Summary
Wikipedia annotation Edit Wikipedia article
The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry mir-124 microRNA precursor family. More...
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Sequences
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Table preview (300 out of 2,337 sequence regions)
Original order | Download FASTA | Accession | Bit score | Type | Start | End | Description | Species | View context |
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0 | URS000075A274_10090 | N/A | seed | 1 | 68 | Mus musculus (house mouse) microRNA mmu-mir-124 precursor (mmu-mir-124-3) | Mus musculus (house mouse) | ||
1 | URS000075CB11_59729 | N/A | seed | 56 | 127 | Taeniopygia guttata (zebra finch) microRNA tgu-mir-124 precursor (tgu-mir-124-3) | Taeniopygia guttata | ||
2 | URS000075EDDE_9606 | N/A | seed | 8 | 79 | Homo sapiens (human) microRNA hsa-mir-124 precursor (hsa-mir-124-3) | Homo sapiens (human) | ||
3 | URS0000710B7D_29078 | N/A | seed | 5 | 76 | Eptesicus fuscus (big brown bat) microRNA efu-mir-124 precursor (efu-mir-124-3) | Eptesicus fuscus (big brown bat) | ||
4 | URS000075EDDE_10116 | N/A | seed | 8 | 79 | Rattus norvegicus (Norway rat) microRNA rno-mir-124 precursor (rno-mir-124-3) | Rattus norvegicus (Norway rat) | ||
5 | URS000075EDDE_9913 | N/A | seed | 8 | 79 | Bos taurus (cattle) microRNA bta-mir-124b precursor | Bos taurus (cattle) | ||
6 | URS000075EDDE_9600 | N/A | seed | 8 | 79 | Pongo pygmaeus (Bornean orangutan) microRNA ppy-mir-124 precursor (ppy-mir-124-2) | Pongo pygmaeus (Bornean orangutan) | ||
7 | URS000075B1A2_9031 | N/A | seed | 9 | 80 | Gallus gallus (chicken) microRNA gga-mir-124a precursor (gga-mir-124a-2) | Gallus gallus (chicken) | ||
8 | URS0000A97F5B_8255 | N/A | seed | 1 | 60 | Paralichthys olivaceus (Japanese flounder) microRNA pol-mir-124 precursor | Paralichthys olivaceus (Japanese flounder) | ||
9 | URS00007E40F7_28377 | N/A | seed | 14 | 85 | Anolis carolinensis (green anole) microRNA aca-mir-124a precursor (aca-mir-124a-2) | Anolis carolinensis (green anole) | ||
10 | URS0000D4FBEE_8665 | N/A | seed | 3 | 74 | Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-2) | Ophiophagus hannah (king cobra) | ||
11 | URS00007E34E8_9615 | N/A | seed | 1 | 58 | Canis lupus familiaris (dog) microRNA cfa-mir-124 precursor (cfa-mir-124-3) | Canis lupus familiaris (dog) | ||
12 | URS000075E737_7955 | N/A | seed | 21 | 92 | Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-6) | Danio rerio (zebrafish) | ||
13 | URS0000D50E65_7998 | N/A | seed | 1 | 58 | Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-5) | Ictalurus punctatus (channel catfish) | ||
14 | URS000075A6DC_31033 | N/A | seed | 6 | 78 | Takifugu rubripes (torafugu) microRNA fru-mir-124 precursor (fru-mir-124-2) | Takifugu rubripes | ||
15 | URS0000A8C755_99883 | N/A | seed | 3 | 75 | Tetraodon nigroviridis (spotted green pufferfish) microRNA tni-mir-124 precursor (tni-mir-124-2) | Tetraodon nigroviridis | ||
16 | URS000075A939_9606 | N/A | seed | 7 | 79 | Homo sapiens (human) microRNA hsa-mir-124 precursor (hsa-mir-124-1) | Homo sapiens (human) | ||
17 | URS0000D546C5_29078 | N/A | seed | 4 | 76 | Eptesicus fuscus (big brown bat) microRNA efu-mir-124 precursor (efu-mir-124-1) | Eptesicus fuscus (big brown bat) | ||
18 | URS000075A939_10090 | N/A | seed | 7 | 79 | Mus musculus (house mouse) microRNA mmu-mir-124 precursor (mmu-mir-124-1) | Mus musculus (house mouse) | ||
19 | URS000075A939_10116 | N/A | seed | 7 | 79 | Rattus norvegicus (Norway rat) microRNA rno-mir-124 precursor (rno-mir-124-1) | Rattus norvegicus (Norway rat) | ||
20 | URS000075A939_9823 | N/A | seed | 7 | 79 | Sus scrofa (pig) microRNA ssc-mir-124a precursor (ssc-mir-124a-2) | Sus scrofa (pig) | ||
21 | URS000075A939_9913 | N/A | seed | 7 | 79 | Bos taurus (cattle) microRNA bta-mir-124a precursor (bta-mir-124a-1) | Bos taurus (cattle) | ||
22 | URS000075A939_13616 | N/A | seed | 7 | 79 | Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-124a precursor (mdo-mir-124a-1) | Monodelphis domestica (gray short-tailed opossum) | ||
23 | URS000075A939_9544 | N/A | seed | 7 | 79 | Macaca mulatta (Rhesus monkey) microRNA mml-mir-124a precursor (mml-mir-124a-2) | Macaca mulatta (Rhesus monkey) | ||
24 | URS00007E40FB_28377 | N/A | seed | 14 | 86 | Anolis carolinensis (green anole) microRNA aca-mir-124b precursor | Anolis carolinensis (green anole) | ||
25 | URS0000D53CEF_8665 | N/A | seed | 3 | 75 | Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-4) | Ophiophagus hannah (king cobra) | ||
26 | URS00007E41DA_9615 | N/A | seed | 1 | 59 | Canis lupus familiaris (dog) microRNA cfa-mir-124 precursor (cfa-mir-124-1) | Canis lupus familiaris (dog) | ||
27 | URS000075DA8A_7955 | N/A | seed | 6 | 78 | Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-2) | Danio rerio (zebrafish) | ||
28 | URS0000D55227_7998 | N/A | seed | 1 | 59 | Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-1) | Ictalurus punctatus (channel catfish) | ||
29 | URS000075B6D4_59729 | N/A | seed | 1 | 67 | Taeniopygia guttata (zebra finch) microRNA tgu-mir-124 precursor (tgu-mir-124-2) | Taeniopygia guttata | ||
30 | URS0000D51439_8665 | N/A | seed | 35 | 105 | Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-1) | Ophiophagus hannah (king cobra) | ||
31 | URS000075AE45_9796 | N/A | seed | 1 | 68 | Equus caballus (horse) microRNA eca-mir-124 precursor (eca-mir-124-1) | Equus caballus (horse) | ||
32 | URS000075D521_7955 | N/A | seed | 32 | 103 | Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-5) | Danio rerio (zebrafish) | ||
33 | URS0000D524E2_7998 | N/A | seed | 1 | 58 | Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-2) | Ictalurus punctatus (channel catfish) | ||
34 | URS0000812154_31033 | N/A | seed | 7 | 77 | Takifugu rubripes (torafugu) microRNA fru-mir-124 precursor (fru-mir-124-1, fru-mir-124-4) | Takifugu rubripes | ||
35 | URS000075CCD5_8090 | N/A | seed | 11 | 81 | Oryzias latipes (Japanese medaka) microRNA ola-mir-124 precursor (ola-mir-124-3) | Oryzias latipes (Japanese medaka) | ||
36 | URS000075A274_13616 | N/A | seed | 1 | 68 | Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-124a precursor (mdo-mir-124a-3) | Monodelphis domestica (gray short-tailed opossum) | ||
37 | URS000075D323_8090 | N/A | seed | 16 | 87 | Oryzias latipes (Japanese medaka) microRNA ola-mir-124 precursor (ola-mir-124-1) | Oryzias latipes (Japanese medaka) | ||
38 | URS000023AB58_9606 | N/A | seed | 19 | 88 | Homo sapiens (human) microRNA hsa-mir-124 precursor (hsa-mir-124-2) | Homo sapiens (human) | ||
39 | URS0000BC45D6_9593 | N/A | seed | 19 | 88 | Gorilla gorilla (western gorilla) microRNA ggo-mir-124a precursor | Gorilla gorilla (western gorilla) | ||
40 | URS000023AB58_9597 | N/A | seed | 19 | 88 | Pan paniscus (pygmy chimpanzee) microRNA ppa-mir-124a precursor | Pan paniscus (pygmy chimpanzee) | ||
41 | URS000023AB58_9598 | N/A | seed | 19 | 88 | Pan troglodytes (chimpanzee) microRNA ptr-mir-124a precursor | Pan troglodytes (chimpanzee) | ||
42 | URS000075E86C_10090 | N/A | seed | 19 | 88 | Mus musculus (house mouse) microRNA mmu-mir-124 precursor (mmu-mir-124-2) | Mus musculus (house mouse) | ||
43 | URS000075E86C_10116 | N/A | seed | 19 | 88 | Rattus norvegicus (Norway rat) microRNA rno-mir-124 precursor (rno-mir-124-2) | Rattus norvegicus (Norway rat) | ||
44 | URS00001A7A18_9509 | N/A | seed | 19 | 88 | Ateles geoffroyi (black-handed spider monkey) microRNA age-mir-124a precursor | Ateles geoffroyi (black-handed spider monkey) | ||
45 | URS000051F272_9544 | N/A | seed | 19 | 88 | Macaca mulatta (Rhesus monkey) microRNA mml-mir-124a precursor (mml-mir-124a-1) | Macaca mulatta (Rhesus monkey) | ||
46 | URS0000453EAF_9600 | N/A | seed | 19 | 88 | Pongo pygmaeus (Bornean orangutan) microRNA ppy-mir-124a precursor | Pongo pygmaeus (Bornean orangutan) | ||
47 | URS00001ECCF4_9519 | N/A | seed | 19 | 88 | Lagothrix lagotricha (brown woolly monkey) microRNA lla-mir-124a precursor | Lagothrix lagotricha (brown woolly monkey) | ||
48 | URS000075E29D_9913 | N/A | seed | 17 | 86 | Bos taurus (cattle) microRNA bta-mir-124a precursor (bta-mir-124a-2) | Bos taurus (cattle) | ||
49 | URS00007E4F26_9925 | N/A | seed | 17 | 86 | Capra hircus (goat) microRNA chi-mir-124a precursor | Capra hircus (goat) | ||
50 | URS000075D45E_9823 | N/A | seed | 16 | 85 | Sus scrofa (pig) microRNA ssc-mir-124a precursor (ssc-mir-124a-1) | Sus scrofa (pig) | ||
51 | URS0000D52B7E_29078 | N/A | seed | 5 | 74 | Eptesicus fuscus (big brown bat) microRNA efu-mir-124 precursor (efu-mir-124-2) | Eptesicus fuscus (big brown bat) | ||
52 | URS000075A3E1_9031 | N/A | seed | 8 | 78 | Gallus gallus (chicken) microRNA gga-mir-124a precursor | Gallus gallus (chicken) | ||
53 | URS0000D54D1F_7998 | N/A | seed | 1 | 57 | Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-3) | Ictalurus punctatus (channel catfish) | ||
54 | URS000075E5BB_7955 | N/A | seed | 24 | 94 | Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-3) | Danio rerio (zebrafish) | ||
55 | URS0000466435_10029 | N/A | seed | 6 | 75 | Cricetulus griseus (Chinese hamster) microRNA cgr-mir-124 precursor | Cricetulus griseus (Chinese hamster) | ||
56 | URS000075D8B4_13616 | N/A | seed | 13 | 83 | Monodelphis domestica (gray short-tailed opossum) microRNA mdo-mir-124a precursor (mdo-mir-124a-2) | Monodelphis domestica (gray short-tailed opossum) | ||
57 | URS0000A8FA4E_99883 | N/A | seed | 1 | 67 | Tetraodon nigroviridis (spotted green pufferfish) microRNA tni-mir-124 precursor (tni-mir-124-1) | Tetraodon nigroviridis | ||
58 | URS00007E3868_28377 | N/A | seed | 18 | 88 | Anolis carolinensis (green anole) microRNA aca-mir-124a precursor (aca-mir-124a-1) | Anolis carolinensis (green anole) | ||
59 | URS000075B845_8364 | N/A | seed | 10 | 80 | Xenopus tropicalis (tropical clawed frog) microRNA xtr-mir-124 precursor | Xenopus (Silurana) tropicalis (western clawed frog) | ||
60 | URS000075AFCA_59729 | N/A | seed | 37 | 107 | Taeniopygia guttata (zebra finch) microRNA tgu-mir-124 precursor (tgu-mir-124-1) | Taeniopygia guttata | ||
61 | URS00007E49D1_9615 | N/A | seed | 1 | 57 | Canis lupus familiaris (dog) microRNA cfa-mir-124 precursor (cfa-mir-124-2) | Canis lupus familiaris (dog) | ||
62 | URS000075E409_7955 | N/A | seed | 7 | 77 | Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-1) | Danio rerio (zebrafish) | ||
63 | URS00007E47E2_28377 | N/A | seed | 14 | 85 | Anolis carolinensis (green anole) microRNA aca-mir-124a precursor (aca-mir-124a-3) | Anolis carolinensis (green anole) | ||
64 | URS000075D1F7_9258 | N/A | seed | 11 | 83 | Ornithorhynchus anatinus (platypus) microRNA oan-mir-124a precursor (oan-mir-124a-1) | Ornithorhynchus anatinus (platypus) | ||
65 | URS00007E4458_9258 | N/A | seed | 1 | 60 | Ornithorhynchus anatinus (platypus) microRNA oan-mir-124a precursor (oan-mir-124a-2) | Ornithorhynchus anatinus (platypus) | ||
66 | URS0000D54412_7757 | N/A | seed | 5 | 75 | Petromyzon marinus (sea lamprey) microRNA pma-mir-124 precursor | Petromyzon marinus (sea lamprey) | ||
67 | URS000075B9C2_8090 | N/A | seed | 16 | 87 | Oryzias latipes (Japanese medaka) microRNA ola-mir-124 precursor (ola-mir-124-2) | Oryzias latipes (Japanese medaka) | ||
68 | URS00004E424E_7230 | N/A | seed | 16 | 83 | Drosophila mojavensis microRNA dmo-mir-124 precursor | Drosophila mojavensis | ||
69 | URS00004E424E_7244 | N/A | seed | 16 | 83 | Drosophila virilis microRNA dvi-mir-124 precursor | Drosophila virilis | ||
70 | URS000050A180_7222 | N/A | seed | 16 | 83 | Drosophila grimshawi microRNA dgr-mir-124 precursor | Drosophila grimshawi | ||
71 | URS00004D05FC_7217 | N/A | seed | 16 | 83 | Drosophila ananassae microRNA dan-mir-124 precursor | Drosophila ananassae | ||
72 | URS00001BC32D_7237 | N/A | seed | 16 | 83 | Drosophila pseudoobscura microRNA dps-mir-124 precursor | Drosophila pseudoobscura | ||
73 | URS000001B5F1_7234 | N/A | seed | 16 | 83 | Drosophila persimilis microRNA dpe-mir-124 precursor | Drosophila persimilis | ||
74 | URS0000320AE8_7227 | N/A | seed | 16 | 83 | Drosophila melanogaster (fruit fly) microRNA dme-mir-124 precursor | Drosophila melanogaster (fruit fly) | ||
75 | URS0000513D18_7220 | N/A | seed | 8 | 75 | Drosophila erecta microRNA der-mir-124 precursor | Drosophila erecta | ||
76 | URS0000513D18_7238 | N/A | seed | 8 | 75 | Drosophila sechellia microRNA dse-mir-124 precursor | Drosophila sechellia | ||
77 | URS0000513D18_7240 | N/A | seed | 8 | 75 | Drosophila simulans microRNA dsi-mir-124 precursor | Drosophila simulans | ||
