 79 Macaca mulatta (Rhesus monkey) microRNA mml-mir-124a precursor (mml-mir-124a-2) Macaca mulatta (Rhesus monkey)  
24
URS00007E40FB_28377 N/A seed 14 86 Anolis carolinensis (green anole) microRNA aca-mir-124b precursor Anolis carolinensis (green anole)  
25
URS0000D53CEF_8665 N/A seed 3 75 Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-4) Ophiophagus hannah (king cobra)  
26
URS00007E41DA_9615 N/A seed 1 59 Canis lupus familiaris (dog) microRNA cfa-mir-124 precursor (cfa-mir-124-1) Canis lupus familiaris (dog)  
27
URS000075DA8A_7955 N/A seed 6 78 Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-2) Danio rerio (zebrafish)  
28
URS0000D55227_7998 N/A seed 1 59 Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-1) Ictalurus punctatus (channel catfish)  
29
URS000075B6D4_59729 N/A seed 1 67 Taeniopygia guttata (zebra finch) microRNA tgu-mir-124 precursor (tgu-mir-124-2) Taeniopygia guttata  
30
URS0000D51439_8665 N/A seed 35 105 Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-1) Ophiophagus hannah (king cobra)  
31
URS000075AE45_9796 N/A seed 1 68 Equus caballus (horse) microRNA eca-mir-124 precursor (eca-mir-124-1) Equus caballus (horse)  
32
URS000075D521_7955 N/A seed 32 103 Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-5) Danio rerio (zebrafish)  
33
URS0000D524E2_7998 N/A seed 1 58 Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-2) Ictalurus punctatus (channel catfish)  
34
URS0000812154_31033 N/A seed 7 77 Takifugu rubripes (torafugu) microRNA fru-mir-124 precursor (fru-mir-124-1, fru-mir-124-4) Takifugu rubripes  
35
URS000075CCD5_8090 N/A seed 11 81 Oryzias latipes (Japanese medaka) microRNA ola-mir-124 precursor (ola-mir-124-3) Oryzias latipes (Japanese medaka)  
36
URS000075A274_13616 N/A seed 1 68 Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-124a precursor (mdo-mir-124a-3) Monodelphis domestica (gray short-tailed opossum)  
37
URS000075D323_8090 N/A seed 16 87 Oryzias latipes (Japanese medaka) microRNA ola-mir-124 precursor (ola-mir-124-1) Oryzias latipes (Japanese medaka)  
38
URS000023AB58_9606 N/A seed 19 88 Homo sapiens (human) microRNA hsa-mir-124 precursor (hsa-mir-124-2) Homo sapiens (human)  
39
URS0000BC45D6_9593 N/A seed 19 88 Gorilla gorilla (western gorilla) microRNA ggo-mir-124a precursor Gorilla gorilla (western gorilla)  
40
URS000023AB58_9597 N/A seed 19 88 Pan paniscus (pygmy chimpanzee) microRNA ppa-mir-124a precursor Pan paniscus (pygmy chimpanzee)  
41
URS000023AB58_9598 N/A seed 19 88 Pan troglodytes (chimpanzee) microRNA ptr-mir-124a precursor Pan troglodytes (chimpanzee)  
42
URS000075E86C_10090 N/A seed 19 88 Mus musculus (house mouse) microRNA mmu-mir-124 precursor (mmu-mir-124-2) Mus musculus (house mouse)  
43
URS000075E86C_10116 N/A seed 19 88 Rattus norvegicus (Norway rat) microRNA rno-mir-124 precursor (rno-mir-124-2) Rattus norvegicus (Norway rat)  
44
URS00001A7A18_9509 N/A seed 19 88 Ateles geoffroyi (black-handed spider monkey) microRNA age-mir-124a precursor Ateles geoffroyi (black-handed spider monkey)  
45
URS000051F272_9544 N/A seed 19 88 Macaca mulatta (Rhesus monkey) microRNA mml-mir-124a precursor (mml-mir-124a-1) Macaca mulatta (Rhesus monkey)  
46
URS0000453EAF_9600 N/A seed 19 88 Pongo pygmaeus (Bornean orangutan) microRNA ppy-mir-124a precursor Pongo pygmaeus (Bornean orangutan)  
47
URS00001ECCF4_9519 N/A seed 19 88 Lagothrix lagotricha (brown woolly monkey) microRNA lla-mir-124a precursor Lagothrix lagotricha (brown woolly monkey)  
48
URS000075E29D_9913 N/A seed 17 86 Bos taurus (cattle) microRNA bta-mir-124a precursor (bta-mir-124a-2) Bos taurus (cattle)  
49
URS00007E4F26_9925 N/A seed 17 86 Capra hircus (goat) microRNA chi-mir-124a precursor Capra hircus (goat)  
50
URS000075D45E_9823 N/A seed 16 85 Sus scrofa (pig) microRNA ssc-mir-124a precursor (ssc-mir-124a-1) Sus scrofa (pig)  
51
URS0000D52B7E_29078 N/A seed 5 74 Eptesicus fuscus (big brown bat) microRNA efu-mir-124 precursor (efu-mir-124-2) Eptesicus fuscus (big brown bat)  
52
URS000075A3E1_9031 N/A seed 8 78 Gallus gallus (chicken) microRNA gga-mir-124a precursor Gallus gallus (chicken)  
53
URS0000D54D1F_7998 N/A seed 1 57 Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-3) Ictalurus punctatus (channel catfish)  
54
URS000075E5BB_7955 N/A seed 24 94 Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-3) Danio rerio (zebrafish)  
55
URS0000466435_10029 N/A seed 6 75 Cricetulus griseus (Chinese hamster) microRNA cgr-mir-124 precursor Cricetulus griseus (Chinese hamster)  
56
URS000075D8B4_13616 N/A seed 13 83 Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-124a precursor (mdo-mir-124a-2) Monodelphis domestica (gray short-tailed opossum)  
57
URS0000A8FA4E_99883 N/A seed 1 67 Tetraodon nigroviridis (spotted green pufferfish) microRNA tni-mir-124 precursor (tni-mir-124-1) Tetraodon nigroviridis  
58
URS00007E3868_28377 N/A seed 18 88 Anolis carolinensis (green anole) microRNA aca-mir-124a precursor (aca-mir-124a-1) Anolis carolinensis (green anole)  
59
URS000075B845_8364 N/A seed 10 80 Xenopus tropicalis (tropical clawed frog) microRNA xtr-mir-124 precursor Xenopus (Silurana) tropicalis (western clawed frog)  
60
URS000075AFCA_59729 N/A seed 37 107 Taeniopygia guttata (zebra finch) microRNA tgu-mir-124 precursor (tgu-mir-124-1) Taeniopygia guttata  
61
URS00007E49D1_9615 N/A seed 1 57 Canis lupus familiaris (dog) microRNA cfa-mir-124 precursor (cfa-mir-124-2) Canis lupus familiaris (dog)  
62
URS000075E409_7955 N/A seed 7 77 Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-1) Danio rerio (zebrafish)  
63
URS00007E47E2_28377 N/A seed 14 85 Anolis carolinensis (green anole) microRNA aca-mir-124a precursor (aca-mir-124a-3) Anolis carolinensis (green anole)  
64
URS000075D1F7_9258 N/A seed 11 83 Ornithorhynchus anatinus (platypus) microRNA oan-mir-124a precursor (oan-mir-124a-1) Ornithorhynchus anatinus (platypus)  
65
URS00007E4458_9258 N/A seed 1 60 Ornithorhynchus anatinus (platypus) microRNA oan-mir-124a precursor (oan-mir-124a-2) Ornithorhynchus anatinus (platypus)  
66
URS0000D54412_7757 N/A seed 5 75 Petromyzon marinus (sea lamprey) microRNA pma-mir-124 precursor Petromyzon marinus (sea lamprey)  
67
URS000075B9C2_8090 N/A seed 16 87 Oryzias latipes (Japanese medaka) microRNA ola-mir-124 precursor (ola-mir-124-2) Oryzias latipes (Japanese medaka)  
68
URS00004E424E_7230 N/A seed 16 83 Drosophila mojavensis microRNA dmo-mir-124 precursor Drosophila mojavensis  
69
URS00004E424E_7244 N/A seed 16 83 Drosophila virilis microRNA dvi-mir-124 precursor Drosophila virilis  
70
URS000050A180_7222 N/A seed 16 83 Drosophila grimshawi microRNA dgr-mir-124 precursor Drosophila grimshawi  
71
URS00004D05FC_7217 N/A seed 16 83 Drosophila ananassae microRNA dan-mir-124 precursor Drosophila ananassae  
72
URS00001BC32D_7237 N/A seed 16 83 Drosophila pseudoobscura microRNA dps-mir-124 precursor Drosophila pseudoobscura  
73
URS000001B5F1_7234 N/A seed 16 83 Drosophila persimilis microRNA dpe-mir-124 precursor Drosophila persimilis  
74
URS0000320AE8_7227 N/A seed 16 83 Drosophila melanogaster (fruit fly) microRNA dme-mir-124 precursor Drosophila melanogaster (fruit fly)  
75
URS0000513D18_7220 N/A seed 8 75 Drosophila erecta microRNA der-mir-124 precursor Drosophila erecta  
76
URS0000513D18_7238 N/A seed 8 75 Drosophila sechellia microRNA dse-mir-124 precursor Drosophila sechellia  
77
URS0000513D18_7240 N/A seed 8 75 Drosophila simulans microRNA dsi-mir-124 precursor Drosophila simulans  
78
URS0000513D18_7245 N/A seed 8 75 Drosophila yakuba microRNA dya-mir-124 precursor Drosophila yakuba  
79
URS0000606C6A_7260 N/A seed 16 83 Drosophila willistoni microRNA dwi-mir-124 precursor Drosophila willistoni  
80
URS0000D5033B_7159 N/A seed 3 76 Aedes aegypti (yellow fever mosquito) microRNA aae-mir-124 precursor Aedes aegypti (yellow fever mosquito)  
81
URS00000C1BEA_7165 N/A seed 6 79 Anopheles gambiae (African malaria mosquito) microRNA aga-mir-124 precursor Anopheles gambiae (African malaria mosquito)  
82
URS0000D4F7B2_7176 N/A seed 3 76 Culex quinquefasciatus (southern house mosquito) microRNA cqu-mir-124 precursor Culex quinquefasciatus (southern house mosquito)  
83
URS000075A1AD_7091 N/A seed 7 80 Bombyx mori (domestic silkworm) microRNA bmo-mir-124 precursor Bombyx mori (domestic silkworm)  
84
URS0000D502C8_7130 N/A seed 17 90 Manduca sexta (tobacco hornworm) microRNA mse-mir-124 precursor Manduca sexta (tobacco hornworm)  
85
URS0000D550A2_6669 N/A seed 12 87 Daphnia pulex (common water flea) microRNA dpu-mir-124 precursor Daphnia pulex  
86
URS000075BF30_7029 N/A seed 1 60 Acyrthosiphon pisum (pea aphid) microRNA api-mir-124 precursor Acyrthosiphon pisum (pea aphid)  
87
URS0000D5117C_34740 N/A seed 21 92 Heliconius melpomene (postman butterfly) microRNA hme-mir-124 precursor Heliconius melpomene  
88
URS00006B610C_7070 N/A seed 5 74 Tribolium castaneum (red flour beetle) microRNA tca-mir-124 precursor Tribolium castaneum (red flour beetle)  
89
URS000075B27C_7460 N/A seed 1 77 Apis mellifera (honey bee) microRNA ame-mir-124 precursor Apis mellifera (honey bee)  
90
URS000075C5D0_7425 N/A seed 1 77 Nasonia vitripennis (jewel wasp) microRNA nvi-mir-124 precursor Nasonia vitripennis (jewel wasp)  
91
URS0000D55FB5_6945 N/A seed 16 87 Ixodes scapularis (black-legged tick) microRNA isc-mir-124 precursor Ixodes scapularis (black-legged tick)  
92
URS000075AF70_7668 N/A seed 15 87 Strongylocentrotus purpuratus microRNA spu-mir-124 precursor Strongylocentrotus purpuratus  
93
URS0000D51E39_7654 N/A seed 15 87 Lytechinus variegatus (green sea urchin) microRNA lva-mir-124 precursor Lytechinus variegatus (green sea urchin)  
94
URS0000D516F4_46514 N/A seed 15 90 Patiria miniata microRNA pmi-mir-124 precursor Patiria miniata  
95
URS000075D648_10224 N/A seed 15 86 Saccoglossus kowalevskii microRNA sko-mir-124 precursor Saccoglossus kowalevskii  
96
URS0000D51F70_7739 N/A seed 17 87 Branchiostoma floridae (Florida lancelet) microRNA bfl-mir-124 precursor Branchiostoma floridae (Florida lancelet)  
97
URS0000D51F70_7741 N/A seed 17 87 Branchiostoma belcheri (Belcher's lancelet) microRNA bbe-mir-124 precursor Branchiostoma belcheri (Belcher's lancelet)  
98
URS0000D4F562_32264 N/A seed 1 74 Tetranychus urticae (two-spotted spider mite) microRNA tur-mir-124 precursor (tur-mir-124-2) Tetranychus urticae (two-spotted spider mite)  
99
