INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-petD ACC RF04336 DESC Plastid-petD group II-D5 intron STATES 145 NODES 35 CLEN 47 W 61 ALPH RNA RF no CONS yes MAP yes DATE Tue Sep 9 16:47:34 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/NC_045098.1/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 200 EFFN 3.555298 CKSUM 2074784918 NULL 0.000 0.000 0.000 0.000 GA 65.50 TC 65.50 NC 65.40 EFP7GF -11.9139 0.71958 ECMLC 0.65418 -6.78160 3.11764 1600000 779117 0.001540 ECMGC 0.46803 -16.77518 -2.12625 1600000 379903 0.001053 ECMLI 0.62624 -5.72092 3.74497 1600000 450455 0.002664 ECMGI 0.50743 -12.76926 0.00756 1600000 261657 0.001529 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 61 80 -7.496 -7.703 -0.597 -1.606 IL 1 1 2 1 4 1 5 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 4 61 80 -7.968 -0.021 -6.622 -1.492 -1.487 -2.226 1.620 D 4 2 3 5 3 0 0 60 79 -8.479 -0.836 -1.194 IL 5 5 3 5 3 1 3 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 4 60 79 -8.307 -0.016 -6.961 -1.861 -1.634 -2.610 1.695 D 7 5 3 8 3 0 0 59 78 -7.487 -0.759 -1.309 IL 8 8 3 8 3 1 2 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 3 59 78 -8.443 -0.015 -7.097 -0.707 1.114 -1.777 -0.102 D 10 8 3 11 3 0 0 58 77 -6.582 -1.058 -0.974 IL 11 11 3 11 3 1 2 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 3 58 77 -8.479 -0.014 -7.133 -0.981 -1.237 -1.031 1.367 D 13 11 3 14 3 0 0 57 76 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 1 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 3 57 75 -8.479 -0.014 -7.133 -2.019 -1.646 -2.769 1.717 D 16 14 3 17 3 0 0 56 75 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 2 55 74 -8.479 -0.014 -7.133 -1.431 -3.156 1.745 -2.596 D 19 17 3 20 3 0 0 55 73 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 2 54 73 -8.479 -0.014 -7.133 -2.750 1.800 -3.568 -1.817 D 22 20 3 23 3 0 0 53 72 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 2 53 72 -8.479 -0.014 -7.133 -2.166 -1.877 -2.920 1.754 D 25 23 3 26 3 0 0 52 71 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 1 52 71 -8.841 -0.249 -2.679 -1.627 1.547 -2.617 -0.760 D 28 26 3 29 3 0 0 51 70 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 47 - C - - MR 30 29 3 32 3 1 1 51 70 -8.608 -0.016 -6.926 -1.527 1.447 -2.380 -0.444 D 31 29 3 32 3 0 0 50 69 -7.845 -0.726 -1.355 IR 32 32 3 32 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 46 - U - - MR 33 32 3 35 3 1 1 50 69 -8.788 -0.014 -7.106 -1.305 -1.279 -2.050 1.557 D 34 32 3 35 3 0 0 49 68 -6.897 -1.063 -0.963 IR 35 35 3 35 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 45 - U - - MR 36 35 3 38 3 1 1 49 68 -8.831 -0.013 -7.149 -1.109 -0.967 -1.690 1.441 D 37 35 3 38 3 0 0 48 66 -6.498 -1.376 -0.728 IR 38 38 3 38 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 44 - c - - MR 39 38 3 41 5 1 1 48 67 -7.552 -0.028 -7.367 -7.580 -8.471 -1.015 0.882 -1.767 0.453 D 40 38 3 41 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 1 49 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 43 G C - - MP 42 41 3 46 6 2 2 47 66 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -5.732 -3.580 -6.000 -0.500 -6.604 -5.060 -1.724 -6.260 -4.916 3.807 -5.196 -1.335 -2.088 -5.099 -3.827 -4.863 ML 43 41 3 46 6 1 1 46 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 1 46 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 47 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 42 A U - - MP 48 47 6 52 6 2 2 45 64 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -4.784 -3.606 -4.676 3.724 -5.586 -6.785 -1.219 -4.650 -4.591 -0.004 -5.184 -0.956 -1.625 -5.765 -3.153 -3.496 ML 49 47 6 52 6 1 1 44 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 44 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 45 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 41 G U - - MP 54 53 6 58 6 2 2 43 62 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -4.192 -2.834 -4.397 0.704 -5.759 -6.189 -1.220 -4.435 -3.978 1.491 -4.527 3.332 -1.431 -5.224 -3.151 -3.033 ML 55 53 6 58 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 40 C G - - MP 60 59 6 64 6 2 2 41 60 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -5.474 -5.504 -5.059 -1.653 -2.676 -5.377 3.749 -4.551 -5.156 -1.496 -5.318 -3.512 -0.034 -5.496 -1.395 -3.972 ML 61 59 6 64 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 39 C G - - MP 66 65 6 70 6 2 2 39 58 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -5.092 -5.120 -4.677 -1.261 -3.240 -5.003 3.638 -4.102 -4.738 -1.100 -4.954 -3.128 0.516 -5.091 -0.640 -3.547 ML 67 65 6 70 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 38 G C - - MP 72 71 6 76 6 2 2 37 56 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -5.732 -3.580 -6.000 -0.500 -6.604 -5.060 -1.724 -6.260 -4.916 3.807 -5.196 -1.335 -2.088 -5.099 -3.827 -4.863 ML 73 71 6 76 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 34 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 37 G C - - MP 78 77 6 82 4 2 2 35 54 -7.374 -8.620 -0.056 -5.073 -5.732 -3.580 -6.000 -0.500 -6.604 -5.060 -1.724 -6.260 -4.916 3.807 -5.196 -1.335 -2.088 -5.099 -3.827 -4.863 ML 79 77 6 82 4 1 1 35 53 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 34 53 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 32 51 -12.737 -14.007 -2.036 -0.404 IL 82 82 5 82 4 1 1 35 53 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 36 - U - - MR 84 83 6 86 3 1 1 33 52 -8.841 -0.013 -7.159 -2.465 -2.298 -3.234 1.811 D 85 83 6 86 3 0 0 32 50 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 35 - G - - MR 87 86 3 89 5 1 1 32 51 -7.552 -0.028 -7.367 -7.580 -8.471 -1.429 -3.155 1.744 -2.595 D 88 86 3 89 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 34 A U - - MP 90 89 3 94 6 2 2 31 50 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -4.734 -2.395 -4.614 3.718 -5.802 -6.666 -1.499 -4.673 -4.612 0.105 -5.211 -0.994 -1.724 -5.587 -3.386 -3.497 ML 91 89 3 94 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 33 U A - - MP 96 95 6 100 6 2 2 29 48 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -5.430 -5.400 -5.119 -1.614 -3.800 -5.530 0.540 -4.598 -5.136 -1.453 -5.441 -3.384 3.692 -5.474 -1.079 -3.778 ML 97 95 6 100 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 32 G C - - MP 102 101 6 106 6 2 2 27 46 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -5.732 -3.580 -6.000 -0.500 -6.604 -5.060 -1.724 -6.260 -4.916 3.807 -5.196 -1.335 -2.088 -5.099 -3.827 -4.863 ML 103 101 6 106 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 31 A U - - MP 108 107 6 112 6 2 2 25 44 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -4.351 -2.626 -4.308 3.581 -5.120 -5.916 -0.534 -4.430 -4.304 0.537 -4.874 -0.517 -1.101 -4.970 -2.751 -3.204 ML 109 107 6 112 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 30 U A - - MP 114 113 6 118 6 2 2 23 42 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -3.892 -3.866 -3.985 -0.309 -3.416 -4.785 0.844 -3.952 -3.714 -0.027 -4.510 -1.959 3.446 -3.483 -1.003 -2.640 ML 115 113 6 118 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 29 g c - - MP 120 119 6 124 6 2 2 21 40 -9.342 -9.281 -0.018 -8.057 -8.337 -8.732 -2.267 -1.593 -2.555 1.502 -2.628 -2.977 1.098 -2.527 -2.404 1.819 -2.482 1.455 0.786 -2.419 -0.583 -0.649 ML 121 119 6 124 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 28 A U - - MP 126 125 6 130 4 2 2 19 38 -7.496 -7.703 -0.036 -6.117 -4.371 -3.426 -4.186 3.696 -4.657 -5.474 -0.909 -2.384 -4.527 -0.205 -5.069 -1.529 -1.136 -4.717 -2.620 -3.138 ML 127 125 6 130 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - A - - - ML 132 131 6 134 3 1 1 16 34 -8.479 -0.014 -7.133 1.824 -3.075 -2.397 -2.733 D 133 131 6 134 3 0 0 16 34 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - A - - - ML 135 134 3 137 3 1 1 14 33 -8.479 -0.014 -7.133 1.870 -3.404 -2.940 -3.052 D 136 134 3 137 3 0 0 15 33 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 138 137 3 140 3 1 1 13 31 -8.479 -0.014 -7.133 1.870 -3.404 -2.940 -3.052 D 139 137 3 140 3 0 0 13 32 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 141 140 3 143 2 1 1 1 1 * 0.000 1.802 -2.639 -2.529 -2.485 D 142 140 3 143 2 0 0 0 0 * 0.000 IL 143 143 3 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 144 143 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-petD ACC RF04336 DESC Plastid-petD group II-D5 intron LENG 47 MAXL 119 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Sep 9 16:47:34 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/NC_045098.1/CM NSEQ 200 EFFN 4.531860 CKSUM 2074784918 STATS LOCAL MSV -7.0246 0.71958 STATS LOCAL VITERBI -7.7708 0.71958 STATS LOCAL FORWARD -3.9731 0.71958 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43898 1.46709 1.50751 1.16869 1.38629 1.38629 1.38629 1.38629 0.43946 4.39131 1.06935 1.46634 0.26236 0.00000 * 1 2.66808 2.62219 3.18778 0.20247 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03772 3.98957 3.98957 1.46634 0.26236 