78 | URS0000513D18_7245 | N/A | seed | 8 | 75 | Drosophila yakuba microRNA dya-mir-124 precursor | Drosophila yakuba | ||
79 | URS0000606C6A_7260 | N/A | seed | 16 | 83 | Drosophila willistoni microRNA dwi-mir-124 precursor | Drosophila willistoni | ||
80 | URS0000D5033B_7159 | N/A | seed | 3 | 76 | Aedes aegypti (yellow fever mosquito) microRNA aae-mir-124 precursor | Aedes aegypti (yellow fever mosquito) | ||
81 | URS00000C1BEA_7165 | N/A | seed | 6 | 79 | Anopheles gambiae (African malaria mosquito) microRNA aga-mir-124 precursor | Anopheles gambiae (African malaria mosquito) | ||
82 | URS0000D4F7B2_7176 | N/A | seed | 3 | 76 | Culex quinquefasciatus (southern house mosquito) microRNA cqu-mir-124 precursor | Culex quinquefasciatus (southern house mosquito) | ||
83 | URS000075A1AD_7091 | N/A | seed | 7 | 80 | Bombyx mori (domestic silkworm) microRNA bmo-mir-124 precursor | Bombyx mori (domestic silkworm) | ||
84 | URS0000D502C8_7130 | N/A | seed | 17 | 90 | Manduca sexta (tobacco hornworm) microRNA mse-mir-124 precursor | Manduca sexta (tobacco hornworm) | ||
85 | URS0000D550A2_6669 | N/A | seed | 12 | 87 | Daphnia pulex (common water flea) microRNA dpu-mir-124 precursor | Daphnia pulex | ||
86 | URS000075BF30_7029 | N/A | seed | 1 | 60 | Acyrthosiphon pisum (pea aphid) microRNA api-mir-124 precursor | Acyrthosiphon pisum (pea aphid) | ||
87 | URS0000D5117C_34740 | N/A | seed | 21 | 92 | Heliconius melpomene (postman butterfly) microRNA hme-mir-124 precursor | Heliconius melpomene | ||
88 | URS00006B610C_7070 | N/A | seed | 5 | 74 | Tribolium castaneum (red flour beetle) microRNA tca-mir-124 precursor | Tribolium castaneum (red flour beetle) | ||
89 | URS000075B27C_7460 | N/A | seed | 1 | 77 | Apis mellifera (honey bee) microRNA ame-mir-124 precursor | Apis mellifera (honey bee) | ||
90 | URS000075C5D0_7425 | N/A | seed | 1 | 77 | Nasonia vitripennis (jewel wasp) microRNA nvi-mir-124 precursor | Nasonia vitripennis (jewel wasp) | ||
91 | URS0000D55FB5_6945 | N/A | seed | 16 | 87 | Ixodes scapularis (black-legged tick) microRNA isc-mir-124 precursor | Ixodes scapularis (black-legged tick) | ||
92 | URS000075AF70_7668 | N/A | seed | 15 | 87 | Strongylocentrotus purpuratus microRNA spu-mir-124 precursor | Strongylocentrotus purpuratus | ||
93 | URS0000D51E39_7654 | N/A | seed | 15 | 87 | Lytechinus variegatus (green sea urchin) microRNA lva-mir-124 precursor | Lytechinus variegatus (green sea urchin) | ||
94 | URS0000D516F4_46514 | N/A | seed | 15 | 90 | Patiria miniata microRNA pmi-mir-124 precursor | Patiria miniata | ||
95 | URS000075D648_10224 | N/A | seed | 15 | 86 | Saccoglossus kowalevskii microRNA sko-mir-124 precursor | Saccoglossus kowalevskii | ||
96 | URS0000D51F70_7739 | N/A | seed | 17 | 87 | Branchiostoma floridae (Florida lancelet) microRNA bfl-mir-124 precursor | Branchiostoma floridae (Florida lancelet) | ||
97 | URS0000D51F70_7741 | N/A | seed | 17 | 87 | Branchiostoma belcheri (Belcher's lancelet) microRNA bbe-mir-124 precursor | Branchiostoma belcheri (Belcher's lancelet) | ||
98 | URS0000D4F562_32264 | N/A | seed | 1 | 74 | Tetranychus urticae (two-spotted spider mite) microRNA tur-mir-124 precursor (tur-mir-124-2) | Tetranychus urticae (two-spotted spider mite) | ||
99 | URS0000D5405F_32264 | N/A | seed | 21 | 94 | Tetranychus urticae (two-spotted spider mite) microRNA tur-mir-124 precursor (tur-mir-124-1) | Tetranychus urticae (two-spotted spider mite) | ||
100 | URS0000D541B5_225164 | N/A | seed | 16 | 87 | Lottia gigantea (owl limpet) microRNA lgi-mir-124 precursor | Lottia gigantea | ||
101 | URS000075AA01_31033 | N/A | seed | 7 | 78 | Takifugu rubripes (torafugu) microRNA fru-mir-124 precursor (fru-mir-124-3) | Takifugu rubripes | ||
102 | URS0000D528AB_99883 | N/A | seed | 7 | 78 | Tetraodon nigroviridis (spotted green pufferfish) microRNA tni-mir-124 precursor (tni-mir-124-3) | Tetraodon nigroviridis | ||
103 | URS000075EA85_7955 | N/A | seed | 7 | 78 | Danio rerio (zebrafish) microRNA dre-mir-124 precursor (dre-mir-124-4) | Danio rerio (zebrafish) | ||
104 | URS000075C474_7719 | N/A | seed | 4 | 73 | Ciona intestinalis microRNA cin-mir-124 precursor (cin-mir-124-1) | Ciona intestinalis | ||
105 | URS0000A9EEA2_51511 | N/A | seed | 23 | 92 | Ciona savignyi microRNA csa-mir-124 precursor (csa-mir-124-1) | Ciona savignyi | ||
106 | URS000075CFEE_7719 | N/A | seed | 21 | 90 | Ciona intestinalis microRNA cin-mir-124 precursor (cin-mir-124-2) | Ciona intestinalis | ||
107 | URS0000A836A6_51511 | N/A | seed | 23 | 92 | Ciona savignyi microRNA csa-mir-124 precursor (csa-mir-124-2) | Ciona savignyi | ||
108 | URS0000D53DA2_283909 | N/A | seed | 16 | 87 | Capitella teleta microRNA cte-mir-124 precursor | Capitella teleta | ||
109 | URS0000D56B1D_242395 | N/A | seed | 18 | 90 | Xenoturbella bocki microRNA xbo-mir-124 precursor | Xenoturbella bocki | ||
110 | URS0000AB04F9_7998 | N/A | seed | 1 | 58 | Ictalurus punctatus (channel catfish) microRNA ipu-mir-124a precursor (ipu-mir-124a-4) | Ictalurus punctatus (channel catfish) | ||
111 | URS0000D569FB_8665 | N/A | seed | 3 | 73 | Ophiophagus hannah (king cobra) microRNA oha-mir-124 precursor (oha-mir-124-3) | Ophiophagus hannah (king cobra) | ||
112 | URS000075B14D_9796 | N/A | seed | 1 | 56 | Equus caballus (horse) microRNA eca-mir-124 precursor (eca-mir-124-2) | Equus caballus (horse) | ||
113 | URS000075EC27_9031 | N/A | seed | 8 | 77 | Gallus gallus (chicken) microRNA gga-mir-124b precursor | Gallus gallus (chicken) | ||
114 | URS00002458B9_31234 | N/A | seed | 8 | 85 | Caenorhabditis remanei microRNA crm-mir-124a precursor | Caenorhabditis remanei | ||
115 | URS0000D504D2_135651 | N/A | seed | 1 | 64 | Caenorhabditis brenneri microRNA cbn-mir-124 precursor (cbn-mir-124-1, cbn-mir-124-2) | Caenorhabditis brenneri | ||
116 | URS0000D55DDB_6238 | N/A | seed | 10 | 87 | Caenorhabditis briggsae microRNA cbr-mir-124a precursor | Caenorhabditis briggsae | ||
117 | URS0000324A65_6239 | N/A | seed | 10 | 87 | Caenorhabditis elegans microRNA cel-mir-124 precursor | Caenorhabditis elegans | ||
118 | URS0000D54FBE_6289 | N/A | seed | 16 | 83 | Haemonchus contortus (barber pole worm) microRNA hco-mir-124 precursor | Haemonchus contortus | ||
119 | URS0000D4F335_6233 | N/A | seed | 1 | 60 | Panagrellus redivivus microRNA prd-mir-124 precursor | Panagrellus redivivus | ||
120 | URS0000D5361C_54126 | N/A | seed | 15 | 87 | Pristionchus pacificus microRNA ppc-mir-124 precursor | Pristionchus pacificus | ||
121 | URS0000D55D68_6253 | N/A | seed | 3 | 72 | Ascaris suum (pig roundworm) microRNA asu-mir-124 precursor | Ascaris suum (pig roundworm) | ||
0 | QEPC01014500.1 | 87.70 | full | 818,274 | 818,344 | QEPC01014500.1 Sphenodon punctatus isolate mauimua-1 ScrUdWx_1759, whole genome shotgun sequence | Sphenodon punctatus (tuatara) |
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1 | AZIM01001477.1 | 86.90 | full | 191,578 | 191,648 | Ophiophagus hannah scaffold1478.1, whole genome shotgun sequence. | Ophiophagus hannah (king cobra) |
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2 | BHFT01000111.1 | 86.90 | full | 39,856 | 39,926 | BHFT01000111.1 Laticauda laticaudata KUZ | Laticauda laticaudata (blue-ringed sea krait) |
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3 | CM000370.1 | 86.90 | full | 173,742,304 | 173,742,234 | Monodelphis domestica chromosome 3, whole genome shotgun sequence. | Monodelphis domestica (gray short-tailed opossum) |
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4 | CM019150.1 | 86.90 | full | 182,506,870 | 182,506,940 | CM019150.1 Naja naja isolate NN01 chromosome 3, whole genome shotgun sequence | Naja naja |
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5 | KL891695.1 | 86.90 | full | 385,913 | 385,843 | KL891695.1 Tinamus guttatus isolate BGI_N309 unplaced genomic scaffold scaffold3824, whole genome shotgun sequence | Tinamus guttatus |
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6 | LR735554.1 | 86.90 | full | 456,666,972 | 456,666,902 | LR735554.1 Sarcophilus harrisii genome assembly, chromosome: 1 | Sarcophilus harrisii (Tasmanian devil) |
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7 | NW_013658004.1 | 86.90 | full | 706,686 | 706,616 | NW_013658004.1 Thamnophis sirtalis isolate EDBJR-23777 unplaced genomic scaffold, Thamnophis_sirtalis-6.0 Scaffold324, whole genome shotgun sequence | Thamnophis sirtalis |
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8 | NW_018344046.1 | 86.90 | full | 7,666,552 | 7,666,482 | NW_018344046.1 Phascolarctos cinereus isolate Bilbo 61053 unplaced genomic scaffold, phaCin_unsw_v4.1 phaCin_unsw_v4.1.fa.scaf00095, whole genome shotgun sequence | Phascolarctos cinereus (koala) |
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9 | NW_020716616.1 | 86.90 | full | 21,175,509 | 21,175,439 | NW_020716616.1 Notechis scutatus unplaced genomic scaffold, TS10Xv2-PRI ULFQ01000006.1, whole genome shotgun sequence | Notechis scutatus |
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10 | NW_023010796.1 | 86.90 | full | 34,549,938 | 34,550,008 | NW_023010796.1 Pantherophis guttatus isolate EG266 unplaced genomic scaffold, UNIGE_PanGut_3.0 Super-Scaffold_450, whole genome shotgun sequence | Pantherophis guttatus |
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11 | SJPD01000018.1 | 86.90 | full | 13,668,617 | 13,668,547 | SJPD01000018.1 Varanus komodoensis strain SLA01 scaffold14_1, whole genome shotgun sequence | Varanus komodoensis |
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12 | ULFR01000031.1 | 86.90 | full | 12,095,273 | 12,095,203 | ULFR01000031.1 Pseudonaja textilis genome assembly, contig: ahap_PSETE__EBS10XV2AHAP231, whole genome shotgun sequence | Pseudonaja textilis |
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13 | UNPS02014812.1 | 86.90 | full | 10,158,858 | 10,158,928 | UNPS02014812.1 Vombatus ursinus genome assembly, contig: WM1_genome_scaffold14812, whole genome shotgun sequence | Vombatus ursinus (common wombat) |
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14 | UNPS02014812.1 | 86.90 | full | 86,116,521 | 86,116,591 | UNPS02014812.1 Vombatus ursinus genome assembly, contig: WM1_genome_scaffold14812, whole genome shotgun sequence | Vombatus ursinus (common wombat) |
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15 | CM000322.4 | 86.90 | full | 65,469,888 | 65,469,958 | Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 8, whole genome shotgun sequence. | Pan troglodytes (chimpanzee) |
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16 | CM000670.2 | 86.90 | full | 64,379,166 | 64,379,236 | Homo sapiens chromosome 8, GRCh38 reference primary assembly. | Homo sapiens (human) |
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17 | CM000996.3 | 86.90 | full | 17,849,843 | 17,849,913 | CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J | Mus musculus (house mouse) |
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18 | CM003391.1 | 86.90 | full | 62,587,948 | 62,588,018 | CM003391.1 Pan paniscus isolate Ulindi chromosome 8, whole genome shotgun sequence | Pan paniscus (pygmy chimpanzee) |
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19 | CM026975.1 | 86.90 | full | 100,134,883 | 100,134,953 | CM026975.1 Rattus norvegicus strain BN/NHsdMcwi chromosome 2, whole genome shotgun sequence | Rattus norvegicus (Norway rat) |
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20 | FR853101.2 | 86.90 | full | 51,160,889 | 51,160,819 | Gorilla gorilla gorilla genomic chromosome, chr8, whole genome shotgun sequence | Gorilla gorilla gorilla (western lowland gorilla) |
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21 | NW_007261356.1 | 86.90 | full | 54,563 | 54,633 | NW_007261356.1 Carlito syrichta isolate Samal-C Ts95f unplaced genomic scaffold, Tarsius_syrichta-2.0.1 Scaffold317260, whole genome shotgun sequence | Carlito syrichta (Philippine tarsier) |
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22 | QGOO02000013.1 | 86.90 | full | 14,228,282 | 14,228,352 | QGOO02000013.1 Mus spicilegus strain ZRU musp714_scaffold_00013b, whole genome shotgun sequence | Mus spicilegus (steppe mouse) |
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23 | KI635902.1 | 86.60 | full | 2,043,226 | 2,043,296 | KI635902.1 Callorhinchus milii isolate IMCB2004 unplaced genomic scaffold scaffold_48, whole genome shotgun sequence | Callorhinchus milii (ghost shark) |
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24 | CM017910.1 | 86.60 | full | 4,839,903 | 4,839,831 | CM017910.1 Triplophysa tibetana isolate TTIB1903HZAU chromosome 18, whole genome shotgun sequence | Triplophysa tibetana |