URS0000D5405F_32264 N/A seed 21 94 Tetranychus urticae (two-spotted spider mite) microRNA tur-mir-124 precursor (tur-mir-124-1) Tetranychus urticae (two-spotted spider mite)  
100
URS0000D541B5_225164 N/A seed 16 87 Lottia gigantea (owl limpet) microRNA lgi-mir-124 precursor Lottia gigantea  
101
URS000075AA01_31033 N/A seed 7 78 Takifugu rubripes (torafugu) microRNA fru-mir-124 precursor (fru-mir-124-3) Takifugu rubripes  
102
URS0000D528AB_99883 N/A seed 7 78 Tetraodon nigroviridis (spotted green pufferfish) microRNA tni-mir-124 precursor (tni-mir-124-3) Tetraodon nigroviridis  
103
URS000075EA85_7955 N/A seed 7 78 Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-4) Danio rerio (zebrafish)  
104
URS000075C474_7719 N/A seed 4 73 Ciona intestinalis microRNA cin-mir-124 precursor (cin-mir-124-1) Ciona intestinalis  
105
URS0000A9EEA2_51511 N/A seed 23 92 Ciona savignyi microRNA csa-mir-124 precursor (csa-mir-124-1) Ciona savignyi  
106
URS000075CFEE_7719 N/A seed 21 90 Ciona intestinalis microRNA cin-mir-124 precursor (cin-mir-124-2) Ciona intestinalis  
107
URS0000A836A6_51511 N/A seed 23 92 Ciona savignyi microRNA csa-mir-124 precursor (csa-mir-124-2) Ciona savignyi  
108
URS0000D53DA2_283909 N/A seed 16 87 Capitella teleta microRNA cte-mir-124 precursor Capitella teleta  
109
URS0000D56B1D_242395 N/A seed 18 90 Xenoturbella bocki microRNA xbo-mir-124 precursor Xenoturbella bocki  
110
URS0000AB04F9_7998 N/A seed 1 58 Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-4) Ictalurus punctatus (channel catfish)  
111
URS0000D569FB_8665 N/A seed 3 73 Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-3) Ophiophagus hannah (king cobra)  
112
URS000075B14D_9796 N/A seed 1 56 Equus caballus (horse) microRNA eca-mir-124 precursor (eca-mir-124-2) Equus caballus (horse)  
113
URS000075EC27_9031 N/A seed 8 77 Gallus gallus (chicken) microRNA gga-mir-124b precursor Gallus gallus (chicken)  
114
URS00002458B9_31234 N/A seed 8 85 Caenorhabditis remanei microRNA crm-mir-124a precursor Caenorhabditis remanei  
115
URS0000D504D2_135651 N/A seed 1 64 Caenorhabditis brenneri microRNA cbn-mir-124 precursor (cbn-mir-124-1, cbn-mir-124-2) Caenorhabditis brenneri  
116
URS0000D55DDB_6238 N/A seed 10 87 Caenorhabditis briggsae microRNA cbr-mir-124a precursor Caenorhabditis briggsae  
117
URS0000324A65_6239 N/A seed 10 87 Caenorhabditis elegans microRNA cel-mir-124 precursor Caenorhabditis elegans  
118
URS0000D54FBE_6289 N/A seed 16 83 Haemonchus contortus (barber pole worm) microRNA hco-mir-124 precursor Haemonchus contortus  
119
URS0000D4F335_6233 N/A seed 1 60 Panagrellus redivivus microRNA prd-mir-124 precursor Panagrellus redivivus  
120
URS0000D5361C_54126 N/A seed 15 87 Pristionchus pacificus microRNA ppc-mir-124 precursor Pristionchus pacificus  
121
URS0000D55D68_6253 N/A seed 3 72 Ascaris suum (pig roundworm) microRNA asu-mir-124 precursor Ascaris suum (pig roundworm)  
0
QEPC01014500.1 87.70 full 818,274 818,344 QEPC01014500.1 Sphenodon punctatus isolate mauimua-1 ScrUdWx_1759, whole genome shotgun sequence Sphenodon punctatus (tuatara) ENA graphic
1
AZIM01001477.1 86.90 full 191,578 191,648 Ophiophagus hannah scaffold1478.1, whole genome shotgun sequence. Ophiophagus hannah (king cobra) ENA graphic
2
BHFT01000111.1 86.90 full 39,856 39,926 BHFT01000111.1 Laticauda laticaudata KUZ Laticauda laticaudata (blue-ringed sea krait) ENA graphic
3
CM000370.1 86.90 full 173,742,304 173,742,234 Monodelphis domestica chromosome 3, whole genome shotgun sequence. Monodelphis domestica (gray short-tailed opossum) ENA graphic
4
CM019150.1 86.90 full 182,506,870 182,506,940 CM019150.1 Naja naja isolate NN01 chromosome 3, whole genome shotgun sequence Naja naja ENA graphic
5
KL891695.1 86.90 full 385,913 385,843 KL891695.1 Tinamus guttatus isolate BGI_N309 unplaced genomic scaffold scaffold3824, whole genome shotgun sequence Tinamus guttatus ENA graphic
6
LR735554.1 86.90 full 456,666,972 456,666,902 LR735554.1 Sarcophilus harrisii genome assembly, chromosome: 1 Sarcophilus harrisii (Tasmanian devil) ENA graphic
7
NW_013658004.1 86.90 full 706,686 706,616 NW_013658004.1 Thamnophis sirtalis isolate EDBJR-23777 unplaced genomic scaffold, Thamnophis_sirtalis-6.0 Scaffold324, whole genome shotgun sequence Thamnophis sirtalis ENA graphic
8
NW_018344046.1 86.90 full 7,666,552 7,666,482 NW_018344046.1 Phascolarctos cinereus isolate Bilbo 61053 unplaced genomic scaffold, phaCin_unsw_v4.1 phaCin_unsw_v4.1.fa.scaf00095, whole genome shotgun sequence Phascolarctos cinereus (koala) ENA graphic
9
NW_020716616.1 86.90 full 21,175,509 21,175,439 NW_020716616.1 Notechis scutatus unplaced genomic scaffold, TS10Xv2-PRI ULFQ01000006.1, whole genome shotgun sequence Notechis scutatus ENA graphic
10
NW_023010796.1 86.90 full 34,549,938 34,550,008 NW_023010796.1 Pantherophis guttatus isolate EG266 unplaced genomic scaffold, UNIGE_PanGut_3.0 Super-Scaffold_450, whole genome shotgun sequence Pantherophis guttatus ENA graphic
11
SJPD01000018.1 86.90 full 13,668,617 13,668,547 SJPD01000018.1 Varanus komodoensis strain SLA01 scaffold14_1, whole genome shotgun sequence Varanus komodoensis ENA graphic
12
ULFR01000031.1 86.90 full 12,095,273 12,095,203 ULFR01000031.1 Pseudonaja textilis genome assembly, contig: ahap_PSETE__EBS10XV2AHAP231, whole genome shotgun sequence Pseudonaja textilis ENA graphic
13
UNPS02014812.1 86.90 full 10,158,858 10,158,928 UNPS02014812.1 Vombatus ursinus genome assembly, contig: WM1_genome_scaffold14812, whole genome shotgun sequence Vombatus ursinus (common wombat) ENA graphic
14
UNPS02014812.1 86.90 full 86,116,521 86,116,591 UNPS02014812.1 Vombatus ursinus genome assembly, contig: WM1_genome_scaffold14812, whole genome shotgun sequence Vombatus ursinus (common wombat) ENA graphic
15
CM000322.4 86.90 full 65,469,888 65,469,958 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 8, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
16
CM000670.2 86.90 full 64,379,166 64,379,236 Homo sapiens chromosome 8, GRCh38 reference primary assembly. Homo sapiens (human) ENA graphic
17
CM000996.3 86.90 full 17,849,843 17,849,913 CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J Mus musculus (house mouse) ENA graphic
18
CM003391.1 86.90 full 62,587,948 62,588,018 CM003391.1 Pan paniscus isolate Ulindi chromosome 8, whole genome shotgun sequence Pan paniscus (pygmy chimpanzee) ENA graphic
19
CM026975.1 86.90 full 100,134,883 100,134,953 CM026975.1 Rattus norvegicus strain BN/NHsdMcwi chromosome 2, whole genome shotgun sequence Rattus norvegicus (Norway rat) ENA graphic
20
FR853101.2 86.90 full 51,160,889 51,160,819 Gorilla gorilla gorilla genomic chromosome, chr8, whole genome shotgun sequence Gorilla gorilla gorilla (western lowland gorilla) ENA graphic
21
NW_007261356.1 86.90 full 54,563 54,633 NW_007261356.1 Carlito syrichta isolate Samal-C Ts95f unplaced genomic scaffold, Tarsius_syrichta-2.0.1 Scaffold317260, whole genome shotgun sequence Carlito syrichta (Philippine tarsier) ENA graphic
22
QGOO02000013.1 86.90 full 14,228,282 14,228,352 QGOO02000013.1 Mus spicilegus strain ZRU musp714_scaffold_00013b, whole genome shotgun sequence Mus spicilegus (steppe mouse) ENA graphic
23
KI635902.1 86.60 full 2,043,226 2,043,296 KI635902.1 Callorhinchus milii isolate IMCB2004 unplaced genomic scaffold scaffold_48, whole genome shotgun sequence Callorhinchus milii (ghost shark) ENA graphic
24
CM017910.1 86.60 full 4,839,903 4,839,831 CM017910.1 Triplophysa tibetana isolate TTIB1903HZAU chromosome 18, whole genome shotgun sequence Triplophysa tibetana ENA graphic
25
CM045787.1 86.60 full 4,860,283 4,860,211 CM045787.1 Triplophysa rosa linkage group LG15, whole genome shotgun sequence Triplophysa rosa (cave loach) ENA graphic
26
LR535826.1 86.60 full 10,493,796 10,493,724 LR535826.1 Denticeps clupeoides genome assembly, chromosome: 14 Denticeps clupeoides (denticle herring) ENA graphic
27
NC_044498.1 86.60 full 26,480,482 26,480,410 NC_044498.1 Chanos chanos chromosome 4, fChaCha1.1, whole genome shotgun sequence Chanos chanos (milkfish) ENA graphic
28
RBHW02000005.1 86.60 full 1,120,918 1,120,990 RBHW02000005.1 Electrophorus electricus isolate MRS-EE1 scaffold18, whole genome shotgun sequence Electrophorus electricus (electric eel) ENA graphic
29
CP026263.1 86.60 full 2,909,651 2,909,721 CP026263.1 Scophthalmus maximus chromosome 21 Scophthalmus maximus (turbot) ENA graphic
30
LR131990.1 86.50 full 17,628,701 17,628,771 LR131990.1 Gouania willdenowi genome assembly, chromosome: 20 Gouania willdenowi (blunt-snouted clingfish) ENA graphic
31
CM034098.1 86.50 full 57,794,968 57,794,897 CM034098.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 13, whole genome shotgun sequence Eleutherodactylus coqui (Puerto Rican coqui) ENA graphic
32
QVOM02000029.1 86.50 full 51,329,713 51,329,643 QVOM02000029.1 Salvator merianae strain LG2117 Scaffold_29, whole genome shotgun sequence Tupinambis merianae ENA graphic
33
NW_006536552.1 86.40 full 32,702 32,632 NW_006536552.1 Python bivittatus unplaced genomic scaffold, Python_molurus_bivittatus-5.0.2 Scaffold4538, whole genome shotgun sequence Python molurus bivittatus (Burmese python) ENA graphic
34
CM031323.1 86.40 full 18,278,799 18,278,729 CM031323.1 Anguilla anguilla isolate tag_6206 chromosome 4, whole genome shotgun sequence Anguilla anguilla (European eel) ENA graphic
35
CM040756.1 86.40 full 17,586,181 17,586,111 CM040756.1 Albula goreensis ecotype Florida chromosome 16, whole genome shotgun sequence Albula goreensis ENA graphic
36
CM056377.1 86.40 full 115,456,018 115,455,948 CM056377.1 Synaphobranchus kaupii isolate WJC10195 ecotype Taiwan chromosome 2, whole genome shotgun sequence Synaphobranchus kaupii (Kaup's arrowtooth eel) ENA graphic
37
JAFBMS010000012.1 86.40 full 10,575,158 10,575,088 JAFBMS010000012.1 Albula glossodonta isolate HI-2016 scaffold_11, whole genome shotgun sequence Albula glossodonta (roundjaw bonefish) ENA graphic
38
VZSX01000056.1 86.40 full 5,173,154 5,173,224 VZSX01000056.1 Eudromia elegans voucher LSUMZ:Ornithology:B16893 isolate B10K-LSUMZ-16893 scaffold_55, whole genome shotgun sequence Eudromia elegans (elegant crested-tinamou) ENA graphic
39
CM029059.1 86.30 full 47,674,327 47,674,397 CM029059.1 Polypterus senegalus isolate Bchr_013 chromosome 5, whole genome shotgun sequence Polypterus senegalus ENA graphic
40
LR536437.2 86.30 full 51,762,179 51,762,249 LR536437.2 Erpetoichthys calabaricus genome assembly, chromosome: 6 Erpetoichthys calabaricus (reedfish) ENA graphic
41