0.52075 0.90158 2 2.91853 2.68770 3.44062 0.16735 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02870 4.25822 4.25822 1.46634 0.26236 0.38975 1.13081 3 1.96657 0.55499 2.76543 1.50043 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.02580 4.36348 4.36348 1.46634 0.26236 0.48359 0.95859 4 2.22040 2.38032 2.14745 0.38253 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 5 3.02305 2.67200 3.54302 0.15864 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 6 2.50954 3.81576 0.14567 3.43474 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 7 3.61735 0.10352 4.15682 2.88548 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 8 3.13844 2.86256 3.66245 0.13484 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 9 2.70453 0.26309 3.42867 2.02501 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 10 3.12602 4.02258 0.08420 3.96594 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 11 0.12814 3.82312 2.60893 3.69713 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 12 2.29852 3.72870 0.16948 3.45878 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 13 3.94310 0.11887 3.78977 2.65800 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 14 3.60445 0.19929 3.43299 2.11036 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 15 3.12816 4.02585 0.08394 3.97035 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 16 3.12760 4.02499 0.08401 3.96919 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 17 0.11929 4.05675 2.61464 3.81910 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 18 4.01088 2.65007 3.86424 0.11624 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 19 3.12849 4.02636 0.08390 3.97104 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 20 0.19084 3.33197 2.24918 3.42578 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 21 3.04413 2.37034 2.77079 0.22778 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 22 1.49346 1.86054 0.85226 1.64316 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 23 0.11619 3.47795 2.98806 3.55989 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 24 0.09384 3.78413 3.24378 3.58186 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 25 0.06529 4.05720 3.71210 3.84061 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 26 0.06529 4.05720 3.71210 3.84061 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 27 0.10751 3.39604 3.37412 3.37605 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 28 3.81407 3.25311 3.58898 0.09249 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 29 1.99938 1.37776 1.66983 0.85765 29 u - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 30 0.25889 2.91074 2.17803 2.80683 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 31 3.63579 2.58189 3.18154 0.15492 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 32 4.13047 0.10124 3.89152 2.81680 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 33 0.13915 4.04363 2.41315 3.77927 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 34 4.05763 2.85618 3.88116 0.10027 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 35 2.50776 3.81452 0.14592 3.43358 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 36 3.39931 3.23809 3.93840 0.09664 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 37 4.11314 0.10197 3.88264 2.81363 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 38 4.11603 0.10184 3.88412 2.81416 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 39 2.41875 3.58788 0.16387 3.36798 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 40 2.81922 3.94726 0.10858 3.73268 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 41 3.64748 1.79890 3.50892 0.25034 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 42 3.92580 2.99493 3.63731 0.10102 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 43 4.15940 0.10007 3.90617 2.82199 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.02508 4.39131 4.39131 1.46634 0.26236 1.09861 0.40547 44 2.23368 0.71849 2.75446 1.07373 44 c - - : 1.38629 1.38629 1.38629 1.38629 0.03308 4.39131 3.90420 1.46634 0.26236 1.09861 0.40547 45 2.31075 2.14568 2.68289 0.33483 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.06122 4.38351 3.05976 1.46634 0.26236 1.28858 0.32250 46 2.46406 2.40508 2.98533 0.25602 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.17813 4.34849 1.89551 1.46634 0.26236 1.85397 0.17033 47 2.67083 0.32119 3.27694 1.78513 47 C - - : 1.38629 1.38629 1.38629 1.38629 0.61947 0.77269 * 0.06463 2.77121 0.00000 * //