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25 | CM045787.1 | 86.60 | full | 4,860,283 | 4,860,211 | CM045787.1 Triplophysa rosa linkage group LG15, whole genome shotgun sequence | Triplophysa rosa (cave loach) |
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26 | LR535826.1 | 86.60 | full | 10,493,796 | 10,493,724 | LR535826.1 Denticeps clupeoides genome assembly, chromosome: 14 | Denticeps clupeoides (denticle herring) |
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27 | NC_044498.1 | 86.60 | full | 26,480,482 | 26,480,410 | NC_044498.1 Chanos chanos chromosome 4, fChaCha1.1, whole genome shotgun sequence | Chanos chanos (milkfish) |
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28 | RBHW02000005.1 | 86.60 | full | 1,120,918 | 1,120,990 | RBHW02000005.1 Electrophorus electricus isolate MRS-EE1 scaffold18, whole genome shotgun sequence | Electrophorus electricus (electric eel) |
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29 | CP026263.1 | 86.60 | full | 2,909,651 | 2,909,721 | CP026263.1 Scophthalmus maximus chromosome 21 | Scophthalmus maximus (turbot) |
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30 | LR131990.1 | 86.50 | full | 17,628,701 | 17,628,771 | LR131990.1 Gouania willdenowi genome assembly, chromosome: 20 | Gouania willdenowi (blunt-snouted clingfish) |
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31 | CM034098.1 | 86.50 | full | 57,794,968 | 57,794,897 | CM034098.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 13, whole genome shotgun sequence | Eleutherodactylus coqui (Puerto Rican coqui) |
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32 | QVOM02000029.1 | 86.50 | full | 51,329,713 | 51,329,643 | QVOM02000029.1 Salvator merianae strain LG2117 Scaffold_29, whole genome shotgun sequence | Tupinambis merianae |
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33 | NW_006536552.1 | 86.40 | full | 32,702 | 32,632 | NW_006536552.1 Python bivittatus unplaced genomic scaffold, Python_molurus_bivittatus-5.0.2 Scaffold4538, whole genome shotgun sequence | Python molurus bivittatus (Burmese python) |
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34 | CM031323.1 | 86.40 | full | 18,278,799 | 18,278,729 | CM031323.1 Anguilla anguilla isolate tag_6206 chromosome 4, whole genome shotgun sequence | Anguilla anguilla (European eel) |
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35 | CM040756.1 | 86.40 | full | 17,586,181 | 17,586,111 | CM040756.1 Albula goreensis ecotype Florida chromosome 16, whole genome shotgun sequence | Albula goreensis |
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36 | CM056377.1 | 86.40 | full | 115,456,018 | 115,455,948 | CM056377.1 Synaphobranchus kaupii isolate WJC10195 ecotype Taiwan chromosome 2, whole genome shotgun sequence | Synaphobranchus kaupii (Kaup's arrowtooth eel) |
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37 | JAFBMS010000012.1 | 86.40 | full | 10,575,158 | 10,575,088 | JAFBMS010000012.1 Albula glossodonta isolate HI-2016 scaffold_11, whole genome shotgun sequence | Albula glossodonta (roundjaw bonefish) |
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38 | VZSX01000056.1 | 86.40 | full | 5,173,154 | 5,173,224 | VZSX01000056.1 Eudromia elegans voucher LSUMZ:Ornithology:B16893 isolate B10K-LSUMZ-16893 scaffold_55, whole genome shotgun sequence | Eudromia elegans (elegant crested-tinamou) |
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39 | CM029059.1 | 86.30 | full | 47,674,327 | 47,674,397 | CM029059.1 Polypterus senegalus isolate Bchr_013 chromosome 5, whole genome shotgun sequence | Polypterus senegalus |
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40 | LR536437.2 | 86.30 | full | 51,762,179 | 51,762,249 | LR536437.2 Erpetoichthys calabaricus genome assembly, chromosome: 6 | Erpetoichthys calabaricus (reedfish) |
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41 | NW_018151492.1 | 86.30 | full | 156,662 | 156,592 | NW_018151492.1 Pogona vitticeps unplaced genomic scaffold, pvi1.1.0 contig14579, whole genome shotgun sequence | Pogona vitticeps (central bearded dragon) |
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42 | BFAA01017286.1 | 86.30 | full | 17,084 | 17,154 | BFAA01017286.1 Scyliorhinus torazame DNA, scf_scyto00017286, whole genome shotgun sequence | Scyliorhinus torazame (cloudy catshark) |
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43 | AKCR02000001.1 | 86.20 | full | 36,133,624 | 36,133,554 | AKCR02000001.1 Columba livia breed Danish Tumbler ScoHet5_20, whole genome shotgun sequence | Columba livia (Rock pigeon) |
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44 | BJBX01025817.1 | 86.20 | full | 89 | 159 | BJBX01025817.1 Accipiter nisus DNA, Acni_25817, cell line: 158A, whole genome shotgun sequence | Accipiter nisus (Eurasian sparrowhawk) |
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45 | CM001990.1 | 86.20 | full | 120,676,305 | 120,676,375 | Ficedula albicollis isolate OC2 chromosome 2, whole genome shotgun sequence. | Ficedula albicollis |
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46 | CM002017.1 | 86.20 | full | 35,782,381 | 35,782,451 | Ficedula albicollis isolate OC2 chromosome Z, whole genome shotgun sequence. | Ficedula albicollis |
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47 | CM002656.2 | 86.20 | full | 160,354,943 | 160,354,873 | CM002656.2 Chrysemys picta bellii isolate RCT428 chromosome 2, whole genome shotgun sequence | Chrysemys picta bellii (western painted turtle) |
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48 | CM008539.1 | 86.20 | full | 120,853,763 | 120,853,833 | CM008539.1 Anas platyrhynchos platyrhynchos breed Pekin duck chromosome 2, whole genome shotgun sequence | Anas platyrhynchos platyrhynchos (common mallard) |
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49 | CM012083.2 | 86.20 | full | 115,909,145 | 115,909,215 | CM012083.2 Taeniopygia guttata isolate Black17 chromosome 2, whole genome shotgun sequence | Taeniopygia guttata |
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50 | CM013761.2 | 86.20 | full | 36,146,119 | 36,146,049 | CM013761.2 Strigops habroptila isolate Jane chromosome 1, whole genome shotgun sequence | Strigops habroptila (kakapo) |
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51 | CM018620.1 | 86.20 | full | 104,565,443 | 104,565,513 | CM018620.1 Cairina moschata domestica isolate CanardBarbarie3_02_2015_G chromosome 2, whole genome shotgun sequence | Cairina moschata domestica (muscovy duck (domestic type)) |
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52 | CM018620.1 | 86.20 | full | 104,587,532 | 104,587,602 | CM018620.1 Cairina moschata domestica isolate CanardBarbarie3_02_2015_G chromosome 2, whole genome shotgun sequence | Cairina moschata domestica (muscovy duck (domestic type)) |
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53 | CM019215.1 | 86.20 | full | 35,207,243 | 35,207,173 | CM019215.1 Malurus cyaneus samueli chromosome 2, whole genome shotgun sequence | Malurus cyaneus samueli |
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54 | CM020336.1 | 86.20 | full | 124,363,358 | 124,363,428 | CM020336.1 Catharus ustulatus isolate bCatUst1 chromosome 1, whole genome shotgun sequence | Catharus ustulatus |
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55 | CM032898.1 | 86.20 | full | 3,989,723 | 3,989,653 | CM032898.1 Megalops atlanticus isolate YG-15Mar2019-1 chromosome 24, whole genome shotgun sequence | Megalops atlanticus (tarpon) |
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56 | CM034093.1 | 86.20 | full | 37,818,509 | 37,818,439 | CM034093.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 8, whole genome shotgun sequence | Eleutherodactylus coqui (Puerto Rican coqui) |
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57 | CM035634.1 | 86.20 | full | 64,980,153 | 64,980,083 | CM035634.1 Mauremys mutica isolate MM-2020 ecotype Southern chromosome 2, whole genome shotgun sequence | Mauremys mutica |
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58 | CM040304.1 | 86.20 | full | 115,585,640 | 115,585,710 | CM040304.1 Lamprotornis superbus isolate SS15 chromosome 2, whole genome shotgun sequence | Lamprotornis superbus |
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59 | CM040743.1 | 86.20 | full | 8,103,268 | 8,103,338 | CM040743.1 Albula goreensis ecotype Florida chromosome 3, whole genome shotgun sequence | Albula goreensis |
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60 | CM042575.1 | 86.20 | full | 116,841,160 | 116,841,230 | CM042575.1 Junco hyemalis ecotype carolinensis chromosome 2, whole genome shotgun sequence | Junco hyemalis (dark-eyed junco) |
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61 | CM056182.1 | 86.20 | full | 20,020,122 | 20,020,192 | CM056182.1 Conger conger isolate Concon-B chromosome 9, whole genome shotgun sequence | Conger conger |
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62 | CM056394.1 | 86.20 | full | 15,782,739 | 15,782,809 | CM056394.1 Synaphobranchus kaupii isolate WJC10195 ecotype Taiwan chromosome 19, whole genome shotgun sequence | Synaphobranchus kaupii (Kaup's arrowtooth eel) |
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63 | HG009209.1 | 86.20 | full | 55,456,591 | 55,456,521 | HG009209.1 Serinus canaria genomic scaffold, SCA1_u1, whole genome shotgun sequence | Serinus canaria (common canary) |
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64 | JAFBMS010000001.1 | 86.20 | full | 3,755,747 | 3,755,817 | JAFBMS010000001.1 Albula glossodonta isolate HI-2016 scaffold_0, whole genome shotgun sequence | Albula glossodonta (roundjaw bonefish) |
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65 | JH556613.1 | 86.20 | full | 2,567,749 | 2,567,679 | JH556613.1 Melopsittacus undulatus unplaced genomic scaffold budgerigar_v6.3_scf900160277066, whole genome shotgun sequence | Melopsittacus undulatus (budgerigar) |
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66 | JJRK01026698.1 | 86.20 | full | 793 | 863 | Leptosomus discolor contig26698, whole genome shotgun sequence. | Leptosomus discolor |
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67 | JJRN01004472.1 | 86.20 | full | 258 | 328 | Fulmarus glacialis contig4472, whole genome shotgun sequence. | Fulmarus glacialis (northern fulmar) |
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68 | JMFJ01105919.1 | 86.20 | full | 47 | 117 | Chlamydotis undulata macqueenii contig105919, whole genome shotgun sequence. | Chlamydotis undulata macqueenii |
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69 | JMFV01054668.1 | 86.20 | full | 403 | 473 | Apaloderma vittatum contig54668, whole genome shotgun sequence. | Apaloderma vittatum |
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70 | KB533245.1 | 86.20 | full | 1,285,998 | 1,285,928 | KB533245.1 Chelonia mydas unplaced genomic scaffold scaffold311, whole genome shotgun sequence | Chelonia mydas (green seaturtle) |
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71 | KB742428.1 | 86.20 | full | 524,953 | 525,023 | KB742428.1 Anas platyrhynchos breed Pekin duck unplaced genomic scaffold scaffold45, whole genome shotgun sequence | Anas platyrhynchos |
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72 | KB913038.1 | 86.20 | full | 10,945,733 | 10,945,803 | KB913038.1 Zonotrichia albicollis isolate Tan morph unplaced genomic scaffold Scaffold0, whole genome shotgun sequence | Zonotrichia albicollis |
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73 | KK501010.1 | 86.20 | full | 1,015,189 | 1,015,119 | KK501010.1 Egretta garzetta isolate BGI_Z169 unplaced genomic scaffold scaffold132, whole genome shotgun sequence | Egretta garzetta |
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74 | KK554279.1 | 86.20 | full | 513 | 443 | KK554279.1 Eurypyga helias isolate BGI_N326 unplaced genomic scaffold scaffold25460, whole genome shotgun sequence | Eurypyga helias (sunbittern) |
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75 | KK643731.1 | 86.20 | full | 117 | 187 | KK643731.1 Haliaeetus albicilla isolate BGI_N329 unplaced genomic scaffold scaffold36411, whole genome shotgun sequence | Haliaeetus albicilla (white-tailed eagle) |
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76 | KK717790.1 | 86.20 | full | 547,120 | 547,190 | Corvus brachyrhynchos isolate BGI_N302 unplaced genomic scaffold scaffold230, whole genome shotgun sequence. | Corvus brachyrhynchos (American crow) |