NW_018151492.1 86.30 full 156,662 156,592 NW_018151492.1 Pogona vitticeps unplaced genomic scaffold, pvi1.1.0 contig14579, whole genome shotgun sequence Pogona vitticeps (central bearded dragon) ENA graphic
42
BFAA01017286.1 86.30 full 17,084 17,154 BFAA01017286.1 Scyliorhinus torazame DNA, scf_scyto00017286, whole genome shotgun sequence Scyliorhinus torazame (cloudy catshark) ENA graphic
43
AKCR02000001.1 86.20 full 36,133,624 36,133,554 AKCR02000001.1 Columba livia breed Danish Tumbler ScoHet5_20, whole genome shotgun sequence Columba livia (Rock pigeon) ENA graphic
44
BJBX01025817.1 86.20 full 89 159 BJBX01025817.1 Accipiter nisus DNA, Acni_25817, cell line: 158A, whole genome shotgun sequence Accipiter nisus (Eurasian sparrowhawk) ENA graphic
45
CM001990.1 86.20 full 120,676,305 120,676,375 Ficedula albicollis isolate OC2 chromosome 2, whole genome shotgun sequence. Ficedula albicollis ENA graphic
46
CM002017.1 86.20 full 35,782,381 35,782,451 Ficedula albicollis isolate OC2 chromosome Z, whole genome shotgun sequence. Ficedula albicollis ENA graphic
47
CM002656.2 86.20 full 160,354,943 160,354,873 CM002656.2 Chrysemys picta bellii isolate RCT428 chromosome 2, whole genome shotgun sequence Chrysemys picta bellii (western painted turtle) ENA graphic
48
CM008539.1 86.20 full 120,853,763 120,853,833 CM008539.1 Anas platyrhynchos platyrhynchos breed Pekin duck chromosome 2, whole genome shotgun sequence Anas platyrhynchos platyrhynchos (common mallard) ENA graphic
49
CM012083.2 86.20 full 115,909,145 115,909,215 CM012083.2 Taeniopygia guttata isolate Black17 chromosome 2, whole genome shotgun sequence Taeniopygia guttata ENA graphic
50
CM013761.2 86.20 full 36,146,119 36,146,049 CM013761.2 Strigops habroptila isolate Jane chromosome 1, whole genome shotgun sequence Strigops habroptila (kakapo) ENA graphic
51
CM018620.1 86.20 full 104,565,443 104,565,513 CM018620.1 Cairina moschata domestica isolate CanardBarbarie3_02_2015_G chromosome 2, whole genome shotgun sequence Cairina moschata domestica (muscovy duck (domestic type)) ENA graphic
52
CM018620.1 86.20 full 104,587,532 104,587,602 CM018620.1 Cairina moschata domestica isolate CanardBarbarie3_02_2015_G chromosome 2, whole genome shotgun sequence Cairina moschata domestica (muscovy duck (domestic type)) ENA graphic
53
CM019215.1 86.20 full 35,207,243 35,207,173 CM019215.1 Malurus cyaneus samueli chromosome 2, whole genome shotgun sequence Malurus cyaneus samueli ENA graphic
54
CM020336.1 86.20 full 124,363,358 124,363,428 CM020336.1 Catharus ustulatus isolate bCatUst1 chromosome 1, whole genome shotgun sequence Catharus ustulatus ENA graphic
55
CM032898.1 86.20 full 3,989,723 3,989,653 CM032898.1 Megalops atlanticus isolate YG-15Mar2019-1 chromosome 24, whole genome shotgun sequence Megalops atlanticus (tarpon) ENA graphic
56
CM034093.1 86.20 full 37,818,509 37,818,439 CM034093.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 8, whole genome shotgun sequence Eleutherodactylus coqui (Puerto Rican coqui) ENA graphic
57
CM035634.1 86.20 full 64,980,153 64,980,083 CM035634.1 Mauremys mutica isolate MM-2020 ecotype Southern chromosome 2, whole genome shotgun sequence Mauremys mutica ENA graphic
58
CM040304.1 86.20 full 115,585,640 115,585,710 CM040304.1 Lamprotornis superbus isolate SS15 chromosome 2, whole genome shotgun sequence Lamprotornis superbus ENA graphic
59
CM040743.1 86.20 full 8,103,268 8,103,338 CM040743.1 Albula goreensis ecotype Florida chromosome 3, whole genome shotgun sequence Albula goreensis ENA graphic
60
CM042575.1 86.20 full 116,841,160 116,841,230 CM042575.1 Junco hyemalis ecotype carolinensis chromosome 2, whole genome shotgun sequence Junco hyemalis (dark-eyed junco) ENA graphic
61
CM056182.1 86.20 full 20,020,122 20,020,192 CM056182.1 Conger conger isolate Concon-B chromosome 9, whole genome shotgun sequence Conger conger ENA graphic
62
CM056394.1 86.20 full 15,782,739 15,782,809 CM056394.1 Synaphobranchus kaupii isolate WJC10195 ecotype Taiwan chromosome 19, whole genome shotgun sequence Synaphobranchus kaupii (Kaup's arrowtooth eel) ENA graphic
63
HG009209.1 86.20 full 55,456,591 55,456,521 HG009209.1 Serinus canaria genomic scaffold, SCA1_u1, whole genome shotgun sequence Serinus canaria (common canary) ENA graphic
64
JAFBMS010000001.1 86.20 full 3,755,747 3,755,817 JAFBMS010000001.1 Albula glossodonta isolate HI-2016 scaffold_0, whole genome shotgun sequence Albula glossodonta (roundjaw bonefish) ENA graphic
65
JH556613.1 86.20 full 2,567,749 2,567,679 JH556613.1 Melopsittacus undulatus unplaced genomic scaffold budgerigar_v6.3_scf900160277066, whole genome shotgun sequence Melopsittacus undulatus (budgerigar) ENA graphic
66
JJRK01026698.1 86.20 full 793 863 Leptosomus discolor contig26698, whole genome shotgun sequence. Leptosomus discolor ENA graphic
67
JJRN01004472.1 86.20 full 258 328 Fulmarus glacialis contig4472, whole genome shotgun sequence. Fulmarus glacialis (northern fulmar) ENA graphic
68
JMFJ01105919.1 86.20 full 47 117 Chlamydotis undulata macqueenii contig105919, whole genome shotgun sequence. Chlamydotis undulata macqueenii ENA graphic
69
JMFV01054668.1 86.20 full 403 473 Apaloderma vittatum contig54668, whole genome shotgun sequence. Apaloderma vittatum ENA graphic
70
KB533245.1 86.20 full 1,285,998 1,285,928 KB533245.1 Chelonia mydas unplaced genomic scaffold scaffold311, whole genome shotgun sequence Chelonia mydas (green seaturtle) ENA graphic
71
KB742428.1 86.20 full 524,953 525,023 KB742428.1 Anas platyrhynchos breed Pekin duck unplaced genomic scaffold scaffold45, whole genome shotgun sequence Anas platyrhynchos ENA graphic
72
KB913038.1 86.20 full 10,945,733 10,945,803 KB913038.1 Zonotrichia albicollis isolate Tan morph unplaced genomic scaffold Scaffold0, whole genome shotgun sequence Zonotrichia albicollis ENA graphic
73
KK501010.1 86.20 full 1,015,189 1,015,119 KK501010.1 Egretta garzetta isolate BGI_Z169 unplaced genomic scaffold scaffold132, whole genome shotgun sequence Egretta garzetta ENA graphic
74
KK554279.1 86.20 full 513 443 KK554279.1 Eurypyga helias isolate BGI_N326 unplaced genomic scaffold scaffold25460, whole genome shotgun sequence Eurypyga helias (sunbittern) ENA graphic
75
KK643731.1 86.20 full 117 187 KK643731.1 Haliaeetus albicilla isolate BGI_N329 unplaced genomic scaffold scaffold36411, whole genome shotgun sequence Haliaeetus albicilla (white-tailed eagle) ENA graphic
76
KK717790.1 86.20 full 547,120 547,190 Corvus brachyrhynchos isolate BGI_N302 unplaced genomic scaffold scaffold230, whole genome shotgun sequence. Corvus brachyrhynchos (American crow) ENA graphic
77
KK735245.1 86.20 full 6,606,814 6,606,884 KK735245.1 Opisthocomus hoazin isolate BGI_N306 unplaced genomic scaffold scaffold65, whole genome shotgun sequence Opisthocomus hoazin ENA graphic
78
KK933718.1 86.20 full 845 915 KK933718.1 Nestor notabilis isolate BGI_N333 unplaced genomic scaffold scaffold19632, whole genome shotgun sequence Nestor notabilis ENA graphic
79
KL206239.1 86.20 full 665,459 665,389 KL206239.1 Struthio camelus australis isolate BGI_N308 unplaced genomic scaffold scaffold124, whole genome shotgun sequence Struthio camelus australis ENA graphic
80
KL216546.1 86.20 full 1,671,492 1,671,422 KL216546.1 Picoides pubescens isolate BGI_N307 unplaced genomic scaffold scaffold136, whole genome shotgun sequence Picoides pubescens (downy woodpecker) ENA graphic
81
KL217835.1 86.20 full 3,047,778 3,047,848 KL217835.1 Calypte anna isolate BGI_N300 unplaced genomic scaffold scaffold3, whole genome shotgun sequence Calypte anna (Anna's hummingbird) ENA graphic
82
KL225490.1 86.20 full 370,370 370,440 KL225490.1 Pygoscelis adeliae isolate BGI_AS28 unplaced genomic scaffold Scaffold329, whole genome shotgun sequence Pygoscelis adeliae (Adelie penguin) ENA graphic
83
KL225664.1 86.20 full 701,407 701,337 KL225664.1 Aptenodytes forsteri isolate BGI_AS27 unplaced genomic scaffold Scaffold396, whole genome shotgun sequence Aptenodytes forsteri (emperor penguin) ENA graphic
84
KL227316.1 86.20 full 546 476 KL227316.1 Pterocles gutturalis isolate BGI_N339 unplaced genomic scaffold scaffold37136, whole genome shotgun sequence Pterocles gutturalis (yellow-throated sandgrouse) ENA graphic
85
KL354438.1 86.20 full 763 693 KL354438.1 Caprimulgus carolinensis isolate BGI_N321 unplaced genomic scaffold scaffold31906, whole genome shotgun sequence Caprimulgus carolinensis (chuck-will's-widow) ENA graphic
86
KL410253.1 86.20 full 591,593 591,663 KL410253.1 Nipponia nippon isolate BGI_Y956 unplaced genomic scaffold Scaffold393, whole genome shotgun sequence Nipponia nippon (crested ibis) ENA graphic
87
KL447843.1 86.20 full 15,357 15,287 Cuculus canorus isolate BGI_N303 unplaced genomic scaffold scaffold206, whole genome shotgun sequence. Cuculus canorus (common cuckoo) ENA graphic
88
KL528926.1 86.20 full 728 658 KL528926.1 Buceros rhinoceros silvestris isolate BGI_N320 unplaced genomic scaffold scaffold40097, whole genome shotgun sequence Buceros rhinoceros silvestris ENA graphic
89
KL670064.1 86.20 full 437,146 437,076 KL670064.1 Manacus vitellinus isolate BGI_N305 unplaced genomic scaffold scaffold383, whole genome shotgun sequence Manacus vitellinus (golden-collared manakin) ENA graphic
90
KL872865.1 86.20 full 671,191 671,121 KL872865.1 Charadrius vociferus isolate BGI_N301 unplaced genomic scaffold scaffold167, whole genome shotgun sequence Charadrius vociferus ENA graphic
91
KN126263.1 86.20 full 2,951,150 2,951,220 KN126263.1 Chaetura pelagica isolate M959 unplaced genomic scaffold scaffold83, whole genome shotgun sequence Chaetura pelagica (chimney swift) ENA graphic
92
KZ155862.1 86.20 full 2,198,722 2,198,652 KZ155862.1 Anser cygnoides isolate SCWG-2014 breed Sichuan white goose unplaced genomic scaffold scaffold21, whole genome shotgun sequence Anser cygnoides (Chinese goose) ENA graphic
93
KZ516809.1 86.20 full 4,207 4,277 KZ516809.1 Limosa lapponica baueri isolate BTGAFAM01 unplaced genomic scaffold scaffold11179, whole genome shotgun sequence Limosa lapponica baueri ENA graphic
94
LMAW01002974.1 86.20 full 332,246 332,176 Amazona aestiva scaffold_766, whole genome shotgun sequence. Amazona aestiva (blue-fronted amazon) ENA graphic
95
LR595695.1 86.20 full 116,395,242 116,395,312 LR595695.1 Camarhynchus parvulus genome assembly, chromosome: 2, whole genome shotgun sequence Camarhynchus parvulus ENA graphic
96
