INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-379 ACC RF04292 DESC mir-379 microRNA precursor family STATES 196 NODES 45 CLEN 64 W 86 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 22:09:58 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.3/miRNA_relabelled/batch2/searches/MIPF0000126__mir-379_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 60 EFFN 3.731689 CKSUM 682119181 NULL 0.000 0.000 0.000 0.000 GA 56.00 TC 56.10 NC 55.90 EFP7GF -12.0384 0.71919 ECMLC 0.66662 -5.46572 3.08645 1600000 359016 0.003342 ECMGC 0.49018 -15.10129 -3.22020 1600000 135316 0.002956 ECMLI 0.65463 -4.03869 4.00394 1600000 232121 0.005170 ECMGI 0.53859 -10.44946 -0.36869 1600000 91208 0.004386 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 114 -7.544 -7.751 -0.254 -2.724 IL 1 1 2 1 4 1 13 89 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 88 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 12 86 114 -8.323 -0.016 -6.977 0.926 -1.098 -0.641 -0.012 D 4 2 3 5 3 0 7 85 113 -7.651 -0.948 -1.069 IL 5 5 3 5 3 1 11 87 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 11 85 113 -8.818 -0.125 -3.635 -0.065 -1.477 0.972 -0.468 D 7 5 3 8 3 0 6 83 112 -6.102 -1.216 -0.850 IL 8 8 3 8 3 1 11 86 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 67 - U - - MR 9 8 3 11 3 1 13 84 112 -8.708 -0.015 -7.025 -2.199 -2.075 -2.960 1.772 D 10 8 3 11 3 0 5 82 110 -7.648 -2.826 -0.228 IR 11 11 3 11 3 1 11 85 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 66 - C - - MR 12 11 3 14 5 1 13 83 111 -7.426 -0.031 -7.241 -7.453 -8.345 -2.656 1.800 -3.480 -1.894 D 13 11 3 14 5 0 4 82 110 -6.184 -0.633 -3.810 -3.474 -2.473 IR 14 14 3 14 5 1 9 83 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 65 a u - - MP 15 14 3 19 6 2 13 82 111 -9.337 -9.276 -0.018 -8.053 -8.332 -8.727 -3.539 1.561 -3.637 2.524 -4.228 -4.751 -0.139 -3.917 -3.589 1.930 -4.108 -0.255 -0.353 -3.928 -1.950 -2.556 ML 16 14 3 19 6 1 6 81 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 6 80 109 -7.155 -5.884 -1.793 -5.862 -0.711 -4.076 0.148 0.120 -0.528 0.153 D 18 14 3 19 6 0 2 78 106 -9.324 -8.022 -3.819 -4.501 -2.203 -0.594 IL 19 19 5 19 6 1 8 82 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 81 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 64 G C - - MP 21 20 6 25 6 2 13 80 109 -9.337 -9.276 -0.018 -8.053 -8.332 -8.727 -4.514 -3.015 -4.536 0.449 -5.514 -4.919 -0.762 -4.942 -4.349 3.375 -4.721 1.326 -1.023 -4.417 -2.767 -3.405 ML 22 20 6 25 6 1 6 79 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 78 107 -7.328 -6.057 -1.453 -6.035 -0.874 -4.249 0.000 0.180 -0.691 0.319 D 24 20 6 25 6 0 1 76 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 80 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 79 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 63 a u - - MP 27 26 6 31 6 2 12 78 107 -9.351 -9.291 -0.018 -8.067 -8.347 -8.742 1.267 0.327 -2.123 1.329 -2.149 -2.891 1.094 -2.427 -0.691 0.979 -2.621 -0.233 0.944 -2.248 -0.361 -1.327 ML 28 26 6 31 6 1 5 77 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 77 105 -7.161 -5.890 -1.319 -5.868 -1.002 -4.082 0.719 -0.626 -0.336 -0.129 D 30 26 6 31 6 0 1 74 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 78 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 77 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 62 u a - - MP 33 32 6 37 6 2 11 76 105 -9.365 -9.304 -0.025 -6.857 -8.360 -8.755 -1.927 -2.105 -2.111 0.905 -2.002 -2.042 1.433 -1.847 -2.167 0.820 -2.733 -0.681 2.221 -2.254 0.376 -0.004 ML 34 32 6 37 6 1 5 75 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 74 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 72 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 76 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 75 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 61 g u - - MP 39 38 6 43 6 2 9 74 103 -9.358 -9.297 -0.018 -8.074 -8.353 -8.748 -2.001 -0.549 -2.842 1.294 -2.907 -2.313 0.889 -2.602 0.130 0.902 -0.468 2.015 0.389 -2.437 -0.836 -1.544 ML 40 38 6 43 6 1 4 73 101 -6.359 -6.705 -1.163 -1.114 -6.555 -4.084 0.329 -0.562 0.177 -0.095 MR 41 38 6 43 6 1 4 73 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 70 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 74 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 73 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 60 G C - - MP 45 44 6 49 6 2 8 72 101 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -5.817 -3.623 -6.108 -0.563 -6.719 -5.091 -1.818 -6.364 -4.963 3.816 -5.238 -1.383 -2.182 -5.152 -3.928 -4.970 ML 46 44 6 49 6 1 4 71 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 71 