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77 | KK735245.1 | 86.20 | full | 6,606,814 | 6,606,884 | KK735245.1 Opisthocomus hoazin isolate BGI_N306 unplaced genomic scaffold scaffold65, whole genome shotgun sequence | Opisthocomus hoazin |
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78 | KK933718.1 | 86.20 | full | 845 | 915 | KK933718.1 Nestor notabilis isolate BGI_N333 unplaced genomic scaffold scaffold19632, whole genome shotgun sequence | Nestor notabilis |
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79 | KL206239.1 | 86.20 | full | 665,459 | 665,389 | KL206239.1 Struthio camelus australis isolate BGI_N308 unplaced genomic scaffold scaffold124, whole genome shotgun sequence | Struthio camelus australis |
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80 | KL216546.1 | 86.20 | full | 1,671,492 | 1,671,422 | KL216546.1 Picoides pubescens isolate BGI_N307 unplaced genomic scaffold scaffold136, whole genome shotgun sequence | Picoides pubescens (downy woodpecker) |
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81 | KL217835.1 | 86.20 | full | 3,047,778 | 3,047,848 | KL217835.1 Calypte anna isolate BGI_N300 unplaced genomic scaffold scaffold3, whole genome shotgun sequence | Calypte anna (Anna's hummingbird) |
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82 | KL225490.1 | 86.20 | full | 370,370 | 370,440 | KL225490.1 Pygoscelis adeliae isolate BGI_AS28 unplaced genomic scaffold Scaffold329, whole genome shotgun sequence | Pygoscelis adeliae (Adelie penguin) |
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83 | KL225664.1 | 86.20 | full | 701,407 | 701,337 | KL225664.1 Aptenodytes forsteri isolate BGI_AS27 unplaced genomic scaffold Scaffold396, whole genome shotgun sequence | Aptenodytes forsteri (emperor penguin) |
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84 | KL227316.1 | 86.20 | full | 546 | 476 | KL227316.1 Pterocles gutturalis isolate BGI_N339 unplaced genomic scaffold scaffold37136, whole genome shotgun sequence | Pterocles gutturalis (yellow-throated sandgrouse) |
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85 | KL354438.1 | 86.20 | full | 763 | 693 | KL354438.1 Caprimulgus carolinensis isolate BGI_N321 unplaced genomic scaffold scaffold31906, whole genome shotgun sequence | Caprimulgus carolinensis (chuck-will's-widow) |
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86 | KL410253.1 | 86.20 | full | 591,593 | 591,663 | KL410253.1 Nipponia nippon isolate BGI_Y956 unplaced genomic scaffold Scaffold393, whole genome shotgun sequence | Nipponia nippon (crested ibis) |
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87 | KL447843.1 | 86.20 | full | 15,357 | 15,287 | Cuculus canorus isolate BGI_N303 unplaced genomic scaffold scaffold206, whole genome shotgun sequence. | Cuculus canorus (common cuckoo) |
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88 | KL528926.1 | 86.20 | full | 728 | 658 | KL528926.1 Buceros rhinoceros silvestris isolate BGI_N320 unplaced genomic scaffold scaffold40097, whole genome shotgun sequence | Buceros rhinoceros silvestris |
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89 | KL670064.1 | 86.20 | full | 437,146 | 437,076 | KL670064.1 Manacus vitellinus isolate BGI_N305 unplaced genomic scaffold scaffold383, whole genome shotgun sequence | Manacus vitellinus (golden-collared manakin) |
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90 | KL872865.1 | 86.20 | full | 671,191 | 671,121 | KL872865.1 Charadrius vociferus isolate BGI_N301 unplaced genomic scaffold scaffold167, whole genome shotgun sequence | Charadrius vociferus |
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91 | KN126263.1 | 86.20 | full | 2,951,150 | 2,951,220 | KN126263.1 Chaetura pelagica isolate M959 unplaced genomic scaffold scaffold83, whole genome shotgun sequence | Chaetura pelagica (chimney swift) |
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92 | KZ155862.1 | 86.20 | full | 2,198,722 | 2,198,652 | KZ155862.1 Anser cygnoides isolate SCWG-2014 breed Sichuan white goose unplaced genomic scaffold scaffold21, whole genome shotgun sequence | Anser cygnoides (Chinese goose) |
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93 | KZ516809.1 | 86.20 | full | 4,207 | 4,277 | KZ516809.1 Limosa lapponica baueri isolate BTGAFAM01 unplaced genomic scaffold scaffold11179, whole genome shotgun sequence | Limosa lapponica baueri |
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94 | LMAW01002974.1 | 86.20 | full | 332,246 | 332,176 | Amazona aestiva scaffold_766, whole genome shotgun sequence. | Amazona aestiva (blue-fronted amazon) |
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|
95 | LR595695.1 | 86.20 | full | 116,395,242 | 116,395,312 | LR595695.1 Camarhynchus parvulus genome assembly, chromosome: 2, whole genome shotgun sequence | Camarhynchus parvulus |
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96 | LR606184.1 | 86.20 | full | 39,312,434 | 39,312,364 | LR606184.1 Aquila chrysaetos chrysaetos genome assembly, chromosome: 4 | Aquila chrysaetos chrysaetos |
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|
97 | LSYS01003169.1 | 86.20 | full | 15,641,414 | 15,641,484 | Patagioenas fasciata monilis isolate BTP2013 Sc31e1R_20, whole genome shotgun sequence. | Patagioenas fasciata monilis |
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98 | ML689129.1 | 86.20 | full | 56,734,219 | 56,734,289 | ML689129.1 Chelydra serpentina unplaced genomic scaffold Scaffold184, whole genome shotgun sequence | Chelydra serpentina (snapping turtle) |
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|
99 | ML980312.1 | 86.20 | full | 697,837 | 697,767 | ML980312.1 Bubo bubo isolate eeo-nibr-513 unplaced genomic scaffold scaffold522, whole genome shotgun sequence | Bubo bubo |
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|
100 | ML989766.1 | 86.20 | full | 21,246,018 | 21,245,948 | ML989766.1 Buteo japonicus isolate eb-nibr-220 unplaced genomic scaffold scaffold5, whole genome shotgun sequence | Buteo japonicus |
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101 | ML996886.1 | 86.20 | full | 25,935,620 | 25,935,690 | ML996886.1 Falco tinnunculus isolate ck-nibr-243 unplaced genomic scaffold scaffold58, whole genome shotgun sequence | Falco tinnunculus (common kestrel) |
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102 | MU001491.1 | 86.20 | full | 62,412,014 | 62,412,084 | MU001491.1 Otus sunia isolate oso-nibr-517 unplaced genomic scaffold scaffold45, whole genome shotgun sequence | Otus sunia (Oriental scops-owl) |
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103 | MU273260.1 | 86.20 | full | 58,930,855 | 58,930,925 | MU273260.1 Melospiza melodia isolate OUT-0008 unplaced genomic scaffold Super-Scaffold_9, whole genome shotgun sequence | Melospiza melodia (song sparrow) |
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104 | MUZQ01000013.1 | 86.20 | full | 2,090,368 | 2,090,298 | MUZQ01000013.1 Lonchura striata domestica isolate white83orange57 scaffold_12, whole genome shotgun sequence | Lonchura striata domestica (Bengalese finch) |
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105 | NC_045560.1 | 86.20 | full | 122,907,912 | 122,907,982 | NC_045560.1 Aythya fuligula isolate bAytFul2 chromosome 2, bAytFul2.pri, whole genome shotgun sequence | Aythya fuligula (tufted duck) |
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106 | NIFN02000002.1 | 86.20 | full | 33,633,225 | 33,633,295 | NIFN02000002.1 Strix occidentalis caurina voucher CAS:ORN:98821 isolate Sequoia Super-Scaffold_7, whole genome shotgun sequence | Strix occidentalis caurina |
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107 | NOIK01000149.1 | 86.20 | full | 1,669,028 | 1,669,098 | NOIK01000149.1 Anas zonorhyncha breed spot-billed scaffold151, whole genome shotgun sequence | Anas zonorhyncha |
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|
108 | NW_005054346.1 | 86.20 | full | 3,628,461 | 3,628,391 | NW_005054346.1 Geospiza fortis unplaced genomic scaffold, GeoFor_1.0 scaffold121, whole genome shotgun sequence | Geospiza fortis |
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|
109 | NW_014003727.1 | 86.20 | full | 765,561 | 765,491 | NW_014003727.1 Apteryx australis mantelli unplaced genomic scaffold, AptMant0 scaffold52 | Apteryx australis mantelli |
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|
110 | NW_016690346.1 | 86.20 | full | 1,987,693 | 1,987,763 | NW_016690346.1 Lepidothrix coronata isolate B3197 unplaced genomic scaffold, Lepidothrix_coronata-1.0 Scaffold166, whole genome shotgun sequence | Lepidothrix coronata |
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111 | NW_024103862.1 | 86.20 | full | 748,222 | 748,292 | NW_024103862.1 Pipra filicauda isolate LSUMZ 115617 unplaced genomic scaffold, ASM394559v2 scaffold138_size1969278_pilon, whole genome shotgun sequence | Pipra filicauda |
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112 | NXHY01000063.1 | 86.20 | full | 4,324,933 | 4,325,003 | NXHY01000063.1 Anser brachyrhynchus strain PFG001 scaffold_62, whole genome shotgun sequence | Anser brachyrhynchus (pink-footed goose) |
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113 | PDCF01000013.1 | 86.20 | full | 16,850,635 | 16,850,565 | PDCF01000013.1 Cyanistes caeruleus isolate BT333_1 chromosome 2 chr2_part3, whole genome shotgun sequence | Cyanistes caeruleus |
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114 | PKMU01001181.1 | 86.20 | full | 428,753 | 428,683 | PKMU01001181.1 Chelonoidis abingdonii isolate Lonesome George Contig1501, whole genome shotgun sequence | Geochelone nigra abingdoni |
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115 | PRFB02000059.1 | 86.20 | full | 53,968,839 | 53,968,909 | PRFB02000059.1 Terrapene triunguis isolate 2854851 Scaffold58, whole genome shotgun sequence | Terrapene carolina triunguis (three-toed box turtle) |
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116 | PTFC01000367.1 | 86.20 | full | 670,959 | 670,889 | PTFC01000367.1 Apteryx owenii voucher ROM:ORN:O20599 isolate O20599 scaffold_366, whole genome shotgun sequence | Apteryx owenii (little spotted kiwi) |
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117 | QRBI01000104.1 | 86.20 | full | 36,432,123 | 36,432,053 | QRBI01000104.1 Hirundo rustica rustica isolate Chelidonia Super-Scaffold_13, whole genome shotgun sequence | Hirundo rustica rustica |
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118 | QUSF01000001.1 | 86.20 | full | 34,737,359 | 34,737,429 | QUSF01000001.1 Chloebia gouldiae isolate Red01 scaffold_1, whole genome shotgun sequence | Erythrura gouldiae (Gouldian finch) |
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119 | QXTE01000033.1 | 86.20 | full | 1,679,170 | 1,679,100 | QXTE01000033.1 Platysternon megacephalum isolate DO16091913 scaf33, whole genome shotgun sequence | Platysternon megacephalum (big-headed turtle) |
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120 | RQIO01000001.1 | 86.20 | full | 37,438,301 | 37,438,231 | RQIO01000001.1 Amazona collaria isolate JAMY3 TDTX972-JAMY3_00001, whole genome shotgun sequence | Amazona collaria (yellow-billed parrot) |
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121 | SCEB01000398.1 | 86.20 | full | 67,324 | 67,254 | SCEB01000398.1 Acipenser ruthenus isolate WHYD16114868_AA scaffold1157, whole genome shotgun sequence | Acipenser ruthenus (sterlet) |
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122 | SCEB01215902.1 | 86.20 | full | 500,961 | 501,031 | SCEB01215902.1 Acipenser ruthenus isolate WHYD16114868_AA scaffold391, whole genome shotgun sequence | Acipenser ruthenus (sterlet) |
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123 | VULC01019773.1 | 86.20 | full | 2,119 | 2,189 | VULC01019773.1 Eudyptula minor isolate Gonzo 94793, whole genome shotgun sequence | Eudyptula minor (little blue penguin) |
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124 | VULL01003077.1 | 86.20 | full | 251,085 | 251,155 | VULL01003077.1 Eudyptes chrysocome isolate RH 110-1 scaffold_595, whole genome shotgun sequence | Eudyptes chrysocome (Rockhopper penguin) |
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125 | VULM01003922.1 | 86.20 | full | 2,100 | 2,170 | VULM01003922.1 Aptenodytes patagonicus isolate KP FORT 001 52677, whole genome shotgun sequence | Aptenodytes patagonicus (king penguin) |
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126 | VWPO01000166.1 | 86.20 | full | 464,940 | 464,870 | VWPO01000166.1 Glareola pratincola voucher LSUMZ:Ornithology:B62518 isolate B10K-CU-031-08 scaffold_164, whole genome shotgun sequence | Glareola pratincola |