LR606184.1 86.20 full 39,312,434 39,312,364 LR606184.1 Aquila chrysaetos chrysaetos genome assembly, chromosome: 4 Aquila chrysaetos chrysaetos ENA graphic
97
LSYS01003169.1 86.20 full 15,641,414 15,641,484 Patagioenas fasciata monilis isolate BTP2013 Sc31e1R_20, whole genome shotgun sequence. Patagioenas fasciata monilis ENA graphic
98
ML689129.1 86.20 full 56,734,219 56,734,289 ML689129.1 Chelydra serpentina unplaced genomic scaffold Scaffold184, whole genome shotgun sequence Chelydra serpentina (snapping turtle) ENA graphic
99
ML980312.1 86.20 full 697,837 697,767 ML980312.1 Bubo bubo isolate eeo-nibr-513 unplaced genomic scaffold scaffold522, whole genome shotgun sequence Bubo bubo ENA graphic
100
ML989766.1 86.20 full 21,246,018 21,245,948 ML989766.1 Buteo japonicus isolate eb-nibr-220 unplaced genomic scaffold scaffold5, whole genome shotgun sequence Buteo japonicus ENA graphic
101
ML996886.1 86.20 full 25,935,620 25,935,690 ML996886.1 Falco tinnunculus isolate ck-nibr-243 unplaced genomic scaffold scaffold58, whole genome shotgun sequence Falco tinnunculus (common kestrel) ENA graphic
102
MU001491.1 86.20 full 62,412,014 62,412,084 MU001491.1 Otus sunia isolate oso-nibr-517 unplaced genomic scaffold scaffold45, whole genome shotgun sequence Otus sunia (Oriental scops-owl) ENA graphic
103
MU273260.1 86.20 full 58,930,855 58,930,925 MU273260.1 Melospiza melodia isolate OUT-0008 unplaced genomic scaffold Super-Scaffold_9, whole genome shotgun sequence Melospiza melodia (song sparrow) ENA graphic
104
MUZQ01000013.1 86.20 full 2,090,368 2,090,298 MUZQ01000013.1 Lonchura striata domestica isolate white83orange57 scaffold_12, whole genome shotgun sequence Lonchura striata domestica (Bengalese finch) ENA graphic
105
NC_045560.1 86.20 full 122,907,912 122,907,982 NC_045560.1 Aythya fuligula isolate bAytFul2 chromosome 2, bAytFul2.pri, whole genome shotgun sequence Aythya fuligula (tufted duck) ENA graphic
106
NIFN02000002.1 86.20 full 33,633,225 33,633,295 NIFN02000002.1 Strix occidentalis caurina voucher CAS:ORN:98821 isolate Sequoia Super-Scaffold_7, whole genome shotgun sequence Strix occidentalis caurina ENA graphic
107
NOIK01000149.1 86.20 full 1,669,028 1,669,098 NOIK01000149.1 Anas zonorhyncha breed spot-billed scaffold151, whole genome shotgun sequence Anas zonorhyncha ENA graphic
108
NW_005054346.1 86.20 full 3,628,461 3,628,391 NW_005054346.1 Geospiza fortis unplaced genomic scaffold, GeoFor_1.0 scaffold121, whole genome shotgun sequence Geospiza fortis ENA graphic
109
NW_014003727.1 86.20 full 765,561 765,491 NW_014003727.1 Apteryx australis mantelli unplaced genomic scaffold, AptMant0 scaffold52 Apteryx australis mantelli ENA graphic
110
NW_016690346.1 86.20 full 1,987,693 1,987,763 NW_016690346.1 Lepidothrix coronata isolate B3197 unplaced genomic scaffold, Lepidothrix_coronata-1.0 Scaffold166, whole genome shotgun sequence Lepidothrix coronata ENA graphic
111
NW_024103862.1 86.20 full 748,222 748,292 NW_024103862.1 Pipra filicauda isolate LSUMZ 115617 unplaced genomic scaffold, ASM394559v2 scaffold138_size1969278_pilon, whole genome shotgun sequence Pipra filicauda ENA graphic
112
NXHY01000063.1 86.20 full 4,324,933 4,325,003 NXHY01000063.1 Anser brachyrhynchus strain PFG001 scaffold_62, whole genome shotgun sequence Anser brachyrhynchus (pink-footed goose) ENA graphic
113
PDCF01000013.1 86.20 full 16,850,635 16,850,565 PDCF01000013.1 Cyanistes caeruleus isolate BT333_1 chromosome 2 chr2_part3, whole genome shotgun sequence Cyanistes caeruleus ENA graphic
114
PKMU01001181.1 86.20 full 428,753 428,683 PKMU01001181.1 Chelonoidis abingdonii isolate Lonesome George Contig1501, whole genome shotgun sequence Geochelone nigra abingdoni ENA graphic
115
PRFB02000059.1 86.20 full 53,968,839 53,968,909 PRFB02000059.1 Terrapene triunguis isolate 2854851 Scaffold58, whole genome shotgun sequence Terrapene carolina triunguis (three-toed box turtle) ENA graphic
116
PTFC01000367.1 86.20 full 670,959 670,889 PTFC01000367.1 Apteryx owenii voucher ROM:ORN:O20599 isolate O20599 scaffold_366, whole genome shotgun sequence Apteryx owenii (little spotted kiwi) ENA graphic
117
QRBI01000104.1 86.20 full 36,432,123 36,432,053 QRBI01000104.1 Hirundo rustica rustica isolate Chelidonia Super-Scaffold_13, whole genome shotgun sequence Hirundo rustica rustica ENA graphic
118
QUSF01000001.1 86.20 full 34,737,359 34,737,429 QUSF01000001.1 Chloebia gouldiae isolate Red01 scaffold_1, whole genome shotgun sequence Erythrura gouldiae (Gouldian finch) ENA graphic
119
QXTE01000033.1 86.20 full 1,679,170 1,679,100 QXTE01000033.1 Platysternon megacephalum isolate DO16091913 scaf33, whole genome shotgun sequence Platysternon megacephalum (big-headed turtle) ENA graphic
120
RQIO01000001.1 86.20 full 37,438,301 37,438,231 RQIO01000001.1 Amazona collaria isolate JAMY3 TDTX972-JAMY3_00001, whole genome shotgun sequence Amazona collaria (yellow-billed parrot) ENA graphic
121
SCEB01000398.1 86.20 full 67,324 67,254 SCEB01000398.1 Acipenser ruthenus isolate WHYD16114868_AA scaffold1157, whole genome shotgun sequence Acipenser ruthenus (sterlet) ENA graphic
122
SCEB01215902.1 86.20 full 500,961 501,031 SCEB01215902.1 Acipenser ruthenus isolate WHYD16114868_AA scaffold391, whole genome shotgun sequence Acipenser ruthenus (sterlet) ENA graphic
123
VULC01019773.1 86.20 full 2,119 2,189 VULC01019773.1 Eudyptula minor isolate Gonzo 94793, whole genome shotgun sequence Eudyptula minor (little blue penguin) ENA graphic
124
VULL01003077.1 86.20 full 251,085 251,155 VULL01003077.1 Eudyptes chrysocome isolate RH 110-1 scaffold_595, whole genome shotgun sequence Eudyptes chrysocome (Rockhopper penguin) ENA graphic
125
VULM01003922.1 86.20 full 2,100 2,170 VULM01003922.1 Aptenodytes patagonicus isolate KP FORT 001 52677, whole genome shotgun sequence Aptenodytes patagonicus (king penguin) ENA graphic
126
VWPO01000166.1 86.20 full 464,940 464,870 VWPO01000166.1 Glareola pratincola voucher LSUMZ:Ornithology:B62518 isolate B10K-CU-031-08 scaffold_164, whole genome shotgun sequence Glareola pratincola ENA graphic
127
VWPP01000923.1 86.20 full 86,610 86,540 VWPP01000923.1 Cochlearius cochlearius voucher LSUMZ:Ornithology:B18469 isolate B10K-CU-031-03 scaffold_917, whole genome shotgun sequence Cochlearius cochlearius ENA graphic
128
VWPU01015665.1 86.20 full 2,141 2,211 VWPU01015665.1 Callaeas wilsoni voucher OTA:GO-YM212792 isolate B10K-OTA-212792 scaffold13950, whole genome shotgun sequence Callaeas wilsoni (north island kokako) ENA graphic
129
VWPV01018811.1 86.20 full 6,512 6,582 VWPV01018811.1 Geococcyx californianus voucher LSUMZ:Ornithology:B58226 isolate B10K-CU-031-07 scaffold14450, whole genome shotgun sequence Geococcyx californianus ENA graphic
130
VWYD01018658.1 86.20 full 168,246 168,176 VWYD01018658.1 Catharus fuscescens voucher USNM:587444 isolate B10K-DU-001-17 scaffold4243, whole genome shotgun sequence Catharus fuscescens ENA graphic
131
VWYE01005342.1 86.20 full 708,283 708,353 VWYE01005342.1 Alaudala cheleensis voucher USNM:586677 isolate B10K-DU-001-15 scaffold1442, whole genome shotgun sequence Calandrella cheleensis ENA graphic
132
VWYF01018373.1 86.20 full 201,352 201,422 VWYF01018373.1 Quiscalus mexicanus voucher USNM:608021 isolate B10K-DU-001-31 scaffold12723, whole genome shotgun sequence Quiscalus mexicanus ENA graphic
133
VWYG01008754.1 86.20 full 50,297 50,227 VWYG01008754.1 Nyctibius grandis voucher USNM:623085 isolate B10K-DU-001-56 scaffold6975, whole genome shotgun sequence Nyctibius grandis ENA graphic
134
VWYI01026209.1 86.20 full 60,225 60,155 VWYI01026209.1 Anthoscopus minutus voucher USNM:642205 isolate B10K-DU-011-42 scaffold12392, whole genome shotgun sequence Anthoscopus minutus ENA graphic
135
VWYJ01009657.1 86.20 full 210,490 210,560 VWYJ01009657.1 Sagittarius serpentarius voucher USNM:587866 isolate B10K-DU-011-38 scaffold686, whole genome shotgun sequence Sagittarius serpentarius ENA graphic
136
VWYM01026814.1 86.20 full 22,078 22,148 VWYM01026814.1 Cinclus mexicanus voucher USNM:630613 isolate B10K-DU-001-77 scaffold887, whole genome shotgun sequence Cinclus mexicanus ENA graphic
137
VWYN01025169.1 86.20 full 1,439,099 1,439,169 VWYN01025169.1 Hippolais icterina voucher USNM:637402 isolate B10K-DU-002-18 scaffold1004, whole genome shotgun sequence Hippolais icterina (icterine warbler) ENA graphic
138
VWYP01016871.1 86.20 full 19,944 20,014 VWYP01016871.1 Pycnonotus jocosus voucher USNM:643381 isolate B10K-DU-002-42 scaffold720, whole genome shotgun sequence Pycnonotus jocosus ENA graphic
139
VWYW01000290.1 86.20 full 576,850 576,920 VWYW01000290.1 Smithornis capensis voucher C:138652 isolate B10K-CU-031-20 scaffold_282, whole genome shotgun sequence Smithornis capensis ENA graphic
140
VWYX01000005.1 86.20 full 220,723 220,793 VWYX01000005.1 Chaetorhynchus papuensis voucher C:163925 isolate B10K-CU-031-19 scaffold_4, whole genome shotgun sequence Chaetorhynchus papuensis (pygmy drongo) ENA graphic
141
VWYY01000009.1 86.20 full 4,775,528 4,775,458 VWYY01000009.1 Ptilorrhoa leucosticta voucher C:138661 isolate B10K-CU-031-17 scaffold_7, whole genome shotgun sequence Ptilorrhoa leucosticta ENA graphic
142
VWYZ01000015.1 86.20 full 4,496,706 4,496,776 VWYZ01000015.1 Rhodinocichla rosea voucher LSUMZ:Ornithology:B26906 isolate B10K-CU-031-12 scaffold_11, whole genome shotgun sequence Rhodinocichla rosea ENA graphic
143
VWZA01001707.1 86.20 full 86,489 86,419 VWZA01001707.1 Oceanites oceanicus voucher LSUMZ:Ornithology:B46846 isolate B10K-CU-031-11 scaffold_1690, whole genome shotgun sequence Oceanites oceanicus ENA graphic
144
VWZC01012312.1 86.20 full 289,331 289,401 VWZC01012312.1 Ciccaba nigrolineata voucher USNM:562545 isolate B10K-DU-001-07 scaffold2353, whole genome shotgun sequence Ciccaba nigrolineata ENA graphic
145
VWZD01012547.1 86.20 full 74,568 74,498 VWZD01012547.1 Sakesphorus luctuosus voucher USNM:562277 isolate B10K-DU-001-06 scaffold1117, whole genome shotgun sequence Sakesphorus luctuosus ENA graphic
146
VWZE01019319.1 86.20 full 1,342,477 1,342,407 VWZE01019319.1 Eubucco bourcierii voucher USNM:542831 isolate B10K-DU-001-04 scaffold1053, whole genome shotgun sequence Eubucco bourcierii (red-headed barbet) ENA graphic
147
VWZF01006750.1 86.20 full 1,462,482 1,462,552 VWZF01006750.1 Sclerurus mexicanus voucher USNM:541572 isolate B10K-DU-001-03 scaffold19, whole genome shotgun sequence Sclerurus mexicanus (tawny-throated leaftosser) ENA graphic
148
