INFERNAL1/a [1.1.5 | Sep 2023] NAME HCV_5BSL1 ACC RF04218 DESC Hepatitis C virus stem-loop I STATES 145 NODES 35 CLEN 47 W 60 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 20:49:50 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/HCV_07.2023/NS5B_5BSL1_rfam_RF04218_rfamprod/RF04218/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 57 EFFN 12.687927 CKSUM 3766428819 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.60 NC 35.30 EFP7GF -16.5224 0.71941 ECMLC 0.71191 -5.75829 3.15831 1600000 685489 0.001751 ECMGC 0.46211 -19.17588 -4.58287 1600000 339458 0.001178 ECMLI 0.68415 -4.79080 3.95690 1600000 476798 0.002517 ECMGI 0.49314 -15.44945 -2.50404 1600000 236902 0.001688 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 60 79 -8.968 -9.175 -0.013 -7.589 IL 1 1 2 1 4 1 3 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 6 61 79 -9.904 -0.005 -8.558 -4.106 1.853 -2.064 -3.452 D 4 2 3 5 3 0 0 60 79 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 2 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 5 59 78 -9.904 -0.005 -8.558 1.921 -4.414 -4.343 -3.084 D 7 5 3 8 3 0 0 59 78 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 2 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 4 58 77 -9.904 -0.005 -8.558 1.580 -0.643 -2.288 -2.597 D 10 8 3 11 3 0 0 58 77 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 1 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 3 57 76 -9.904 -0.005 -8.558 -1.082 -0.699 -1.245 1.316 D 13 11 3 14 3 0 0 57 75 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 1 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 3 56 75 -10.223 -0.005 -8.541 1.299 0.319 -3.154 -2.484 D 16 14 3 17 3 0 0 55 74 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - c - - MR 18 17 3 20 3 1 2 55 74 -10.223 -0.005 -8.541 0.840 0.915 -3.249 -2.195 D 19 17 3 20 3 0 0 54 72 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - G - - MR 21 20 3 23 3 1 2 54 73 -10.223 -0.005 -8.541 -0.496 -1.386 1.292 -1.123 D 22 20 3 23 3 0 0 53 71 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - U - - MR 24 23 3 26 3 1 2 53 72 -10.223 -0.005 -8.541 -4.776 -4.355 -5.593 1.961 D 25 23 3 26 3 0 0 52 70 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 45 - U - - MR 27 26 3 29 5 1 1 52 71 -1.510 -0.636 -8.706 -8.918 -9.810 -3.041 0.377 -3.927 1.330 D 28 26 3 29 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 1 52 71 -4.547 -0.099 -8.058 -6.226 -7.332 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 43 G C - - MP 30 29 3 34 6 2 2 51 70 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -7.357 -4.659 -8.072 -1.837 -8.836 -5.996 -3.539 -8.277 -1.624 3.880 -6.266 -1.351 -3.841 -6.272 -5.782 -6.935 ML 31 29 3 34 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 51 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 42 G C - - MP 36 35 6 40 6 2 2 49 68 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -6.730 0.402 -6.995 -1.404 -7.893 -5.801 -2.766 -7.499 -5.857 3.742 -6.080 -2.230 -3.061 -1.661 -4.902 -5.945 ML 37 35 6 40 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 49 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 41 G C - - MP 42 41 6 46 6 2 2 47 66 -10.222 -10.162 -0.455 -1.912 -9.218 -9.613 -6.998 -4.568 -7.456 -1.607 -8.430 -6.005 -3.252 -7.752 -0.389 3.795 -6.202 -0.530 -3.532 -6.163 -5.427 -6.309 ML 43 41 6 46 6 1 1 46 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 46 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 47 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 40 u g - - MP 48 47 6 52 6 2 2 45 64 -9.781 -9.720 -0.013 -8.496 -8.776 -9.171 -2.781 -2.947 -2.924 0.152 -2.639 -3.724 1.039 -3.106 -2.977 0.095 -3.515 -1.465 1.791 -0.470 2.071 1.033 ML 49 47 6 52 6 1 1 44 63 -9.354 -9.700 -0.104 -4.109 -9.550 -7.079 -3.179 -2.909 -3.961 1.885 MR 50 47 6 52 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 39 G C - - MP 54 53 6 58 6 2 2 43 62 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -5.838 