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127 | VWPP01000923.1 | 86.20 | full | 86,610 | 86,540 | VWPP01000923.1 Cochlearius cochlearius voucher LSUMZ:Ornithology:B18469 isolate B10K-CU-031-03 scaffold_917, whole genome shotgun sequence | Cochlearius cochlearius |
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128 | VWPU01015665.1 | 86.20 | full | 2,141 | 2,211 | VWPU01015665.1 Callaeas wilsoni voucher OTA:GO-YM212792 isolate B10K-OTA-212792 scaffold13950, whole genome shotgun sequence | Callaeas wilsoni (north island kokako) |
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129 | VWPV01018811.1 | 86.20 | full | 6,512 | 6,582 | VWPV01018811.1 Geococcyx californianus voucher LSUMZ:Ornithology:B58226 isolate B10K-CU-031-07 scaffold14450, whole genome shotgun sequence | Geococcyx californianus |
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130 | VWYD01018658.1 | 86.20 | full | 168,246 | 168,176 | VWYD01018658.1 Catharus fuscescens voucher USNM:587444 isolate B10K-DU-001-17 scaffold4243, whole genome shotgun sequence | Catharus fuscescens |
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131 | VWYE01005342.1 | 86.20 | full | 708,283 | 708,353 | VWYE01005342.1 Alaudala cheleensis voucher USNM:586677 isolate B10K-DU-001-15 scaffold1442, whole genome shotgun sequence | Calandrella cheleensis |
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132 | VWYF01018373.1 | 86.20 | full | 201,352 | 201,422 | VWYF01018373.1 Quiscalus mexicanus voucher USNM:608021 isolate B10K-DU-001-31 scaffold12723, whole genome shotgun sequence | Quiscalus mexicanus |
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133 | VWYG01008754.1 | 86.20 | full | 50,297 | 50,227 | VWYG01008754.1 Nyctibius grandis voucher USNM:623085 isolate B10K-DU-001-56 scaffold6975, whole genome shotgun sequence | Nyctibius grandis |
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134 | VWYI01026209.1 | 86.20 | full | 60,225 | 60,155 | VWYI01026209.1 Anthoscopus minutus voucher USNM:642205 isolate B10K-DU-011-42 scaffold12392, whole genome shotgun sequence | Anthoscopus minutus |
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135 | VWYJ01009657.1 | 86.20 | full | 210,490 | 210,560 | VWYJ01009657.1 Sagittarius serpentarius voucher USNM:587866 isolate B10K-DU-011-38 scaffold686, whole genome shotgun sequence | Sagittarius serpentarius |
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136 | VWYM01026814.1 | 86.20 | full | 22,078 | 22,148 | VWYM01026814.1 Cinclus mexicanus voucher USNM:630613 isolate B10K-DU-001-77 scaffold887, whole genome shotgun sequence | Cinclus mexicanus |
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137 | VWYN01025169.1 | 86.20 | full | 1,439,099 | 1,439,169 | VWYN01025169.1 Hippolais icterina voucher USNM:637402 isolate B10K-DU-002-18 scaffold1004, whole genome shotgun sequence | Hippolais icterina (icterine warbler) |
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138 | VWYP01016871.1 | 86.20 | full | 19,944 | 20,014 | VWYP01016871.1 Pycnonotus jocosus voucher USNM:643381 isolate B10K-DU-002-42 scaffold720, whole genome shotgun sequence | Pycnonotus jocosus |
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139 | VWYW01000290.1 | 86.20 | full | 576,850 | 576,920 | VWYW01000290.1 Smithornis capensis voucher C:138652 isolate B10K-CU-031-20 scaffold_282, whole genome shotgun sequence | Smithornis capensis |
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140 | VWYX01000005.1 | 86.20 | full | 220,723 | 220,793 | VWYX01000005.1 Chaetorhynchus papuensis voucher C:163925 isolate B10K-CU-031-19 scaffold_4, whole genome shotgun sequence | Chaetorhynchus papuensis (pygmy drongo) |
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141 | VWYY01000009.1 | 86.20 | full | 4,775,528 | 4,775,458 | VWYY01000009.1 Ptilorrhoa leucosticta voucher C:138661 isolate B10K-CU-031-17 scaffold_7, whole genome shotgun sequence | Ptilorrhoa leucosticta |
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142 | VWYZ01000015.1 | 86.20 | full | 4,496,706 | 4,496,776 | VWYZ01000015.1 Rhodinocichla rosea voucher LSUMZ:Ornithology:B26906 isolate B10K-CU-031-12 scaffold_11, whole genome shotgun sequence | Rhodinocichla rosea |
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143 | VWZA01001707.1 | 86.20 | full | 86,489 | 86,419 | VWZA01001707.1 Oceanites oceanicus voucher LSUMZ:Ornithology:B46846 isolate B10K-CU-031-11 scaffold_1690, whole genome shotgun sequence | Oceanites oceanicus |
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144 | VWZC01012312.1 | 86.20 | full | 289,331 | 289,401 | VWZC01012312.1 Ciccaba nigrolineata voucher USNM:562545 isolate B10K-DU-001-07 scaffold2353, whole genome shotgun sequence | Ciccaba nigrolineata |
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145 | VWZD01012547.1 | 86.20 | full | 74,568 | 74,498 | VWZD01012547.1 Sakesphorus luctuosus voucher USNM:562277 isolate B10K-DU-001-06 scaffold1117, whole genome shotgun sequence | Sakesphorus luctuosus |
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146 | VWZE01019319.1 | 86.20 | full | 1,342,477 | 1,342,407 | VWZE01019319.1 Eubucco bourcierii voucher USNM:542831 isolate B10K-DU-001-04 scaffold1053, whole genome shotgun sequence | Eubucco bourcierii (red-headed barbet) |
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147 | VWZF01006750.1 | 86.20 | full | 1,462,482 | 1,462,552 | VWZF01006750.1 Sclerurus mexicanus voucher USNM:541572 isolate B10K-DU-001-03 scaffold19, whole genome shotgun sequence | Sclerurus mexicanus (tawny-throated leaftosser) |
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148 | VWZG01009712.1 | 86.20 | full | 1,031,787 | 1,031,717 | VWZG01009712.1 Grallaria varia voucher USNM:541382 isolate B10K-DU-001-02 scaffold1283, whole genome shotgun sequence | Grallaria varia (variegated antpitta) |
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149 | VWZH01000344.1 | 86.20 | full | 5,799 | 5,869 | VWZH01000344.1 Dromaius novaehollandiae voucher LSUMZ:Ornithology:B23963 isolate B10K-LSUMZ-23963 scaffold_338, whole genome shotgun sequence | Dromaius novaehollandiae (emu) |
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150 | VWZI01019794.1 | 86.20 | full | 107,733 | 107,803 | VWZI01019794.1 Psilopogon haemacephalus voucher USNM:607367 isolate B10K-DU-001-24 scaffold5786, whole genome shotgun sequence | Psilopogon haemacephalus |
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151 | VWZJ01011157.1 | 86.20 | full | 477,479 | 477,549 | VWZJ01011157.1 Hemiprocne comata voucher USNM:607338 isolate B10K-DU-001-23 scaffold919, whole genome shotgun sequence | Hemiprocne comata |
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152 | VWZK01010569.1 | 86.20 | full | 483,566 | 483,496 | VWZK01010569.1 Baryphthengus martii voucher USNM:606819 isolate B10K-DU-001-21 scaffold137, whole genome shotgun sequence | Baryphthengus martii |
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153 | VWZM01010157.1 | 86.20 | full | 357,359 | 357,289 | VWZM01010157.1 Loxia leucoptera voucher USNM:601821 isolate B10K-DU-001-19 scaffold216, whole genome shotgun sequence | Loxia leucoptera |
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154 | VWZN01013223.1 | 86.20 | full | 77,781 | 77,711 | VWZN01013223.1 Regulus satrapa voucher USNM:601552 isolate B10K-DU-001-18 scaffold1900, whole genome shotgun sequence | Regulus satrapa (golden-crowned kinglet) |
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155 | VWZP01001429.1 | 86.20 | full | 70,557 | 70,487 | VWZP01001429.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 scaffold1049, whole genome shotgun sequence | Dicaeum eximium |
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156 | VWZQ01000104.1 | 86.20 | full | 530,148 | 530,218 | VWZQ01000104.1 Myiagra hebetior voucher USNM:608684 isolate B10K-DU-001-33 scaffold910, whole genome shotgun sequence | Myiagra hebetior |
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157 | VWZR01017914.1 | 86.20 | full | 129,985 | 130,055 | VWZR01017914.1 Oceanodroma tethys voucher USNM:608101 isolate B10K-DU-001-32 scaffold4339, whole genome shotgun sequence | Oceanodroma tethys |
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158 | VWZS01004048.1 | 86.20 | full | 1,852,135 | 1,852,065 | VWZS01004048.1 Rhabdornis inornatus voucher USNM:607544 isolate B10K-DU-001-29 scaffold1147, whole genome shotgun sequence | Rhabdornis inornatus |
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159 | VWZT01006490.1 | 86.20 | full | 4,641 | 4,711 | VWZT01006490.1 Pachycephala philippinensis voucher USNM:607512 isolate B10K-DU-001-28 scaffold1360, whole genome shotgun sequence | Pachycephala philippinensis |
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160 | VWZV01015104.1 | 86.20 | full | 2,187 | 2,257 | VWZV01015104.1 Irena cyanogastra voucher USNM:607434 isolate B10K-DU-001-26 scaffold594, whole genome shotgun sequence | Irena cyanogaster |
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161 | VWZW01002478.1 | 86.20 | full | 816,719 | 816,789 | VWZW01002478.1 Edolisoma coerulescens voucher USNM:607407 isolate B10K-DU-001-25 scaffold417, whole genome shotgun sequence | Edolisoma coerulescens |
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162 | VWZY01003835.1 | 86.20 | full | 171,630 | 171,700 | VWZY01003835.1 Chloroceryle aenea voucher USNM:625133 isolate B10K-DU-001-61 scaffold3096, whole genome shotgun sequence | Chloroceryle aenea |
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163 | VXAA01002838.1 | 86.20 | full | 469,219 | 469,289 | VXAA01002838.1 Anseranas semipalmata voucher USNM:623235 isolate B10K-DU-001-57 scaffold2521, whole genome shotgun sequence | Anseranas semipalmata (magpie goose) |
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164 | VXAC01007110.1 | 86.20 | full | 799,529 | 799,459 | VXAC01007110.1 Rhipidura dahli voucher USNM:616255 isolate B10K-DU-001-49 scaffold233, whole genome shotgun sequence | Rhipidura dahli |
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165 | VXAD01008746.1 | 86.20 | full | 809 | 739 | VXAD01008746.1 Dicrurus megarhynchus voucher USNM:616063 isolate B10K-DU-001-48 scaffold1489, whole genome shotgun sequence | Dicrurus megarhynchus |
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166 | VXAE01011898.1 | 86.20 | full | 1,447 | 1,377 | VXAE01011898.1 Ciconia maguari voucher USNM:614528 isolate B10K-DU-001-47 scaffold6974, whole genome shotgun sequence | Ciconia maguari |
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167 | VXAF01001339.1 | 86.20 | full | 3,542 | 3,612 | VXAF01001339.1 Spizaetus tyrannus voucher USNM:623090 isolate B10K-DU-007-42 scaffold_1189, whole genome shotgun sequence | Spizaetus tyrannus (black hawk-eagle) |
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168 | VXAH01000090.1 | 86.20 | full | 628,115 | 628,185 | VXAH01000090.1 Piprites chloris voucher USNM:625579 isolate B10K-DU-007-02 scaffold_48, whole genome shotgun sequence | Piprites chloris (white-winged piprites) |
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169 | VXAI01000266.1 | 86.20 | full | 504,892 | 504,962 | VXAI01000266.1 Rostratula benghalensis voucher USNM:613014 isolate B10K-DU-006-20 scaffold_255, whole genome shotgun sequence | Rostratula benghalensis (greater painted-snipe) |
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170 | VXAJ01000232.1 | 86.20 | full | 89,791 | 89,721 | VXAJ01000232.1 Herpetotheres cachinnans voucher USNM:612262 isolate B10K-DU-005-78 scaffold_227, whole genome shotgun sequence | Herpetotheres cachinnans |
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171 | VXAK01028483.1 | 86.20 | full | 87,095 | 87,025 | VXAK01028483.1 Arenaria interpres voucher USNM:607650 isolate B10K-DU-005-73 scaffold6269, whole genome shotgun sequence | Arenaria interpres (ruddy turnstone) |
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172 | VXAL01017803.1 | 86.20 | full | 70,281 | 70,211 | VXAL01017803.1 Chauna torquata voucher USNM:614546 isolate B10K-DU-011-36 scaffold918, whole genome shotgun sequence | Chauna torquata (southern screamer) |
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173 | VXAM01000489.1 | 86.20 | full | 480,470 | 480,540 | VXAM01000489.1 Corythaixoides concolor voucher USNM:642466 isolate B10K-DU-011-20 scaffold_307, whole genome shotgun sequence | Corythaixoides concolor (grey go-away-bird) |