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 69 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 72 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 72 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 59 U A - - MP 51 50 6 55 4 2 6 70 99 -7.544 -7.751 -0.035 -6.165 -5.689 -5.532 -5.349 -1.756 -4.025 -5.771 0.307 -4.807 -5.345 -1.661 -5.645 -3.395 3.748 -5.760 -1.667 -3.946 ML 52 50 6 55 4 1 3 70 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 69 98 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 68 96 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 4 71 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 4 70 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - u - - - ML 57 56 6 59 3 1 5 68 96 -8.885 -0.013 -7.203 0.380 -0.775 -1.041 0.703 D 58 56 6 59 3 0 0 67 95 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 3 69 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 58 - C - - MR 60 59 3 62 5 1 4 67 95 -7.594 -0.027 -7.409 -7.622 -8.513 -3.084 1.850 -3.884 -2.253 D 61 59 3 62 5 0 0 66 94 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 2 67 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 57 G C - - MP 63 62 3 67 6 2 5 66 94 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -5.817 -3.623 -6.108 -0.563 -6.719 -5.091 -1.818 -6.364 -4.963 3.816 -5.238 -1.383 -2.182 -5.152 -3.928 -4.970 ML 64 62 3 67 6 1 1 65 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 64 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 62 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 66 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 65 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 56 A U - - MP 69 68 6 73 6 2 5 64 92 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.873 -3.682 -4.747 3.744 -5.718 -6.932 -1.346 -4.715 -4.674 -0.103 -5.270 -1.025 -1.750 -5.888 -3.279 -3.572 ML 70 68 6 73 6 1 1 63 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 62 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 60 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 64 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 63 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 55 C G - - MP 75 74 6 79 6 2 5 62 90 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.752 -4.743 -4.413 -0.866 -3.031 -4.803 3.447 -3.848 -4.439 -0.697 -4.718 -2.698 1.369 -4.783 -0.691 -3.249 ML 76 74 6 79 6 1 1 61 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 60 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 58 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 62 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 61 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 54 C G - - MP 81 80 6 85 6 2 4 60 88 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.682 -4.706 -4.354 -0.871 -2.990 -4.745 3.336 -3.804 -4.384 -0.718 -4.669 -2.716 0.561 -4.718 1.337 -3.208 ML 82 80 6 85 6 1 1 59 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 58 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 56 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 60 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 59 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 53 A U - - MP 87 86 6 91 6 2 4 58 87 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -3.966 -2.840 -4.037 3.093 -4.909 -5.377 -0.482 -4.270 -3.928 2.059 -4.465 0.154 -0.710 -4.454 -2.407 -2.846 ML 88 86 6 91 6 1 1 57 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 57 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 55 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 58 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 57 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 52 u a - - MP 93 92 6 97 4 2 2 56 85 -7.544 -7.751 -0.035 -6.165 -3.507 -3.236 -3.522 0.468 -2.863 -4.264 1.642 -3.412 -3.543 1.881 -4.015 -1.117 2.479 -3.670 -0.326 -2.415 ML 94 92 6 97 4 1 1 56 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 55 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 54 82 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 57 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 56 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - - - ML 99 98 6 101 3 1 1 54 82 -8.525 -0.014 -7.179 1.430 -2.126 -0.397 -1.653 D 100 98 6 101 3 0 0 52 81 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 55 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - G - - - ML 102 101 3 104 3 1 1 53 81 -8.525 -0.014 -7.179 -0.681 -1.726 1.239 -0.486 D 103 101 3 104 3 0 0 51 80 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 54 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 105 104 3 107 3 1 1 