VWZG01009712.1 86.20 full 1,031,787 1,031,717 VWZG01009712.1 Grallaria varia voucher USNM:541382 isolate B10K-DU-001-02 scaffold1283, whole genome shotgun sequence Grallaria varia (variegated antpitta) ENA graphic
149
VWZH01000344.1 86.20 full 5,799 5,869 VWZH01000344.1 Dromaius novaehollandiae voucher LSUMZ:Ornithology:B23963 isolate B10K-LSUMZ-23963 scaffold_338, whole genome shotgun sequence Dromaius novaehollandiae (emu) ENA graphic
150
VWZI01019794.1 86.20 full 107,733 107,803 VWZI01019794.1 Psilopogon haemacephalus voucher USNM:607367 isolate B10K-DU-001-24 scaffold5786, whole genome shotgun sequence Psilopogon haemacephalus ENA graphic
151
VWZJ01011157.1 86.20 full 477,479 477,549 VWZJ01011157.1 Hemiprocne comata voucher USNM:607338 isolate B10K-DU-001-23 scaffold919, whole genome shotgun sequence Hemiprocne comata ENA graphic
152
VWZK01010569.1 86.20 full 483,566 483,496 VWZK01010569.1 Baryphthengus martii voucher USNM:606819 isolate B10K-DU-001-21 scaffold137, whole genome shotgun sequence Baryphthengus martii ENA graphic
153
VWZM01010157.1 86.20 full 357,359 357,289 VWZM01010157.1 Loxia leucoptera voucher USNM:601821 isolate B10K-DU-001-19 scaffold216, whole genome shotgun sequence Loxia leucoptera ENA graphic
154
VWZN01013223.1 86.20 full 77,781 77,711 VWZN01013223.1 Regulus satrapa voucher USNM:601552 isolate B10K-DU-001-18 scaffold1900, whole genome shotgun sequence Regulus satrapa (golden-crowned kinglet) ENA graphic
155
VWZP01001429.1 86.20 full 70,557 70,487 VWZP01001429.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 scaffold1049, whole genome shotgun sequence Dicaeum eximium ENA graphic
156
VWZQ01000104.1 86.20 full 530,148 530,218 VWZQ01000104.1 Myiagra hebetior voucher USNM:608684 isolate B10K-DU-001-33 scaffold910, whole genome shotgun sequence Myiagra hebetior ENA graphic
157
VWZR01017914.1 86.20 full 129,985 130,055 VWZR01017914.1 Oceanodroma tethys voucher USNM:608101 isolate B10K-DU-001-32 scaffold4339, whole genome shotgun sequence Oceanodroma tethys ENA graphic
158
VWZS01004048.1 86.20 full 1,852,135 1,852,065 VWZS01004048.1 Rhabdornis inornatus voucher USNM:607544 isolate B10K-DU-001-29 scaffold1147, whole genome shotgun sequence Rhabdornis inornatus ENA graphic
159
VWZT01006490.1 86.20 full 4,641 4,711 VWZT01006490.1 Pachycephala philippinensis voucher USNM:607512 isolate B10K-DU-001-28 scaffold1360, whole genome shotgun sequence Pachycephala philippinensis ENA graphic
160
VWZV01015104.1 86.20 full 2,187 2,257 VWZV01015104.1 Irena cyanogastra voucher USNM:607434 isolate B10K-DU-001-26 scaffold594, whole genome shotgun sequence Irena cyanogaster ENA graphic
161
VWZW01002478.1 86.20 full 816,719 816,789 VWZW01002478.1 Edolisoma coerulescens voucher USNM:607407 isolate B10K-DU-001-25 scaffold417, whole genome shotgun sequence Edolisoma coerulescens ENA graphic
162
VWZY01003835.1 86.20 full 171,630 171,700 VWZY01003835.1 Chloroceryle aenea voucher USNM:625133 isolate B10K-DU-001-61 scaffold3096, whole genome shotgun sequence Chloroceryle aenea ENA graphic
163
VXAA01002838.1 86.20 full 469,219 469,289 VXAA01002838.1 Anseranas semipalmata voucher USNM:623235 isolate B10K-DU-001-57 scaffold2521, whole genome shotgun sequence Anseranas semipalmata (magpie goose) ENA graphic
164
VXAC01007110.1 86.20 full 799,529 799,459 VXAC01007110.1 Rhipidura dahli voucher USNM:616255 isolate B10K-DU-001-49 scaffold233, whole genome shotgun sequence Rhipidura dahli ENA graphic
165
VXAD01008746.1 86.20 full 809 739 VXAD01008746.1 Dicrurus megarhynchus voucher USNM:616063 isolate B10K-DU-001-48 scaffold1489, whole genome shotgun sequence Dicrurus megarhynchus ENA graphic
166
VXAE01011898.1 86.20 full 1,447 1,377 VXAE01011898.1 Ciconia maguari voucher USNM:614528 isolate B10K-DU-001-47 scaffold6974, whole genome shotgun sequence Ciconia maguari ENA graphic
167
VXAF01001339.1 86.20 full 3,542 3,612 VXAF01001339.1 Spizaetus tyrannus voucher USNM:623090 isolate B10K-DU-007-42 scaffold_1189, whole genome shotgun sequence Spizaetus tyrannus (black hawk-eagle) ENA graphic
168
VXAH01000090.1 86.20 full 628,115 628,185 VXAH01000090.1 Piprites chloris voucher USNM:625579 isolate B10K-DU-007-02 scaffold_48, whole genome shotgun sequence Piprites chloris (white-winged piprites) ENA graphic
169
VXAI01000266.1 86.20 full 504,892 504,962 VXAI01000266.1 Rostratula benghalensis voucher USNM:613014 isolate B10K-DU-006-20 scaffold_255, whole genome shotgun sequence Rostratula benghalensis (greater painted-snipe) ENA graphic
170
VXAJ01000232.1 86.20 full 89,791 89,721 VXAJ01000232.1 Herpetotheres cachinnans voucher USNM:612262 isolate B10K-DU-005-78 scaffold_227, whole genome shotgun sequence Herpetotheres cachinnans ENA graphic
171
VXAK01028483.1 86.20 full 87,095 87,025 VXAK01028483.1 Arenaria interpres voucher USNM:607650 isolate B10K-DU-005-73 scaffold6269, whole genome shotgun sequence Arenaria interpres (ruddy turnstone) ENA graphic
172
VXAL01017803.1 86.20 full 70,281 70,211 VXAL01017803.1 Chauna torquata voucher USNM:614546 isolate B10K-DU-011-36 scaffold918, whole genome shotgun sequence Chauna torquata (southern screamer) ENA graphic
173
VXAM01000489.1 86.20 full 480,470 480,540 VXAM01000489.1 Corythaixoides concolor voucher USNM:642466 isolate B10K-DU-011-20 scaffold_307, whole genome shotgun sequence Corythaixoides concolor (grey go-away-bird) ENA graphic
174
VXAN01000139.1 86.20 full 1,448,945 1,449,015 VXAN01000139.1 Sylvietta virens voucher USNM:642858 isolate B10K-DU-009-59 scaffold_121, whole genome shotgun sequence Sylvietta virens (green crombec) ENA graphic
175
VXAP01000151.1 86.20 full 679,504 679,434 VXAP01000151.1 Glaucidium brasilianum voucher USNM:632722 isolate B10K-DU-008-63 scaffold_126, whole genome shotgun sequence Glaucidium brasilianum (ferruginous pygmy-owl) ENA graphic
176
VXAQ01000599.1 86.20 full 499,754 499,684 VXAQ01000599.1 Chordeiles acutipennis voucher USNM:632837 isolate B10K-DU-008-62 scaffold_525, whole genome shotgun sequence Chordeiles acutipennis (lesser nighthawk) ENA graphic
177
VXAR01008435.1 86.20 full 119,286 119,356 VXAR01008435.1 Amazona guildingii voucher USNM:613763 isolate B10K-DU-001-46 scaffold255, whole genome shotgun sequence Amazona guildingii ENA graphic
178
VXAS01002931.1 86.20 full 31,995 32,065 VXAS01002931.1 Setophaga kirtlandii voucher USNM:613582 isolate B10K-DU-001-45 scaffold61, whole genome shotgun sequence Dendroica kirtlandii (Kirtland's warbler) ENA graphic
179
VXAT01003757.1 86.20 full 56,035 56,105 VXAT01003757.1 Mesembrinibis cayennensis voucher USNM:613351 isolate B10K-DU-001-44 scaffold15028, whole genome shotgun sequence Mesembrinibis cayennensis ENA graphic
180
VXAV01011606.1 86.20 full 64,766 64,696 VXAV01011606.1 Alectura lathami voucher USNM:612658 isolate B10K-DU-001-39 scaffold925, whole genome shotgun sequence Alectura lathami (australian brush-turkey) ENA graphic
181
VXAX01005860.1 86.20 full 1,296,461 1,296,531 VXAX01005860.1 Leptocoma aspasia voucher USNM:608697 isolate B10K-DU-001-35 scaffold408, whole genome shotgun sequence Leptocoma aspasia ENA graphic
182
VXAY01004283.1 86.20 full 138,256 138,326 VXAY01004283.1 Oxyruncus cristatus voucher USNM:632342 isolate B10K-DU-002-07 scaffold25, whole genome shotgun sequence Oxyruncus cristatus (sharpbill) ENA graphic
183
VXAZ01009496.1 86.20 full 995 925 VXAZ01009496.1 Gymnorhina tibicen voucher USNM:632142 isolate B10K-DU-002-05 scaffold412, whole genome shotgun sequence Cracticus tibicen (Australian magpie) ENA graphic
184
VXBA01000164.1 86.20 full 728,027 728,097 VXBA01000164.1 Serilophus lunatus voucher USNM:631797 isolate B10K-DU-002-03 scaffold452, whole genome shotgun sequence Serilophus lunatus (silver-breasted broadbill) ENA graphic
185
VXBB01009065.1 86.20 full 957 887 VXBB01009065.1 Illadopsis cleaveri voucher USNM:631543 isolate B10K-DU-002-01 scaffold27359, whole genome shotgun sequence Illadopsis cleaveri (blackcap illadopsis) ENA graphic
186
VXBC01010658.1 86.20 full 807,750 807,680 VXBC01010658.1 Ploceus nigricollis voucher USNM:630899 isolate B10K-DU-001-79 scaffold158, whole genome shotgun sequence Ploceus nigricollis ENA graphic
187
VXBC01010658.1 86.20 full 808,026 807,956 VXBC01010658.1 Ploceus nigricollis voucher USNM:630899 isolate B10K-DU-001-79 scaffold158, whole genome shotgun sequence Ploceus nigricollis ENA graphic
188
VXBE01005278.1 86.20 full 258,473 258,403 VXBE01005278.1 Motacilla alba voucher USNM:627656 isolate B10K-DU-001-75 scaffold996, whole genome shotgun sequence Motacilla alba ENA graphic
189
VXBF01002308.1 86.20 full 218,114 218,184 VXBF01002308.1 Oenanthe oenanthe voucher USNM:627655 isolate B10K-DU-001-74 scaffold2108, whole genome shotgun sequence Oenanthe oenanthe (Northern wheatear) ENA graphic
190
VXBG01006878.1 86.20 full 1,437,532 1,437,602 VXBG01006878.1 Sylvia borin voucher USNM:637419 isolate B10K-DU-002-19 scaffold93, whole genome shotgun sequence Sylvia borin ENA graphic
191
VXBH01001909.1 86.20 full 371,785 371,855 VXBH01001909.1 Rynchops niger voucher USNM:637251 isolate B10K-DU-002-16 scaffold1570, whole genome shotgun sequence Rynchops niger (black skimmer) ENA graphic
192
VXBI01008338.1 86.20 full 595,219 595,289 VXBI01008338.1 Toxostoma redivivum voucher USNM:636895 isolate B10K-DU-002-15 scaffold630, whole genome shotgun sequence Toxostoma redivivum ENA graphic
193
VXBJ01003089.1 86.20 full 1,534,564 1,534,634 VXBJ01003089.1 Nycticryphes semicollaris voucher USNM:635776 isolate B10K-DU-002-14 scaffold63, whole genome shotgun sequence Nycticryphes semicollaris ENA graphic
194
VXBK01002079.1 86.20 full 1,026,481 1,026,411 VXBK01002079.1 Himantopus himantopus voucher USNM:635762 isolate B10K-DU-002-13 scaffold1079, whole genome shotgun sequence Himantopus himantopus (black-winged stilt) ENA graphic
195
VXBN01014233.1 86.20 full 669,509 669,439 VXBN01014233.1 Sinosuthora webbiana voucher USNM:633249 isolate B10K-DU-002-08 scaffold1996, whole genome shotgun sequence Paradoxornis webbianus ENA graphic
196
VXBO01001764.1 86.20 full 89,322 89,252 VXBO01001764.1 Rhinoptilus africanus voucher USNM:642451 isolate B10K-DU-002-36 scaffold132, whole genome shotgun sequence Rhinoptilus africanus (double-banded courser) ENA graphic
197
VXBP01010623.1 86.20 full 445,615 445,685 VXBP01010623.1 Rhinopomastus cyanomelas voucher USNM:642342 isolate B10K-DU-002-35 scaffold150, whole genome shotgun sequence Rhinopomastus cyanomelas (common scimitar-bill) ENA graphic
198
VXBQ01012438.1 86.20 full 76,276 76,206 VXBQ01012438.1 Phainopepla nitens voucher USNM:642003 isolate B10K-DU-002-32 scaffold1707, whole genome shotgun sequence Phainopepla nitens ENA graphic