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174 | VXAN01000139.1 | 86.20 | full | 1,448,945 | 1,449,015 | VXAN01000139.1 Sylvietta virens voucher USNM:642858 isolate B10K-DU-009-59 scaffold_121, whole genome shotgun sequence | Sylvietta virens (green crombec) |
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175 | VXAP01000151.1 | 86.20 | full | 679,504 | 679,434 | VXAP01000151.1 Glaucidium brasilianum voucher USNM:632722 isolate B10K-DU-008-63 scaffold_126, whole genome shotgun sequence | Glaucidium brasilianum (ferruginous pygmy-owl) |
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176 | VXAQ01000599.1 | 86.20 | full | 499,754 | 499,684 | VXAQ01000599.1 Chordeiles acutipennis voucher USNM:632837 isolate B10K-DU-008-62 scaffold_525, whole genome shotgun sequence | Chordeiles acutipennis (lesser nighthawk) |
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177 | VXAR01008435.1 | 86.20 | full | 119,286 | 119,356 | VXAR01008435.1 Amazona guildingii voucher USNM:613763 isolate B10K-DU-001-46 scaffold255, whole genome shotgun sequence | Amazona guildingii |
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178 | VXAS01002931.1 | 86.20 | full | 31,995 | 32,065 | VXAS01002931.1 Setophaga kirtlandii voucher USNM:613582 isolate B10K-DU-001-45 scaffold61, whole genome shotgun sequence | Dendroica kirtlandii (Kirtland's warbler) |
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179 | VXAT01003757.1 | 86.20 | full | 56,035 | 56,105 | VXAT01003757.1 Mesembrinibis cayennensis voucher USNM:613351 isolate B10K-DU-001-44 scaffold15028, whole genome shotgun sequence | Mesembrinibis cayennensis |
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180 | VXAV01011606.1 | 86.20 | full | 64,766 | 64,696 | VXAV01011606.1 Alectura lathami voucher USNM:612658 isolate B10K-DU-001-39 scaffold925, whole genome shotgun sequence | Alectura lathami (australian brush-turkey) |
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181 | VXAX01005860.1 | 86.20 | full | 1,296,461 | 1,296,531 | VXAX01005860.1 Leptocoma aspasia voucher USNM:608697 isolate B10K-DU-001-35 scaffold408, whole genome shotgun sequence | Leptocoma aspasia |
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182 | VXAY01004283.1 | 86.20 | full | 138,256 | 138,326 | VXAY01004283.1 Oxyruncus cristatus voucher USNM:632342 isolate B10K-DU-002-07 scaffold25, whole genome shotgun sequence | Oxyruncus cristatus (sharpbill) |
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183 | VXAZ01009496.1 | 86.20 | full | 995 | 925 | VXAZ01009496.1 Gymnorhina tibicen voucher USNM:632142 isolate B10K-DU-002-05 scaffold412, whole genome shotgun sequence | Cracticus tibicen (Australian magpie) |
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184 | VXBA01000164.1 | 86.20 | full | 728,027 | 728,097 | VXBA01000164.1 Serilophus lunatus voucher USNM:631797 isolate B10K-DU-002-03 scaffold452, whole genome shotgun sequence | Serilophus lunatus (silver-breasted broadbill) |
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185 | VXBB01009065.1 | 86.20 | full | 957 | 887 | VXBB01009065.1 Illadopsis cleaveri voucher USNM:631543 isolate B10K-DU-002-01 scaffold27359, whole genome shotgun sequence | Illadopsis cleaveri (blackcap illadopsis) |
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186 | VXBC01010658.1 | 86.20 | full | 807,750 | 807,680 | VXBC01010658.1 Ploceus nigricollis voucher USNM:630899 isolate B10K-DU-001-79 scaffold158, whole genome shotgun sequence | Ploceus nigricollis |
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187 | VXBC01010658.1 | 86.20 | full | 808,026 | 807,956 | VXBC01010658.1 Ploceus nigricollis voucher USNM:630899 isolate B10K-DU-001-79 scaffold158, whole genome shotgun sequence | Ploceus nigricollis |
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188 | VXBE01005278.1 | 86.20 | full | 258,473 | 258,403 | VXBE01005278.1 Motacilla alba voucher USNM:627656 isolate B10K-DU-001-75 scaffold996, whole genome shotgun sequence | Motacilla alba |
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189 | VXBF01002308.1 | 86.20 | full | 218,114 | 218,184 | VXBF01002308.1 Oenanthe oenanthe voucher USNM:627655 isolate B10K-DU-001-74 scaffold2108, whole genome shotgun sequence | Oenanthe oenanthe (Northern wheatear) |
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190 | VXBG01006878.1 | 86.20 | full | 1,437,532 | 1,437,602 | VXBG01006878.1 Sylvia borin voucher USNM:637419 isolate B10K-DU-002-19 scaffold93, whole genome shotgun sequence | Sylvia borin |
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191 | VXBH01001909.1 | 86.20 | full | 371,785 | 371,855 | VXBH01001909.1 Rynchops niger voucher USNM:637251 isolate B10K-DU-002-16 scaffold1570, whole genome shotgun sequence | Rynchops niger (black skimmer) |
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192 | VXBI01008338.1 | 86.20 | full | 595,219 | 595,289 | VXBI01008338.1 Toxostoma redivivum voucher USNM:636895 isolate B10K-DU-002-15 scaffold630, whole genome shotgun sequence | Toxostoma redivivum |
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193 | VXBJ01003089.1 | 86.20 | full | 1,534,564 | 1,534,634 | VXBJ01003089.1 Nycticryphes semicollaris voucher USNM:635776 isolate B10K-DU-002-14 scaffold63, whole genome shotgun sequence | Nycticryphes semicollaris |
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194 | VXBK01002079.1 | 86.20 | full | 1,026,481 | 1,026,411 | VXBK01002079.1 Himantopus himantopus voucher USNM:635762 isolate B10K-DU-002-13 scaffold1079, whole genome shotgun sequence | Himantopus himantopus (black-winged stilt) |
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195 | VXBN01014233.1 | 86.20 | full | 669,509 | 669,439 | VXBN01014233.1 Sinosuthora webbiana voucher USNM:633249 isolate B10K-DU-002-08 scaffold1996, whole genome shotgun sequence | Paradoxornis webbianus |
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196 | VXBO01001764.1 | 86.20 | full | 89,322 | 89,252 | VXBO01001764.1 Rhinoptilus africanus voucher USNM:642451 isolate B10K-DU-002-36 scaffold132, whole genome shotgun sequence | Rhinoptilus africanus (double-banded courser) |
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197 | VXBP01010623.1 | 86.20 | full | 445,615 | 445,685 | VXBP01010623.1 Rhinopomastus cyanomelas voucher USNM:642342 isolate B10K-DU-002-35 scaffold150, whole genome shotgun sequence | Rhinopomastus cyanomelas (common scimitar-bill) |
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198 | VXBQ01012438.1 | 86.20 | full | 76,276 | 76,206 | VXBQ01012438.1 Phainopepla nitens voucher USNM:642003 isolate B10K-DU-002-32 scaffold1707, whole genome shotgun sequence | Phainopepla nitens |
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199 | VXBR01012265.1 | 86.20 | full | 644,759 | 644,689 | VXBR01012265.1 Cisticola juncidis voucher USNM:641819 isolate B10K-DU-002-30 scaffold1996, whole genome shotgun sequence | Cisticola juncidis |
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200 | VXBT01006877.1 | 86.20 | full | 640,733 | 640,663 | VXBT01006877.1 Oriolus oriolus voucher USNM:639700 isolate B10K-DU-002-24 scaffold744, whole genome shotgun sequence | Oriolus oriolus |
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201 | VXBU01015306.1 | 86.20 | full | 653,617 | 653,547 | VXBU01015306.1 Bombycilla garrulus voucher USNM:638986 isolate B10K-DU-002-23 scaffold158, whole genome shotgun sequence | Bombycilla garrulus |
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202 | VXBV01007364.1 | 86.20 | full | 1,454,074 | 1,454,144 | VXBV01007364.1 Certhia brachydactyla voucher USNM:637436 isolate B10K-DU-002-20 scaffold322, whole genome shotgun sequence | Certhia brachydactyla |
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203 | VXBW01004775.1 | 86.20 | full | 80,985 | 80,915 | VXBW01004775.1 Thinocorus orbignyianus voucher USNM:645613 isolate B10K-DU-002-47 scaffold2996, whole genome shotgun sequence | Thinocorus orbignyianus |
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204 | VXBX01008488.1 | 86.20 | full | 269,751 | 269,821 | VXBX01008488.1 Scytalopus superciliaris voucher USNM:645480 isolate B10K-DU-002-46 scaffold2824, whole genome shotgun sequence | Scytalopus superciliaris |
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205 | VXBY01000995.1 | 86.20 | full | 33,746 | 33,676 | VXBY01000995.1 Leiothrix lutea voucher USNM:643454 isolate B10K-DU-002-43 scaffold_987, whole genome shotgun sequence | Leiothrix lutea (red-billed leiothrix) |
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206 | VXBZ01001508.1 | 86.20 | full | 58,285 | 58,215 | VXBZ01001508.1 Heliornis fulica voucher USNM:623068 isolate B10K-DU-001-55 scaffold4580, whole genome shotgun sequence | Heliornis fulica (sungrebe) |
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207 | VYXB01008607.1 | 86.20 | full | 136,344 | 136,414 | VYXB01008607.1 Pachyramphus minor voucher USNM:627125 isolate B10K-DU-001-72 scaffold1138, whole genome shotgun sequence | Pachyramphus minor |
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208 | VYXC01001372.1 | 86.20 | full | 2,657,528 | 2,657,458 | VYXC01001372.1 Platysteira castanea voucher USNM:627032 isolate B10K-DU-001-71 scaffold923, whole genome shotgun sequence | Platysteira castanea |
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209 | VYXD01005462.1 | 86.20 | full | 307,655 | 307,725 | VYXD01005462.1 Hylia prasina voucher USNM:627009 isolate B10K-DU-001-70 scaffold681, whole genome shotgun sequence | Hylia prasina (green hylia) |
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210 | VYXE01004683.1 | 86.20 | full | 493 | 423 | VYXE01004683.1 Cardinalis cardinalis voucher USNM:626494 isolate B10K-DU-001-69 scaffold3592, whole genome shotgun sequence | Cardinalis cardinalis |
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211 | VYXE01011812.1 | 86.20 | full | 625 | 555 | VYXE01011812.1 Cardinalis cardinalis voucher USNM:626494 isolate B10K-DU-001-69 scaffold11986, whole genome shotgun sequence | Cardinalis cardinalis |
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212 | VYXF01000842.1 | 86.20 | full | 3,487 | 3,557 | VYXF01000842.1 Polioptila caerulea voucher USNM:626438 isolate B10K-DU-001-66 scaffold1066, whole genome shotgun sequence | Polioptila caerulea |
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213 | VYXG01001570.1 | 86.20 | full | 645,457 | 645,527 | VYXG01001570.1 Lanius ludovicianus voucher USNM:626352 isolate B10K-DU-001-65 scaffold1905, whole genome shotgun sequence | Lanius ludovicianus |
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214 | VYXH01006281.1 | 86.20 | full | 115,385 | 115,455 | VYXH01006281.1 Burhinus bistriatus voucher USNM:626233 isolate B10K-DU-001-64 scaffold215, whole genome shotgun sequence | Burhinus bistriatus |
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215 | VYZC01000579.1 | 86.20 | full | 278,317 | 278,387 | VYZC01000579.1 Mionectes macconnelli voucher USNM:639118 isolate B10K-DU-003-16 scaffold_573, whole genome shotgun sequence | Mionectes macconnelli (McConnell's flycatcher) |
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216 | VYZD01000349.1 | 86.20 | full | 259,267 | 259,337 | VYZD01000349.1 Furnarius figulus voucher USNM:562254 isolate B10K-DU-003-06 scaffold_282, whole genome shotgun sequence | Furnarius figulus |
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217 | VYZE01000218.1 | 86.20 | full | 284,353 | 284,423 | VYZE01000218.1 Pterocles burchelli voucher USNM:642190 isolate B10K-DU-027-49 scaffold_217, whole genome shotgun sequence | Pterocles burchelli |
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218 | VYZH01000857.1 | 86.20 | full | 101,842 | 101,912 | VYZH01000857.1 Probosciger aterrimus voucher USNM:615002 isolate B10K-DU-017-47 scaffold_841, whole genome shotgun sequence | Probosciger aterrimus |
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219 | VYZI01000308.1 | 86.20 | full | 652,118 | 652,048 | VYZI01000308.1 Centropus unirufus voucher USNM:607318 isolate B10K-DU-017-25 scaffold_304, whole genome shotgun sequence | Centropus unirufus |
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220 | VYZL01003599.1 | 86.20 | full | 1,566,063 | 1,565,993 | VYZL01003599.1 Bucorvus abyssinicus isolate B10K-DU-012-80 scaffold350, whole genome shotgun sequence | Bucorvus abyssinicus |
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221 | VYZM01009483.1 | 86.20 | full | 29,476 | 29,406 | VYZM01009483.1 Dromas ardeola voucher USNM:647762 isolate B10K-DU-012-55 scaffold4885, whole genome shotgun sequence | Dromas ardeola |