52 80 -8.885 -0.013 -7.203 1.878 -3.493 -3.021 -3.150 D 106 104 3 107 3 0 0 51 79 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 53 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 51 - c - - MR 108 107 3 110 3 1 1 51 79 -8.885 -0.013 -7.203 -0.431 0.833 -1.675 0.218 D 109 107 3 110 3 0 0 49 78 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 52 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 50 - A - - MR 111 110 3 113 3 1 1 50 78 -8.885 -0.013 -7.203 1.622 -1.846 -1.548 -1.733 D 112 110 3 113 3 0 0 48 77 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 51 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 49 - a - - MR 114 113 3 116 5 1 1 49 77 -7.594 -0.027 -7.409 -7.622 -8.513 0.927 -0.595 -0.294 -0.685 D 115 113 3 116 5 0 0 48 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 49 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 48 a u - - MP 117 116 3 121 6 2 2 48 76 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.109 -2.916 -4.252 2.896 -5.428 -6.141 -1.063 -4.377 -3.974 0.789 -4.574 2.378 -1.226 -5.005 -2.945 -2.969 ML 118 116 3 121 6 1 1 46 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 46 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 43 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 48 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 47 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 47 C G - - MP 123 122 6 127 6 2 2 46 74 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -5.801 -5.812 -5.263 -1.980 -3.765 -5.509 3.806 -4.703 -5.385 -1.865 -5.480 -3.811 -0.415 -5.782 -1.533 -4.194 ML 124 122 6 127 6 1 1 44 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 44 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 41 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 46 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 45 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 46 a u - - MP 129 128 6 133 6 2 2 44 72 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.111 -2.915 -4.255 2.875 -5.436 -6.147 -1.068 -4.379 -3.975 0.787 -4.574 2.410 -1.231 -5.010 -2.951 -2.971 ML 130 128 6 133 6 1 1 42 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 42 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 40 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 44 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 43 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 45 U A - - MP 135 134 6 139 6 2 2 42 70 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -3.857 -3.854 -3.791 -0.284 -2.878 -4.411 1.356 0.643 -3.810 -0.179 -4.227 -1.951 3.094 -4.059 -0.621 -2.748 ML 136 134 6 139 6 1 1 41 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 40 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 38 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 42 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 41 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 44 A U - - MP 141 140 6 145 6 2 2 40 68 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.105 -2.935 -4.238 3.215 -5.369 -6.125 -1.024 -4.368 -3.978 0.787 -4.583 1.736 -1.192 -4.983 -2.904 -2.967 ML 142 140 6 145 6 1 1 39 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 38 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 36 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 40 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 39 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 43 C G - - MP 147 146 6 151 6 2 2 38 66 -9.365 -9.304 -0.018 -8.081 -8.360 -8.755 -4.111 -3.825 -4.008 0.005 -3.010 -4.654 3.118 -3.665 -3.987 1.496 -4.400 -1.604 0.831 -4.261 -0.626 -2.817 ML 148 146 6 151 6 1 1 37 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 37 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 34 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 38 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 37 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 42 G C - - MP 153 152 6 157 4 2 2 36 64 -7.420 -8.666 -0.054 -5.119 -4.876 -3.213 -4.922 0.881 -5.821 -4.952 -1.004 -5.331 -4.572 3.602 -4.903 -0.870 -1.292 -4.606 -3.040 -3.801 ML 154 152 6 157 4 1 1 35 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 35 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 33 62 -12.737 -14.007 -2.036 -0.404 IL 157 157 5 157 4 1 1 35 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 36 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 41 - a - - MR 159 158 6 161 5 1 1 34 62 -7.594 -0.027 -7.409 -7.622 -8.513 0.849 -0.401 -1.274 0.040 D 160 158 6 161 5 0 0 33 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 161 161 3 161 5 1 1 34 