199
VXBR01012265.1 86.20 full 644,759 644,689 VXBR01012265.1 Cisticola juncidis voucher USNM:641819 isolate B10K-DU-002-30 scaffold1996, whole genome shotgun sequence Cisticola juncidis ENA graphic
200
VXBT01006877.1 86.20 full 640,733 640,663 VXBT01006877.1 Oriolus oriolus voucher USNM:639700 isolate B10K-DU-002-24 scaffold744, whole genome shotgun sequence Oriolus oriolus ENA graphic
201
VXBU01015306.1 86.20 full 653,617 653,547 VXBU01015306.1 Bombycilla garrulus voucher USNM:638986 isolate B10K-DU-002-23 scaffold158, whole genome shotgun sequence Bombycilla garrulus ENA graphic
202
VXBV01007364.1 86.20 full 1,454,074 1,454,144 VXBV01007364.1 Certhia brachydactyla voucher USNM:637436 isolate B10K-DU-002-20 scaffold322, whole genome shotgun sequence Certhia brachydactyla ENA graphic
203
VXBW01004775.1 86.20 full 80,985 80,915 VXBW01004775.1 Thinocorus orbignyianus voucher USNM:645613 isolate B10K-DU-002-47 scaffold2996, whole genome shotgun sequence Thinocorus orbignyianus ENA graphic
204
VXBX01008488.1 86.20 full 269,751 269,821 VXBX01008488.1 Scytalopus superciliaris voucher USNM:645480 isolate B10K-DU-002-46 scaffold2824, whole genome shotgun sequence Scytalopus superciliaris ENA graphic
205
VXBY01000995.1 86.20 full 33,746 33,676 VXBY01000995.1 Leiothrix lutea voucher USNM:643454 isolate B10K-DU-002-43 scaffold_987, whole genome shotgun sequence Leiothrix lutea (red-billed leiothrix) ENA graphic
206
VXBZ01001508.1 86.20 full 58,285 58,215 VXBZ01001508.1 Heliornis fulica voucher USNM:623068 isolate B10K-DU-001-55 scaffold4580, whole genome shotgun sequence Heliornis fulica (sungrebe) ENA graphic
207
VYXB01008607.1 86.20 full 136,344 136,414 VYXB01008607.1 Pachyramphus minor voucher USNM:627125 isolate B10K-DU-001-72 scaffold1138, whole genome shotgun sequence Pachyramphus minor ENA graphic
208
VYXC01001372.1 86.20 full 2,657,528 2,657,458 VYXC01001372.1 Platysteira castanea voucher USNM:627032 isolate B10K-DU-001-71 scaffold923, whole genome shotgun sequence Platysteira castanea ENA graphic
209
VYXD01005462.1 86.20 full 307,655 307,725 VYXD01005462.1 Hylia prasina voucher USNM:627009 isolate B10K-DU-001-70 scaffold681, whole genome shotgun sequence Hylia prasina (green hylia) ENA graphic
210
VYXE01004683.1 86.20 full 493 423 VYXE01004683.1 Cardinalis cardinalis voucher USNM:626494 isolate B10K-DU-001-69 scaffold3592, whole genome shotgun sequence Cardinalis cardinalis ENA graphic
211
VYXE01011812.1 86.20 full 625 555 VYXE01011812.1 Cardinalis cardinalis voucher USNM:626494 isolate B10K-DU-001-69 scaffold11986, whole genome shotgun sequence Cardinalis cardinalis ENA graphic
212
VYXF01000842.1 86.20 full 3,487 3,557 VYXF01000842.1 Polioptila caerulea voucher USNM:626438 isolate B10K-DU-001-66 scaffold1066, whole genome shotgun sequence Polioptila caerulea ENA graphic
213
VYXG01001570.1 86.20 full 645,457 645,527 VYXG01001570.1 Lanius ludovicianus voucher USNM:626352 isolate B10K-DU-001-65 scaffold1905, whole genome shotgun sequence Lanius ludovicianus ENA graphic
214
VYXH01006281.1 86.20 full 115,385 115,455 VYXH01006281.1 Burhinus bistriatus voucher USNM:626233 isolate B10K-DU-001-64 scaffold215, whole genome shotgun sequence Burhinus bistriatus ENA graphic
215
VYZC01000579.1 86.20 full 278,317 278,387 VYZC01000579.1 Mionectes macconnelli voucher USNM:639118 isolate B10K-DU-003-16 scaffold_573, whole genome shotgun sequence Mionectes macconnelli (McConnell's flycatcher) ENA graphic
216
VYZD01000349.1 86.20 full 259,267 259,337 VYZD01000349.1 Furnarius figulus voucher USNM:562254 isolate B10K-DU-003-06 scaffold_282, whole genome shotgun sequence Furnarius figulus ENA graphic
217
VYZE01000218.1 86.20 full 284,353 284,423 VYZE01000218.1 Pterocles burchelli voucher USNM:642190 isolate B10K-DU-027-49 scaffold_217, whole genome shotgun sequence Pterocles burchelli ENA graphic
218
VYZH01000857.1 86.20 full 101,842 101,912 VYZH01000857.1 Probosciger aterrimus voucher USNM:615002 isolate B10K-DU-017-47 scaffold_841, whole genome shotgun sequence Probosciger aterrimus ENA graphic
219
VYZI01000308.1 86.20 full 652,118 652,048 VYZI01000308.1 Centropus unirufus voucher USNM:607318 isolate B10K-DU-017-25 scaffold_304, whole genome shotgun sequence Centropus unirufus ENA graphic
220
VYZL01003599.1 86.20 full 1,566,063 1,565,993 VYZL01003599.1 Bucorvus abyssinicus isolate B10K-DU-012-80 scaffold350, whole genome shotgun sequence Bucorvus abyssinicus ENA graphic
221
VYZM01009483.1 86.20 full 29,476 29,406 VYZM01009483.1 Dromas ardeola voucher USNM:647762 isolate B10K-DU-012-55 scaffold4885, whole genome shotgun sequence Dromas ardeola ENA graphic
222
VYZP01052489.1 86.20 full 1,107 1,037 VYZP01052489.1 Hypocryptadius cinnamomeus voucher FMNH:AVES:357649 isolate B10K-DU-002-83 scaffold3908, whole genome shotgun sequence Hypocryptadius cinnamomeus ENA graphic
223
VYZQ01044907.1 86.20 full 76,031 75,961 VYZQ01044907.1 Mystacornis crossleyi voucher FMNH:AVES:345860 isolate B10K-DU-002-82 scaffold2883, whole genome shotgun sequence Mystacornis crossleyi ENA graphic
224
VYZR01051810.1 86.20 full 3,044 3,114 VYZR01051810.1 Oxylabes madagascariensis voucher FMNH:AVES:352915 isolate B10K-DU-002-81 scaffold10492, whole genome shotgun sequence Oxylabes madagascariensis ENA graphic
225
VYZS01005403.1 86.20 full 56,991 56,921 VYZS01005403.1 Neodrepanis coruscans voucher FMNH:AVES:345711 isolate B10K-DU-002-79 scaffold1063, whole genome shotgun sequence Neodrepanis coruscans (wattled asity) ENA graphic
226
VYZT01034624.1 86.20 full 65,030 65,100 VYZT01034624.1 Pomatostomus ruficeps voucher LSUMZ:Ornithology:B23408 isolate B10K-DU-002-71 scaffold11041, whole genome shotgun sequence Pomatostomus ruficeps (chestnut-crowned babbler) ENA graphic
227
VYZV01043719.1 86.20 full 88,651 88,581 VYZV01043719.1 Pandion haliaetus voucher CAS:90221 isolate B10K-DU-012-58 scaffold3655, whole genome shotgun sequence Pandion haliaetus ENA graphic
228
VYZX01032133.1 86.20 full 148,359 148,429 VYZX01032133.1 Brachypteracias leptosomus voucher FMNH:AVES:345686 isolate B10K-DU-012-52 scaffold2735, whole genome shotgun sequence Brachypteracias leptosomus (short-legged ground-roller) ENA graphic
229
VZRD01000171.1 86.20 full 1,465,684 1,465,754 VZRD01000171.1 Tachuris rubrigastra voucher LSUMZ:Ornithology:B48222 isolate B10K-CU-031-13 scaffold_167, whole genome shotgun sequence Tachuris rubrigastra ENA graphic
230
VZRE01011463.1 86.20 full 83,071 83,001 VZRE01011463.1 Cephalopterus ornatus voucher USNM:541336 isolate B10K-DU-001-01 scaffold6479, whole genome shotgun sequence Cephalopterus ornatus (amazonian umbrellabird) ENA graphic
231
VZRG01000391.1 86.20 full 86,994 86,924 VZRG01000391.1 Erythrocercus mccallii voucher LSUMZ:Ornithology:B45295 isolate B10K-DU-002-60 scaffold_388, whole genome shotgun sequence Erythrocercus mccallii ENA graphic
232
VZRH01005110.1 86.20 full 729,086 729,016 VZRH01005110.1 Urocynchramus pylzowi voucher IZCAS:653 isolate B10K-DU-012-38 scaffold236, whole genome shotgun sequence Urocynchramus pylzowi ENA graphic
233
VZRI01010188.1 86.20 full 52,234 52,164 VZRI01010188.1 Upupa epops voucher IZCAS:18810 isolate B10K-DU-012-37 scaffold5356, whole genome shotgun sequence Upupa epops (Eurasian hoopoe) ENA graphic
234
VZRJ01002433.1 86.20 full 79,766 79,696 VZRJ01002433.1 Ptilonorhynchus violaceus voucher UMD:RWG isolate B10K-DU-012-10 scaffold686, whole genome shotgun sequence Ptilonorhynchus violaceus (satin bowerbird) ENA graphic
235
VZRL01003361.1 86.20 full 432,288 432,218 VZRL01003361.1 Origma solitaria voucher MVMA:3525 isolate B10K-DU-029-52 scaffold1160, whole genome shotgun sequence Origma solitaria ENA graphic
236
VZRM01003194.1 86.20 full 947,772 947,702 VZRM01003194.1 Grantiella picta voucher MVMA:2672 isolate B10K-DU-029-50 scaffold702, whole genome shotgun sequence Grantiella picta ENA graphic
237
VZRO01007465.1 86.20 full 59,541 59,471 VZRO01007465.1 Daphoenositta chrysoptera voucher MVMA:1309 isolate B10K-DU-029-47 scaffold582, whole genome shotgun sequence Daphoenositta chrysoptera (varied sittella) ENA graphic
238
VZRP01019397.1 86.20 full 10,884 10,814 VZRP01019397.1 Malurus elegans voucher MVMA:0215 isolate B10K-DU-029-44 scaffold1400, whole genome shotgun sequence Malurus elegans (Red-winged fairywren) ENA graphic
239
VZRQ01005055.1 86.20 full 1,086,461 1,086,531 VZRQ01005055.1 Machaerirhynchus nigripectus isolate B10K-DU-029-43 scaffold719, whole genome shotgun sequence Machaerirhynchus nigripectus ENA graphic
240
VZRR01004497.1 86.20 full 1,466,708 1,466,778 VZRR01004497.1 Oreocharis arfaki isolate B10K-DU-029-42 scaffold113, whole genome shotgun sequence Oreocharis arfaki ENA graphic
241
VZRS01012767.1 86.20 full 78,936 78,866 VZRS01012767.1 Ifrita kowaldi isolate B10K-DU-029-41 scaffold773, whole genome shotgun sequence Ifrita kowaldi (blue-capped ifrita) ENA graphic
242
VZRU01001350.1 86.20 full 1,829 1,899 VZRU01001350.1 Pedionomus torquatus voucher MVMA:2319 isolate B10K-DU-029-80 scaffold6560, whole genome shotgun sequence Pedionomus torquatus (plains-wanderer) ENA graphic
243
VZRV01001536.1 86.20 full 356,101 356,031 VZRV01001536.1 Falcunculus frontatus voucher MVMA:020 isolate B10K-DU-029-77 scaffold191, whole genome shotgun sequence Falcunculus frontatus (crested shrike-tit) ENA graphic
244
VZRX01023645.1 86.20 full 1,536 1,606 VZRX01023645.1 Notiomystis cincta isolate B10K-DU-029-75 scaffold13837, whole genome shotgun sequence Notiomystis cincta ENA graphic
245
VZRY01001942.1 86.20 full 730,400 730,470 VZRY01001942.1 Rhynochetos jubatus isolate B10K-DU-029-58 scaffold52, whole genome shotgun sequence Rhynochetos jubatus (kagu) ENA graphic
246
VZRZ01000057.1 86.20 full 152,438 152,368 VZRZ01000057.1 Climacteris rufus voucher MVMA:354 isolate B10K-DU-029-53 scaffold514, whole genome shotgun sequence Climacteris rufa (rufous treecreeper) ENA graphic
247
VZSA02001849.1 86.20 full 3,439 3,509 VZSA02001849.1 Melospiza melodia voucher UBC:243185379 isolate OUT-0008 Contig1848_pilon, whole genome shotgun sequence Melospiza melodia (song sparrow) ENA graphic
248
VZSB01001739.1 86.20 full 35,759,413 35,759,343 VZSB01001739.1 Caloenas nicobarica isolate OUT-0007 ScfYJcd_5, whole genome shotgun sequence Caloenas nicobarica ENA graphic
249
VZSC01007510.1 86.20 full 186,825 186,755 VZSC01007510.1 Steatornis caripensis voucher MPEG:T17221 isolate OUT-0004 scaffold412, whole genome shotgun sequence Steatornis caripensis (oilbird) ENA graphic