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222 | VYZP01052489.1 | 86.20 | full | 1,107 | 1,037 | VYZP01052489.1 Hypocryptadius cinnamomeus voucher FMNH:AVES:357649 isolate B10K-DU-002-83 scaffold3908, whole genome shotgun sequence | Hypocryptadius cinnamomeus |
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223 | VYZQ01044907.1 | 86.20 | full | 76,031 | 75,961 | VYZQ01044907.1 Mystacornis crossleyi voucher FMNH:AVES:345860 isolate B10K-DU-002-82 scaffold2883, whole genome shotgun sequence | Mystacornis crossleyi |
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224 | VYZR01051810.1 | 86.20 | full | 3,044 | 3,114 | VYZR01051810.1 Oxylabes madagascariensis voucher FMNH:AVES:352915 isolate B10K-DU-002-81 scaffold10492, whole genome shotgun sequence | Oxylabes madagascariensis |
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225 | VYZS01005403.1 | 86.20 | full | 56,991 | 56,921 | VYZS01005403.1 Neodrepanis coruscans voucher FMNH:AVES:345711 isolate B10K-DU-002-79 scaffold1063, whole genome shotgun sequence | Neodrepanis coruscans (wattled asity) |
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226 | VYZT01034624.1 | 86.20 | full | 65,030 | 65,100 | VYZT01034624.1 Pomatostomus ruficeps voucher LSUMZ:Ornithology:B23408 isolate B10K-DU-002-71 scaffold11041, whole genome shotgun sequence | Pomatostomus ruficeps (chestnut-crowned babbler) |
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227 | VYZV01043719.1 | 86.20 | full | 88,651 | 88,581 | VYZV01043719.1 Pandion haliaetus voucher CAS:90221 isolate B10K-DU-012-58 scaffold3655, whole genome shotgun sequence | Pandion haliaetus |
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228 | VYZX01032133.1 | 86.20 | full | 148,359 | 148,429 | VYZX01032133.1 Brachypteracias leptosomus voucher FMNH:AVES:345686 isolate B10K-DU-012-52 scaffold2735, whole genome shotgun sequence | Brachypteracias leptosomus (short-legged ground-roller) |
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229 | VZRD01000171.1 | 86.20 | full | 1,465,684 | 1,465,754 | VZRD01000171.1 Tachuris rubrigastra voucher LSUMZ:Ornithology:B48222 isolate B10K-CU-031-13 scaffold_167, whole genome shotgun sequence | Tachuris rubrigastra |
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230 | VZRE01011463.1 | 86.20 | full | 83,071 | 83,001 | VZRE01011463.1 Cephalopterus ornatus voucher USNM:541336 isolate B10K-DU-001-01 scaffold6479, whole genome shotgun sequence | Cephalopterus ornatus (amazonian umbrellabird) |
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231 | VZRG01000391.1 | 86.20 | full | 86,994 | 86,924 | VZRG01000391.1 Erythrocercus mccallii voucher LSUMZ:Ornithology:B45295 isolate B10K-DU-002-60 scaffold_388, whole genome shotgun sequence | Erythrocercus mccallii |
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232 | VZRH01005110.1 | 86.20 | full | 729,086 | 729,016 | VZRH01005110.1 Urocynchramus pylzowi voucher IZCAS:653 isolate B10K-DU-012-38 scaffold236, whole genome shotgun sequence | Urocynchramus pylzowi |
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233 | VZRI01010188.1 | 86.20 | full | 52,234 | 52,164 | VZRI01010188.1 Upupa epops voucher IZCAS:18810 isolate B10K-DU-012-37 scaffold5356, whole genome shotgun sequence | Upupa epops (Eurasian hoopoe) |
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234 | VZRJ01002433.1 | 86.20 | full | 79,766 | 79,696 | VZRJ01002433.1 Ptilonorhynchus violaceus voucher UMD:RWG isolate B10K-DU-012-10 scaffold686, whole genome shotgun sequence | Ptilonorhynchus violaceus (satin bowerbird) |
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235 | VZRL01003361.1 | 86.20 | full | 432,288 | 432,218 | VZRL01003361.1 Origma solitaria voucher MVMA:3525 isolate B10K-DU-029-52 scaffold1160, whole genome shotgun sequence | Origma solitaria |
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236 | VZRM01003194.1 | 86.20 | full | 947,772 | 947,702 | VZRM01003194.1 Grantiella picta voucher MVMA:2672 isolate B10K-DU-029-50 scaffold702, whole genome shotgun sequence | Grantiella picta |
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237 | VZRO01007465.1 | 86.20 | full | 59,541 | 59,471 | VZRO01007465.1 Daphoenositta chrysoptera voucher MVMA:1309 isolate B10K-DU-029-47 scaffold582, whole genome shotgun sequence | Daphoenositta chrysoptera (varied sittella) |
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238 | VZRP01019397.1 | 86.20 | full | 10,884 | 10,814 | VZRP01019397.1 Malurus elegans voucher MVMA:0215 isolate B10K-DU-029-44 scaffold1400, whole genome shotgun sequence | Malurus elegans (Red-winged fairywren) |
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239 | VZRQ01005055.1 | 86.20 | full | 1,086,461 | 1,086,531 | VZRQ01005055.1 Machaerirhynchus nigripectus isolate B10K-DU-029-43 scaffold719, whole genome shotgun sequence | Machaerirhynchus nigripectus |
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240 | VZRR01004497.1 | 86.20 | full | 1,466,708 | 1,466,778 | VZRR01004497.1 Oreocharis arfaki isolate B10K-DU-029-42 scaffold113, whole genome shotgun sequence | Oreocharis arfaki |
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241 | VZRS01012767.1 | 86.20 | full | 78,936 | 78,866 | VZRS01012767.1 Ifrita kowaldi isolate B10K-DU-029-41 scaffold773, whole genome shotgun sequence | Ifrita kowaldi (blue-capped ifrita) |
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242 | VZRU01001350.1 | 86.20 | full | 1,829 | 1,899 | VZRU01001350.1 Pedionomus torquatus voucher MVMA:2319 isolate B10K-DU-029-80 scaffold6560, whole genome shotgun sequence | Pedionomus torquatus (plains-wanderer) |
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243 | VZRV01001536.1 | 86.20 | full | 356,101 | 356,031 | VZRV01001536.1 Falcunculus frontatus voucher MVMA:020 isolate B10K-DU-029-77 scaffold191, whole genome shotgun sequence | Falcunculus frontatus (crested shrike-tit) |
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244 | VZRX01023645.1 | 86.20 | full | 1,536 | 1,606 | VZRX01023645.1 Notiomystis cincta isolate B10K-DU-029-75 scaffold13837, whole genome shotgun sequence | Notiomystis cincta |
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245 | VZRY01001942.1 | 86.20 | full | 730,400 | 730,470 | VZRY01001942.1 Rhynochetos jubatus isolate B10K-DU-029-58 scaffold52, whole genome shotgun sequence | Rhynochetos jubatus (kagu) |
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246 | VZRZ01000057.1 | 86.20 | full | 152,438 | 152,368 | VZRZ01000057.1 Climacteris rufus voucher MVMA:354 isolate B10K-DU-029-53 scaffold514, whole genome shotgun sequence | Climacteris rufa (rufous treecreeper) |
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247 | VZSA02001849.1 | 86.20 | full | 3,439 | 3,509 | VZSA02001849.1 Melospiza melodia voucher UBC:243185379 isolate OUT-0008 Contig1848_pilon, whole genome shotgun sequence | Melospiza melodia (song sparrow) |
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248 | VZSB01001739.1 | 86.20 | full | 35,759,413 | 35,759,343 | VZSB01001739.1 Caloenas nicobarica isolate OUT-0007 ScfYJcd_5, whole genome shotgun sequence | Caloenas nicobarica |
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249 | VZSC01007510.1 | 86.20 | full | 186,825 | 186,755 | VZSC01007510.1 Steatornis caripensis voucher MPEG:T17221 isolate OUT-0004 scaffold412, whole genome shotgun sequence | Steatornis caripensis (oilbird) |
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250 | VZSD01004189.1 | 86.20 | full | 4,082 | 4,152 | VZSD01004189.1 Alca torda voucher C:Vinge78 isolate OUT-0003 scaffold673, whole genome shotgun sequence | Alca torda |
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251 | VZSE01007093.1 | 86.20 | full | 830 | 760 | VZSE01007093.1 Promerops cafer isolate B10K-UC-030-53 scaffold4435, whole genome shotgun sequence | Promerops cafer (Cape sugarbird) |
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252 | VZSF01000138.1 | 86.20 | full | 668,493 | 668,563 | VZSF01000138.1 Chionis minor isolate B10K-UC-030-51 scaffold912, whole genome shotgun sequence | Chionis minor (black-faced sheathbill) |
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253 | VZSI01000011.1 | 86.20 | full | 4,889,856 | 4,889,926 | VZSI01000011.1 Aphelocoma coerulescens voucher CUMV:Bird:1713-13619 isolate OUT-0022 scaffold_7, whole genome shotgun sequence | Aphelocoma coerulescens (scrub jay) |
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254 | VZSJ01000944.1 | 86.20 | full | 466,101 | 466,171 | VZSJ01000944.1 Pheucticus melanocephalus isolate OUT-0018 scaffold5891, whole genome shotgun sequence | Pheucticus melanocephalus |
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255 | VZSM01004914.1 | 86.20 | full | 1,543,750 | 1,543,680 | VZSM01004914.1 Loxia curvirostra voucher UWYMV:Bird:2860 isolate OUT-0011 scaffold218, whole genome shotgun sequence | Loxia curvirostra |
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256 | VZSO01000045.1 | 86.20 | full | 6,546,454 | 6,546,524 | VZSO01000045.1 Asarcornis scutulata voucher ECUH:510 isolate OUT-0051 scaffold464, whole genome shotgun sequence | Asarcornis scutulata |
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257 | VZSR01001685.1 | 86.20 | full | 21,904,522 | 21,904,592 | VZSR01001685.1 Brachypodius atriceps voucher LSUMZ:Ornithology:B50336 isolate OUT-0037 Sct0y12_1685, whole genome shotgun sequence | Pycnonotus atriceps |
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258 | VZSS01000001.1 | 86.20 | full | 29,992,960 | 29,992,890 | VZSS01000001.1 Poecile atricapillus voucher CUMV:Bird:55912 isolate OUT-0023 scaffold_0_1, whole genome shotgun sequence | Poecile atricapilla (Black-capped chickadee) |
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259 | VZST01000315.1 | 86.20 | full | 333,362 | 333,432 | VZST01000315.1 Acrocephalus arundinaceus voucher personal:Bengt Hansson:3553254(H9-23) isolate OUT-0054 scaffold_321, whole genome shotgun sequence | Acrocephalus arundinaceus (great reed warbler) |
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260 | VZSU01000322.1 | 86.20 | full | 2,137,812 | 2,137,742 | VZSU01000322.1 Nesospiza acunhae isolate OUT-0053 scaffold241, whole genome shotgun sequence | Nesospiza acunhae |
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261 | VZSW01000074.1 | 86.20 | full | 34,192 | 34,122 | VZSW01000074.1 Pomatorhinus ruficollis voucher IZCAS:20397 isolate B10K-IZ-033-81 scaffold_72, whole genome shotgun sequence | Pomatorhinus ruficollis |
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262 | VZSY01000914.1 | 86.20 | full | 187,250 | 187,180 | VZSY01000914.1 Sapayoa aenigma voucher LSUMZ:Ornithology:B2333 isolate B10K-DU-030-41 scaffold_851, whole genome shotgun sequence | Sapayoa aenigma (broad-billed sapayoa) |
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263 | VZSZ01012247.1 | 86.20 | full | 1,277 | 1,207 | VZSZ01012247.1 Ibidorhyncha struthersii voucher IZCAS:2150 isolate B10K-DU-030-25 scaffold7662, whole genome shotgun sequence | Ibidorhyncha struthersii |
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264 | VZTA01024605.1 | 86.20 | full | 191,841 | 191,771 | VZTA01024605.1 Mohoua ochrocephala voucher OTA:MR-006 isolate B10K-DU-030-22 scaffold2072, whole genome shotgun sequence | Mohoua ochrocephala |
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265 | VZTB01000167.1 | 86.20 | full | 824,898 | 824,968 | VZTB01000167.1 Thryothorus ludovicianus voucher USNM:626484 isolate B10K-DU-001-68 scaffold567, whole genome shotgun sequence | Thryothorus ludovicianus |
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266 | VZTC01003251.1 | 86.20 | full | 2,074 | 2,144 | VZTC01003251.1 Leucopsar rothschildi voucher USNM:631788 isolate B10K-DU-002-02 scaffold1547, whole genome shotgun sequence | Leucopsar rothschildi |
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267 | VZTD01003429.1 | 86.20 | full | 2,340 | 2,410 | VZTD01003429.1 Rhagologus leucostigma isolate B10K-DU-029-40 scaffold1177, whole genome shotgun sequence | Rhagologus leucostigma |
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268 | VZTE01005058.1 | 86.20 | full | 386,247 | 386,177 | VZTE01005058.1 Eulacestoma nigropectus isolate B10K-DU-029-39 scaffold1460, whole genome shotgun sequence | Eulacestoma nigropectus (wattled ploughbill) |
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269 | VZTF01007007.1 | 86.20 | full | 663,820 | 663,890 | VZTF01007007.1 Cnemophilus loriae isolate B10K-DU-029-38 scaffold581, whole genome shotgun sequence | Cnemophilus loriae (Loria's bird-of-paradise) |