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 40 C G - - MP 162 161 3 166 4 2 2 33 61 -7.544 -7.751 -0.035 -6.165 -4.674 -4.699 -4.348 -0.866 -2.988 -4.741 3.318 -3.801 -4.379 -0.713 -4.664 -2.711 0.563 -4.711 1.403 -3.203 ML 163 161 3 166 4 1 1 33 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 3 166 4 1 1 32 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 3 166 4 0 0 31 59 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 34 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 33 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - U - - - ML 168 167 6 170 3 1 1 31 59 -8.525 -0.014 -7.179 -1.015 -1.342 -0.661 1.309 D 169 167 6 170 3 0 0 29 58 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 32 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 171 170 3 173 3 1 1 30 58 -8.525 -0.014 -7.179 -0.186 -0.912 -0.829 1.019 D 172 170 3 173 3 0 0 28 56 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 31 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - U - - - ML 174 173 3 176 3 1 1 29 57 -8.525 -0.014 -7.179 -1.111 -0.776 -1.394 1.363 D 175 173 3 176 3 0 0 27 55 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 30 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - a - - - ML 177 176 3 179 3 1 1 28 56 -8.525 -0.014 -7.179 0.802 -0.355 -0.490 -0.391 D 178 176 3 179 3 0 0 26 54 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 29 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - U - - - ML 180 179 3 182 3 1 1 27 55 -2.864 -0.242 -5.870 -2.552 -2.372 -3.323 1.822 D 181 179 3 182 3 0 0 23 51 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 29 57 -0.940 -1.139 -5.333 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - c - - - ML 183 182 3 185 3 1 1 16 34 -8.510 -0.014 -7.165 -0.922 0.686 -1.838 0.663 D 184 182 3 185 3 0 0 16 34 -6.362 -1.341 -0.754 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - U - - - ML 186 185 3 188 3 1 1 14 33 -8.525 -0.014 -7.179 -0.754 -1.495 -2.069 1.493 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - g - - - ML 189 188 3 191 3 1 1 13 31 -8.525 -0.014 -7.179 0.197 -0.848 0.549 -0.261 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - U - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.678 -1.696 -2.100 1.653 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-379 ACC RF04292 DESC mir-379 microRNA precursor family LENG 64 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 22:09:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.3/miRNA_relabelled/batch2/searches/MIPF0000126__mir-379_relabelled/CM NSEQ 60 EFFN 5.797119 CKSUM 682119181 STATS LOCAL MSV -8.0576 0.71919 STATS LOCAL VITERBI -8.5555 0.71919 STATS LOCAL FORWARD -3.8121 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42484 1.47249 1.41565 1.24712 1.38629 1.38629 1.38629 1.38629 0.18413 4.41765 1.85720 1.46634 0.26236 0.00000 * 1 0.68105 2.30494 1.88282 1.41885 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02859 4.26211 4.26211 1.46634 0.26236 0.55484 0.85370 2 1.49878 2.64672 0.61051 1.81621 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02580 4.36358 4.36358 1.46634 0.26236 1.35924 0.29687 3 0.39018 3.35276 1.41163 3.11612 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.02550 4.37487 4.37487 1.46634 0.26236 1.86741 0.16785 4 2.60222 3.55840 0.14642 3.39281 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02550 4.37487 4.37487 1.46634 0.26236 0.83606 0.56813 5 0.52194 2.36524 1.63594 2.13762 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02493 4.39734 4.39734 1.46634 0.26236 0.55962 0.84730 6 1.91207 1.58945 1.86988 0.70513 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 7 1.50566 2.31450 0.52211 2.45290 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 8 3.31961 4.26539 0.06734 4.20568 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 9 4.39066 3.14644 4.32053 0.07116 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 10 1.09499 2.02392 2.20335 0.86065 10 u - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 11 3.35783 4.32704 0.06372 4.28901 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 12 0.08907 4.22298 2.92762 4.07210 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 13 3.56610 0.28621 3.38275 1.67839 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 14 3.63268 0.35699 3.46712 1.41646 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 15 0.45846 3.53795 1.19828 3.29802 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 16 2.51176 1.68123 1.31725 0.76602 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 17 0.32754 3.27980 1.64830 3.00990 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 18 2.04390 2.86941 0.43288 