250
VZSD01004189.1 86.20 full 4,082 4,152 VZSD01004189.1 Alca torda voucher C:Vinge78 isolate OUT-0003 scaffold673, whole genome shotgun sequence Alca torda ENA graphic
251
VZSE01007093.1 86.20 full 830 760 VZSE01007093.1 Promerops cafer isolate B10K-UC-030-53 scaffold4435, whole genome shotgun sequence Promerops cafer (Cape sugarbird) ENA graphic
252
VZSF01000138.1 86.20 full 668,493 668,563 VZSF01000138.1 Chionis minor isolate B10K-UC-030-51 scaffold912, whole genome shotgun sequence Chionis minor (black-faced sheathbill) ENA graphic
253
VZSI01000011.1 86.20 full 4,889,856 4,889,926 VZSI01000011.1 Aphelocoma coerulescens voucher CUMV:Bird:1713-13619 isolate OUT-0022 scaffold_7, whole genome shotgun sequence Aphelocoma coerulescens (scrub jay) ENA graphic
254
VZSJ01000944.1 86.20 full 466,101 466,171 VZSJ01000944.1 Pheucticus melanocephalus isolate OUT-0018 scaffold5891, whole genome shotgun sequence Pheucticus melanocephalus ENA graphic
255
VZSM01004914.1 86.20 full 1,543,750 1,543,680 VZSM01004914.1 Loxia curvirostra voucher UWYMV:Bird:2860 isolate OUT-0011 scaffold218, whole genome shotgun sequence Loxia curvirostra ENA graphic
256
VZSO01000045.1 86.20 full 6,546,454 6,546,524 VZSO01000045.1 Asarcornis scutulata voucher ECUH:510 isolate OUT-0051 scaffold464, whole genome shotgun sequence Asarcornis scutulata ENA graphic
257
VZSR01001685.1 86.20 full 21,904,522 21,904,592 VZSR01001685.1 Brachypodius atriceps voucher LSUMZ:Ornithology:B50336 isolate OUT-0037 Sct0y12_1685, whole genome shotgun sequence Pycnonotus atriceps ENA graphic
258
VZSS01000001.1 86.20 full 29,992,960 29,992,890 VZSS01000001.1 Poecile atricapillus voucher CUMV:Bird:55912 isolate OUT-0023 scaffold_0_1, whole genome shotgun sequence Poecile atricapilla (Black-capped chickadee) ENA graphic
259
VZST01000315.1 86.20 full 333,362 333,432 VZST01000315.1 Acrocephalus arundinaceus voucher personal:Bengt Hansson:3553254(H9-23) isolate OUT-0054 scaffold_321, whole genome shotgun sequence Acrocephalus arundinaceus (great reed warbler) ENA graphic
260
VZSU01000322.1 86.20 full 2,137,812 2,137,742 VZSU01000322.1 Nesospiza acunhae isolate OUT-0053 scaffold241, whole genome shotgun sequence Nesospiza acunhae ENA graphic
261
VZSW01000074.1 86.20 full 34,192 34,122 VZSW01000074.1 Pomatorhinus ruficollis voucher IZCAS:20397 isolate B10K-IZ-033-81 scaffold_72, whole genome shotgun sequence Pomatorhinus ruficollis ENA graphic
262
VZSY01000914.1 86.20 full 187,250 187,180 VZSY01000914.1 Sapayoa aenigma voucher LSUMZ:Ornithology:B2333 isolate B10K-DU-030-41 scaffold_851, whole genome shotgun sequence Sapayoa aenigma (broad-billed sapayoa) ENA graphic
263
VZSZ01012247.1 86.20 full 1,277 1,207 VZSZ01012247.1 Ibidorhyncha struthersii voucher IZCAS:2150 isolate B10K-DU-030-25 scaffold7662, whole genome shotgun sequence Ibidorhyncha struthersii ENA graphic
264
VZTA01024605.1 86.20 full 191,841 191,771 VZTA01024605.1 Mohoua ochrocephala voucher OTA:MR-006 isolate B10K-DU-030-22 scaffold2072, whole genome shotgun sequence Mohoua ochrocephala ENA graphic
265
VZTB01000167.1 86.20 full 824,898 824,968 VZTB01000167.1 Thryothorus ludovicianus voucher USNM:626484 isolate B10K-DU-001-68 scaffold567, whole genome shotgun sequence Thryothorus ludovicianus ENA graphic
266
VZTC01003251.1 86.20 full 2,074 2,144 VZTC01003251.1 Leucopsar rothschildi voucher USNM:631788 isolate B10K-DU-002-02 scaffold1547, whole genome shotgun sequence Leucopsar rothschildi ENA graphic
267
VZTD01003429.1 86.20 full 2,340 2,410 VZTD01003429.1 Rhagologus leucostigma isolate B10K-DU-029-40 scaffold1177, whole genome shotgun sequence Rhagologus leucostigma ENA graphic
268
VZTE01005058.1 86.20 full 386,247 386,177 VZTE01005058.1 Eulacestoma nigropectus isolate B10K-DU-029-39 scaffold1460, whole genome shotgun sequence Eulacestoma nigropectus (wattled ploughbill) ENA graphic
269
VZTF01007007.1 86.20 full 663,820 663,890 VZTF01007007.1 Cnemophilus loriae isolate B10K-DU-029-38 scaffold581, whole genome shotgun sequence Cnemophilus loriae (Loria's bird-of-paradise) ENA graphic
270
VZTH01018409.1 86.20 full 141,814 141,884 VZTH01018409.1 Aleadryas rufinucha isolate B10K-DU-029-36 scaffold565, whole genome shotgun sequence Aleadryas rufinucha (rufous-naped whistler) ENA graphic
271
VZTI01000605.1 86.20 full 79,627 79,557 VZTI01000605.1 Struthidea cinerea isolate B10K-DU-029-33 scaffold150, whole genome shotgun sequence Struthidea cinerea ENA graphic
272
VZTJ01003881.1 86.20 full 643,477 643,407 VZTJ01003881.1 Orthonyx spaldingii isolate B10K-DU-029-32 scaffold919, whole genome shotgun sequence Orthonyx spaldingii (northern chowchilla) ENA graphic
273
VZTK01005861.1 86.20 full 244,263 244,333 VZTK01005861.1 Podargus strigoides voucher USNM:612703 isolate B10K-DU-001-40 scaffold1311, whole genome shotgun sequence Podargus strigoides (tawny frogmouth) ENA graphic
274
VZTM01022104.1 86.20 full 88,189 88,119 VZTM01022104.1 Jacana jacana voucher LSUMZ:Ornithology:B51411 isolate B10K-DU-002-59 scaffold9294, whole genome shotgun sequence Jacana jacana (wattled jacana) ENA graphic
275
VZTO01018446.1 86.20 full 35,215 35,145 VZTO01018446.1 Syrrhaptes paradoxus voucher USNM:586725 isolate B10K-DU-003-42 scaffold3122, whole genome shotgun sequence Syrrhaptes paradoxus (Pallas's sandgrouse) ENA graphic
276
VZTP01028859.1 86.20 full 2,601 2,671 VZTP01028859.1 Prunella fulvescens voucher UWBM:57993 isolate B10K-DU-012-46 scaffold14382, whole genome shotgun sequence Prunella fulvescens ENA graphic
277
VZTQ01003771.1 86.20 full 90,166 90,236 VZTQ01003771.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold1307, whole genome shotgun sequence Pelecanoides urinatrix ENA graphic
278
VZTT01069644.1 86.20 full 31,417 31,347 VZTT01069644.1 Buphagus erythrorhynchus voucher KANU:26688 isolate B10K-DU-012-02 scaffold3850, whole genome shotgun sequence Buphagus erythrorhynchus (red-billed oxpecker) ENA graphic
279
VZTV01068643.1 86.20 full 1,912 1,982 VZTV01068643.1 Anhinga rufa voucher USNM:642540 isolate B10K-DU-029-28 scaffold26925, whole genome shotgun sequence Anhinga rufa (African darter) ENA graphic
280
VZTW01006307.1 86.20 full 37,108 37,038 VZTW01006307.1 Thalassarche chlororhynchos voucher USNM:635731 isolate B10K-DU-029-24 scaffold2192, whole genome shotgun sequence Thalassarche chlororhynchos ENA graphic
281
VZTX01020681.1 86.20 full 77,232 77,162 VZTX01020681.1 Pardalotus punctatus voucher MVMA:289 isolate B10K-DU-029-51 scaffold211, whole genome shotgun sequence Pardalotus punctatus (spotted pardalote) ENA graphic
282
VZTZ01012523.1 86.20 full 1,430,426 1,430,496 VZTZ01012523.1 Drymodes brunneopygia voucher MVMA:2664_1 isolate B10K-DU-030-03 scaffold898, whole genome shotgun sequence Drymodes brunneopygia ENA graphic
283
VZUA01080346.1 86.20 full 217 287 VZUA01080346.1 Horornis vulcanius voucher LSUMZ:Ornithology:B52647 isolate B10K-DU-029-69 scaffold19384, whole genome shotgun sequence Horornis vulcanius ENA graphic
284
VZUB01002871.1 86.20 full 142,280 142,350 VZUB01002871.1 Oreotrochilus melanogaster voucher MSB:Bird:31543 isolate OUT-0002 sisbioavesBR.scaffold5462, whole genome shotgun sequence Oreotrochilus melanogaster ENA graphic
285
VZUC01000016.1 86.20 full 663,590 663,520 VZUC01000016.1 Rissa tridactyla isolate OUT-0021 scaffold33_cov42, whole genome shotgun sequence Rissa tridactyla (black-legged kittiwake) ENA graphic
286
VZUD01000265.1 86.20 full 3,101,336 3,101,406 VZUD01000265.1 Cepphus grylle isolate OUT-0020 scaffold1904_cov51, whole genome shotgun sequence Cepphus grylle ENA graphic
287
VZUF01040823.1 86.20 full 601 531 VZUF01040823.1 Molothrus ater voucher MSB:Bird:39518 isolate OUT-0049 scf7180003501603, whole genome shotgun sequence Molothrus ater ENA graphic
288
VZUF01142780.1 86.20 full 1,383,203 1,383,133 VZUF01142780.1 Molothrus ater voucher MSB:Bird:39518 isolate OUT-0049 scf7180003603682, whole genome shotgun sequence Molothrus ater ENA graphic
289
VZUG01002199.1 86.20 full 41,086 41,016 VZUG01002199.1 Calonectris borealis voucher personal:Jacob:6119913 isolate OUT-0025 scaffold4383, whole genome shotgun sequence Calonectris borealis (cory's shearwater) ENA graphic
290
VZUH01004879.1 86.20 full 97,761 97,831 VZUH01004879.1 Xiphorhynchus elegans voucher MPEG:75162 isolate OUT-0059 scaffold_6538, whole genome shotgun sequence Xiphorhynchus elegans (elegant woodcreeper) ENA graphic
291
VZZT01001494.1 86.20 full 86,173 86,103 VZZT01001494.1 Fregetta grallaria voucher USNM:615151 isolate B10K-DU-006-09 scaffold_1473, whole genome shotgun sequence Fregetta grallaria ENA graphic
292
VZZU01000870.1 86.20 full 232,867 232,797 VZZU01000870.1 Nyctiprogne leucopyga voucher USNM:572514 isolate B10K-DU-005-01 scaffold_852, whole genome shotgun sequence Nyctiprogne leucopyga ENA graphic
293
VZZV01000399.1 86.20 full 236,744 236,674 VZZV01000399.1 Circaetus pectoralis voucher USNM:642474 isolate B10K-DU-010-60 scaffold_374, whole genome shotgun sequence Circaetus pectoralis ENA graphic
294
VZZX01007313.1 86.20 full 364,222 364,292 VZZX01007313.1 Hirundo rustica voucher USNM:626475 isolate B10K-DU-001-67 scaffold207, whole genome shotgun sequence Hirundo rustica (Barn swallow) ENA graphic
295
VZZY01024434.1 86.20 full 60,943 60,873 VZZY01024434.1 Eurystomus gularis voucher LSUMZ:Ornithology:B39360 isolate B10K-DU-002-51 scaffold1565, whole genome shotgun sequence Eurystomus gularis ENA graphic
296
WAAC01000439.1 86.20 full 51,977 51,907 WAAC01000439.1 Larus smithsonianus voucher USNM:641377 isolate B10K-DU-002-28 scaffold513, whole genome shotgun sequence Larus smithsonianus ENA graphic
297
WAAD01006541.1 86.20 full 103,736 103,806 WAAD01006541.1 Fregata magnificens voucher LSUMZ:Ornithology:B24538 isolate B10K-DU-002-48 scaffold386, whole genome shotgun sequence Fregata magnificens ENA graphic
298
WAAD01006541.1 86.20 full 105,901 105,971 WAAD01006541.1 Fregata magnificens voucher LSUMZ:Ornithology:B24538 isolate B10K-DU-002-48 scaffold386, whole genome shotgun sequence Fregata magnificens ENA graphic
299
WAAE01020026.1 86.20 full 32,326 32,396 WAAE01020026.1 Nicator chloris voucher USNM:642941 isolate B10K-DU-002-40 scaffold487, whole genome shotgun sequence Nicator chloris ENA graphic
300
WAAF01007717.1 86.20 full 73,738 73,808 WAAF01007717.1 Tricholaema leucomelas voucher USNM:642560 isolate B10K-DU-002-37 scaffold2143, whole genome shotgun sequence Tricholaema leucomelas (pied barbet) ENA graphic