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270 | VZTH01018409.1 | 86.20 | full | 141,814 | 141,884 | VZTH01018409.1 Aleadryas rufinucha isolate B10K-DU-029-36 scaffold565, whole genome shotgun sequence | Aleadryas rufinucha (rufous-naped whistler) |
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271 | VZTI01000605.1 | 86.20 | full | 79,627 | 79,557 | VZTI01000605.1 Struthidea cinerea isolate B10K-DU-029-33 scaffold150, whole genome shotgun sequence | Struthidea cinerea |
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272 | VZTJ01003881.1 | 86.20 | full | 643,477 | 643,407 | VZTJ01003881.1 Orthonyx spaldingii isolate B10K-DU-029-32 scaffold919, whole genome shotgun sequence | Orthonyx spaldingii (northern chowchilla) |
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273 | VZTK01005861.1 | 86.20 | full | 244,263 | 244,333 | VZTK01005861.1 Podargus strigoides voucher USNM:612703 isolate B10K-DU-001-40 scaffold1311, whole genome shotgun sequence | Podargus strigoides (tawny frogmouth) |
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274 | VZTM01022104.1 | 86.20 | full | 88,189 | 88,119 | VZTM01022104.1 Jacana jacana voucher LSUMZ:Ornithology:B51411 isolate B10K-DU-002-59 scaffold9294, whole genome shotgun sequence | Jacana jacana (wattled jacana) |
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275 | VZTO01018446.1 | 86.20 | full | 35,215 | 35,145 | VZTO01018446.1 Syrrhaptes paradoxus voucher USNM:586725 isolate B10K-DU-003-42 scaffold3122, whole genome shotgun sequence | Syrrhaptes paradoxus (Pallas's sandgrouse) |
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276 | VZTP01028859.1 | 86.20 | full | 2,601 | 2,671 | VZTP01028859.1 Prunella fulvescens voucher UWBM:57993 isolate B10K-DU-012-46 scaffold14382, whole genome shotgun sequence | Prunella fulvescens |
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277 | VZTQ01003771.1 | 86.20 | full | 90,166 | 90,236 | VZTQ01003771.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold1307, whole genome shotgun sequence | Pelecanoides urinatrix |
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278 | VZTT01069644.1 | 86.20 | full | 31,417 | 31,347 | VZTT01069644.1 Buphagus erythrorhynchus voucher KANU:26688 isolate B10K-DU-012-02 scaffold3850, whole genome shotgun sequence | Buphagus erythrorhynchus (red-billed oxpecker) |
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279 | VZTV01068643.1 | 86.20 | full | 1,912 | 1,982 | VZTV01068643.1 Anhinga rufa voucher USNM:642540 isolate B10K-DU-029-28 scaffold26925, whole genome shotgun sequence | Anhinga rufa (African darter) |
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280 | VZTW01006307.1 | 86.20 | full | 37,108 | 37,038 | VZTW01006307.1 Thalassarche chlororhynchos voucher USNM:635731 isolate B10K-DU-029-24 scaffold2192, whole genome shotgun sequence | Thalassarche chlororhynchos |
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281 | VZTX01020681.1 | 86.20 | full | 77,232 | 77,162 | VZTX01020681.1 Pardalotus punctatus voucher MVMA:289 isolate B10K-DU-029-51 scaffold211, whole genome shotgun sequence | Pardalotus punctatus (spotted pardalote) |
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282 | VZTZ01012523.1 | 86.20 | full | 1,430,426 | 1,430,496 | VZTZ01012523.1 Drymodes brunneopygia voucher MVMA:2664_1 isolate B10K-DU-030-03 scaffold898, whole genome shotgun sequence | Drymodes brunneopygia |
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283 | VZUA01080346.1 | 86.20 | full | 217 | 287 | VZUA01080346.1 Horornis vulcanius voucher LSUMZ:Ornithology:B52647 isolate B10K-DU-029-69 scaffold19384, whole genome shotgun sequence | Horornis vulcanius |
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284 | VZUB01002871.1 | 86.20 | full | 142,280 | 142,350 | VZUB01002871.1 Oreotrochilus melanogaster voucher MSB:Bird:31543 isolate OUT-0002 sisbioavesBR.scaffold5462, whole genome shotgun sequence | Oreotrochilus melanogaster |
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285 | VZUC01000016.1 | 86.20 | full | 663,590 | 663,520 | VZUC01000016.1 Rissa tridactyla isolate OUT-0021 scaffold33_cov42, whole genome shotgun sequence | Rissa tridactyla (black-legged kittiwake) |
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286 | VZUD01000265.1 | 86.20 | full | 3,101,336 | 3,101,406 | VZUD01000265.1 Cepphus grylle isolate OUT-0020 scaffold1904_cov51, whole genome shotgun sequence | Cepphus grylle |
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287 | VZUF01040823.1 | 86.20 | full | 601 | 531 | VZUF01040823.1 Molothrus ater voucher MSB:Bird:39518 isolate OUT-0049 scf7180003501603, whole genome shotgun sequence | Molothrus ater |
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288 | VZUF01142780.1 | 86.20 | full | 1,383,203 | 1,383,133 | VZUF01142780.1 Molothrus ater voucher MSB:Bird:39518 isolate OUT-0049 scf7180003603682, whole genome shotgun sequence | Molothrus ater |
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289 | VZUG01002199.1 | 86.20 | full | 41,086 | 41,016 | VZUG01002199.1 Calonectris borealis voucher personal:Jacob:6119913 isolate OUT-0025 scaffold4383, whole genome shotgun sequence | Calonectris borealis (cory's shearwater) |
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290 | VZUH01004879.1 | 86.20 | full | 97,761 | 97,831 | VZUH01004879.1 Xiphorhynchus elegans voucher MPEG:75162 isolate OUT-0059 scaffold_6538, whole genome shotgun sequence | Xiphorhynchus elegans (elegant woodcreeper) |
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291 | VZZT01001494.1 | 86.20 | full | 86,173 | 86,103 | VZZT01001494.1 Fregetta grallaria voucher USNM:615151 isolate B10K-DU-006-09 scaffold_1473, whole genome shotgun sequence | Fregetta grallaria |
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292 | VZZU01000870.1 | 86.20 | full | 232,867 | 232,797 | VZZU01000870.1 Nyctiprogne leucopyga voucher USNM:572514 isolate B10K-DU-005-01 scaffold_852, whole genome shotgun sequence | Nyctiprogne leucopyga |
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293 | VZZV01000399.1 | 86.20 | full | 236,744 | 236,674 | VZZV01000399.1 Circaetus pectoralis voucher USNM:642474 isolate B10K-DU-010-60 scaffold_374, whole genome shotgun sequence | Circaetus pectoralis |
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294 | VZZX01007313.1 | 86.20 | full | 364,222 | 364,292 | VZZX01007313.1 Hirundo rustica voucher USNM:626475 isolate B10K-DU-001-67 scaffold207, whole genome shotgun sequence | Hirundo rustica (Barn swallow) |
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295 | VZZY01024434.1 | 86.20 | full | 60,943 | 60,873 | VZZY01024434.1 Eurystomus gularis voucher LSUMZ:Ornithology:B39360 isolate B10K-DU-002-51 scaffold1565, whole genome shotgun sequence | Eurystomus gularis |
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296 | WAAC01000439.1 | 86.20 | full | 51,977 | 51,907 | WAAC01000439.1 Larus smithsonianus voucher USNM:641377 isolate B10K-DU-002-28 scaffold513, whole genome shotgun sequence | Larus smithsonianus |
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297 | WAAD01006541.1 | 86.20 | full | 103,736 | 103,806 | WAAD01006541.1 Fregata magnificens voucher LSUMZ:Ornithology:B24538 isolate B10K-DU-002-48 scaffold386, whole genome shotgun sequence | Fregata magnificens |
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298 | WAAD01006541.1 | 86.20 | full | 105,901 | 105,971 | WAAD01006541.1 Fregata magnificens voucher LSUMZ:Ornithology:B24538 isolate B10K-DU-002-48 scaffold386, whole genome shotgun sequence | Fregata magnificens |
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299 | WAAE01020026.1 | 86.20 | full | 32,326 | 32,396 | WAAE01020026.1 Nicator chloris voucher USNM:642941 isolate B10K-DU-002-40 scaffold487, whole genome shotgun sequence | Nicator chloris |
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300 | WAAF01007717.1 | 86.20 | full | 73,738 | 73,808 | WAAF01007717.1 Tricholaema leucomelas voucher USNM:642560 isolate B10K-DU-002-37 scaffold2143, whole genome shotgun sequence | Tricholaema leucomelas (pied barbet) |
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Note: this table contains only the first 300 sequences.
Alignment
There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...
View options
You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.
Formatting options
You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".
Download
Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.
Submit a new alignment
We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.
Secondary structure
This section shows a variety of different secondary structure representations for this family. More...
You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.
Current Rfam structure
5 out of 23 basepairs are significant at E-value=0.05
R-scape optimised structure
5 out of 30 basepairs are significant at E-value=0.05
- Colours
- Statistically significant basepair with covariation
- 97% conserved nucleotide
- 90% conserved nucleotide
- 75% conserved nucleotide
- 50% conserved nucleotide
- Nucleotides
- R: A or G
- Y: C or U
Tip: The diagrams are interactive:
you can pan and zoom to see more details
or hover over nucleotides and basepairs.
R-scape is a method for testing whether covariation analysis supports the presence of a conserved RNA secondary structure. This page shows R-scape analysis of the secondary structure from the Rfam seed alignment and a new structure with covariation support that is compatible with the same alignment.
To find out more about the method, see the R-scape paper by Rivas et al., 2016. The structures are visualised using R2R.
Species distribution
Sunburst controls
HideLineage
Move your mouse over the main tree to show the lineage of a particular node.
You can move this pane by dragging it.
Weight segments by...
Change the size of the sunburst
Colour assignments
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Selections
Click on a node to select that node and its sub-tree.
Clear selection
This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...
Tree controls
HideThe tree shows the occurrence of this RNA across different species. More...
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Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.
Trees
This page displays the predicted phylogenetic tree for the alignment. More...
Note: You can also download the data file for the seed tree.
Motif matches
There are 1 motifs which match this family.
This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...
Original order | Motif Accession | Motif Description | Number of Hits | Fraction of Hits | Sum of Bits | Image |
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7 | RM00008 | GNRA tetraloop | 4 | 0.071 | 34.3 |
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References
This section shows the database cross-references that we have for this Rfam family.
Literature references
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Lai EC, Tomancak P, Williams RW, Rubin GM Genome Biol 2003;4:R42. Computational identification of Drosophila microRNA genes. PUBMED:12844358
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Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP; Genes Dev. 2003;17:991-1008. The microRNAs of Caenorhabditis elegans. PUBMED:12672692
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Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol 2002;12:735-739. Identification of tissue-specific microRNAs from mouse. PUBMED:12007417
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Kozomara A, Birgaoanu M, Griffiths-Jones S Nucleic Acids Res. 2019;47:D155. miRBase: from microRNA sequences to function. PUBMED:30423142
External database links
Gene Ontology: | GO:0035195 (miRNA-mediated post-transcriptional gene silencing); GO:0016442 (RISC complex); |
Sequence Ontology: | SO:0001244 (pre_miRNA); |
MIPF: | MIPF0000021 |
External sites: | 1: http://www.mirbase.org |
Curation and family details
This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.
Curation
Seed source | Griffiths-Jones SR | ||||||
Structure source | Predicted; PFOLD | ||||||
Type | Gene; miRNA; | ||||||
Author |
Griffiths-Jones SR |
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Alignment details |
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Model information
Build commands |
cmbuild -F CM SEED
cmcalibrate --mpi CM
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Search command |
cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
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Gathering cutoff | 49.0 |
Trusted cutoff | 49.0 |
Noise cutoff | 48.7 |
Covariance model | Download |