1.80117 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 19 0.04722 4.37337 4.01034 4.17446 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 20 0.65376 4.00715 0.82909 3.67760 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 21 4.44371 0.06963 4.34409 3.15763 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 22 0.67053 4.00174 0.81003 3.67180 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 23 3.36238 1.38027 3.19597 0.39614 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 24 0.42059 3.97754 1.20839 3.65239 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 25 2.96327 0.45963 1.63105 2.11107 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 26 2.13525 3.71347 0.18687 3.58118 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 27 3.61409 0.37136 3.45665 1.37941 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 28 2.43976 2.62650 1.86846 0.37669 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 29 1.56307 2.15516 2.00210 0.61698 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 30 2.47637 2.03593 2.49484 0.35256 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 31 0.77929 1.61530 1.75032 1.77951 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 32 3.70863 3.50708 4.25302 0.07119 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.20296 1.83009 3.75965 1.04869 0.43140 1.09861 0.40547 33 2.26267 0.82070 2.96723 0.90546 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02470 4.40635 4.40635 1.46634 0.26236 0.71088 0.67572 34 2.04974 2.75746 3.20393 0.26504 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 35 1.26985 2.04397 0.92328 1.64819 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 36 2.94497 2.90079 3.09199 0.16605 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 37 2.62515 3.62764 0.14214 3.39647 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 38 0.73458 1.67663 2.44942 1.39859 41 a - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 39 3.78304 0.21216 3.54140 1.97012 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 40 2.36898 1.69275 0.42183 2.70962 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 41 3.83126 2.61869 3.74516 0.12580 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 42 0.43313 3.37998 1.92320 1.76414 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 43 3.85612 2.62560 3.77041 0.12396 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 44 3.44437 4.51282 0.05890 4.24716 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 45 3.87833 2.62712 3.78255 0.12300 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 46 0.67668 1.81198 1.59082 2.08256 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 47 0.19980 2.84527 2.64645 2.95495 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 48 1.79239 0.70880 2.82237 1.26677 51 c - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 49 0.85950 1.38632 1.49779 2.27293 52 a - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 50 3.50848 1.41638 3.32659 0.36882 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 51 2.62160 3.62150 0.14289 3.38948 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 52 1.82221 3.54319 0.25705 3.32199 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 53 4.29998 3.33639 4.03664 0.06913 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 54 4.45353 0.07706 4.21848 3.04053 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 55 4.13515 0.05781 4.61546 3.49738 58 C - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 56 0.08074 4.52600 2.97599 4.15134 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 57 4.33688 0.08074 4.15621 3.01955 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03545 4.41765 3.78242 1.46634 0.26236 1.09861 0.40547 58 1.82581 1.92708 1.80396 0.63734 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40688 4.40688 1.46634 0.26236 0.72253 0.66460 59 1.02048 1.96020 1.33934 1.44084 62 a - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 60 0.85930 1.44321 2.15327 1.49491 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41765 4.41765 1.46634 0.26236 1.09861 0.40547 61 3.55076 0.37690 3.36513 1.38328 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.04778 4.41765 3.36408 1.46634 0.26236 1.09861 0.40547 62 3.30178 0.80106 3.14393 0.75244 65 u - - > 1.38629 1.38629 1.38629 1.38629 0.14862 4.39486 2.07334 1.46634 0.26236 1.58265 0.22995 63 3.86836 0.07484 4.38712 3.24979 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.02823 4.27447 4.27447 1.46634 0.26236 2.64326 0.07379 64 3.45711 3.28783 3.99726 0.09126 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.01422 4.26045 * 1.46634 0.26236 0.00000 * //