Note: this table contains only the first 300 sequences.

Alignment

There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...

View options

You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.

Viewer:

Formatting options

You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".

Alignment format:
Download/view:

Download

Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.

Submit a new alignment

We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.

Secondary structure

This section shows a variety of different secondary structure representations for this family. More...

You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.

Current Rfam structure

5 out of 23 basepairs are significant at E-value=0.05

Y Y G Y R U U C A C G Y G R C Y U U R U U U A A G G C A C G C G G U G A A U G C C A A R 5'

R-scape optimised structure

5 out of 30 basepairs are significant at E-value=0.05

Y Y G Y R U U C A C G Y G R C Y U U R U U U A A G G C A C G C G G U G A A U G C C A A R 5'
  • Colours
  •  Statistically significant basepair with covariation
  •  97% conserved nucleotide
  •  90% conserved nucleotide
  •  75% conserved nucleotide
  •  50% conserved nucleotide
  • Nucleotides
  • R: A or G
  • Y: C or U

Tip: The diagrams are interactive:
you can pan and zoom to see more details
or hover over nucleotides and basepairs.

R-scape is a method for testing whether covariation analysis supports the presence of a conserved RNA secondary structure. This page shows R-scape analysis of the secondary structure from the Rfam seed alignment and a new structure with covariation support that is compatible with the same alignment.

To find out more about the method, see the R-scape paper by Rivas et al., 2016. The structures are visualised using R2R.

Species distribution

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Lineage

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Colour assignments

Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

Selections

Click on a node to select that node and its sub-tree.

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This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...

Tree controls

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The tree shows the occurrence of this RNA across different species. More...

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Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.

Trees

This page displays the predicted phylogenetic tree for the alignment. More...

This tree was built using the fasttree method.

Label the trees using or

Note: You can also download the data file for the seed tree.

Motif matches

There are 1 motifs which match this family.

This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...

Original order Motif Accession Motif Description Number of Hits Fraction of Hits Sum of Bits Image
7 RM00008 GNRA tetraloop 4 0.071 34.3 Match Image

References

This section shows the database cross-references that we have for this Rfam family.

Literature references

  1. Lai EC, Tomancak P, Williams RW, Rubin GM Genome Biol 2003;4:R42. Computational identification of Drosophila microRNA genes. PUBMED:12844358

  2. Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP; Genes Dev. 2003;17:991-1008. The microRNAs of Caenorhabditis elegans. PUBMED:12672692

  3. Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol 2002;12:735-739. Identification of tissue-specific microRNAs from mouse. PUBMED:12007417

  4. Kozomara A, Birgaoanu M, Griffiths-Jones S Nucleic Acids Res. 2019;47:D155. miRBase: from microRNA sequences to function. PUBMED:30423142

External database links

Curation and family details

This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.

Curation

Seed source Griffiths-Jones SR
Structure source Predicted; PFOLD
Type Gene; miRNA;
Author Griffiths-Jones SRORCID logo
Alignment details
Alignment Number of
sequences
full 2,215
seed 122

Model information

Build commands
cmbuild -F CM SEED
cmcalibrate --mpi CM
Search command
cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
Gathering cutoff 49.0
Trusted cutoff 49.0
Noise cutoff 48.7
Covariance model Download
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