0.572 -5.832 -0.726 -6.822 -0.602 -1.851 -6.462 -5.507 3.558 -5.735 -1.758 -2.131 -1.078 -3.905 -4.807 ML 55 53 6 58 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 38 G C - - MP 60 59 6 64 4 2 2 41 60 -8.968 -9.175 -0.013 -7.589 -7.691 -1.606 -8.784 -2.032 -9.223 -5.990 -3.792 -8.834 -6.096 3.911 -6.315 -2.604 -4.119 -6.357 -6.110 -7.666 ML 61 59 6 64 4 1 1 43 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 42 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 41 60 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - C - - - ML 66 65 6 68 3 1 1 39 57 -9.904 -0.005 -8.558 -3.779 1.739 -1.079 -3.108 D 67 65 6 68 3 0 0 38 57 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - a - - - ML 69 68 3 71 3 1 1 37 56 -9.904 -0.005 -8.558 0.357 -0.659 -0.172 0.261 D 70 68 3 71 3 0 0 37 56 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 72 71 3 74 3 1 1 36 55 -9.904 -0.005 -8.558 -1.507 -3.013 1.510 -0.563 D 73 71 3 74 3 0 0 36 55 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - C - - - ML 75 74 3 77 3 1 1 35 54 -9.904 -0.005 -8.558 -3.298 1.552 -0.296 -2.721 D 76 74 3 77 3 0 0 35 54 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - a - - - ML 78 77 3 80 3 1 1 34 53 -9.904 -0.005 -8.558 0.636 -0.681 -0.115 -0.154 D 79 77 3 80 3 0 0 34 52 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - u - - - ML 81 80 3 83 3 1 1 33 52 -10.223 -0.005 -8.541 0.082 -1.800 -0.072 0.768 D 82 80 3 83 3 0 0 32 50 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 37 - a - - MR 84 83 3 86 5 1 1 32 51 -8.891 -0.011 -8.706 -8.918 -9.810 0.303 -0.124 0.177 -0.479 D 85 83 3 86 5 0 0 31 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 36 g u - - MP 87 86 3 91 6 2 2 31 50 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -2.221 -0.067 -4.226 0.208 -4.294 0.337 0.989 -0.921 -1.833 1.292 -1.611 2.355 -0.470 -2.695 -1.510 -1.347 ML 88 86 3 91 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 35 C G - - MP 93 92 6 97 6 2 2 29 48 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -4.581 -4.449 -1.690 0.471 -3.622 -5.359 3.133 -4.263 -4.523 -0.328 -5.015 -2.247 1.200 -4.788 0.826 -3.353 ML 94 92 6 97 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 34 C G - - MP 99 98 6 103 6 2 2 27 46 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -6.693 -6.893 -6.077 -3.068 0.511 -6.263 3.714 -1.384 -6.168 -2.998 -6.309 -5.128 -1.136 -6.571 -2.168 -4.966 ML 100 98 6 103 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 33 U G - - MP 105 104 6 109 6 2 2 25 44 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -6.732 -6.731 -6.120 -2.987 -4.553 -6.343 -0.263 -5.422 -6.185 -3.044 -6.344 -4.747 -1.274 -6.673 3.837 -5.005 ML 106 104 6 109 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 32 C G - - MP 111 110 6 115 6 2 2 23 42 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -8.449 -8.644 -7.248 -4.924 -5.574 -7.145 3.969 -7.117 -7.930 -4.904 -7.187 -6.938 -2.934 -8.343 -3.916 -6.733 ML 112 110 6 115 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 31 A U - - MP 117 116 6 121 6 2 2 21 40 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -6.792 -2.375 -5.909 3.929 -8.854 -9.900 -4.459 -5.825 -6.559 -2.134 -7.208 -2.720 -4.466 -8.226 -6.283 -5.099 ML 118 116 6 121 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 30 G U - - MP 123 122 6 127 6 2 2 19 38 -10.222 -10.162 -0.010 -8.938 -9.218 -9.613 -5.811 -4.489 -5.983 -0.802 -7.591 -8.925 -3.128 -5.990 -5.559 -1.147 -6.212 3.862 -3.299 -7.251 -5.005 -4.591 ML 124 122 6 127 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 19 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 29 G C - - MP 129 128 6 133 4 2 2 17 36 -8.968 -9.175 -0.013 -7.589 -6.900 1.875 -7.373 -1.566 -8.576 -6.262 -3.494 -7.485 -5.923 3.526 -6.255 -2.319 -3.742 -6.415 -5.645 -6.100 ML 130 128 6 133 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 135 134 6 137 3 1 1 13 32 -9.904 -0.005 -8.558 1.974 -5.719 -5.138 -5.379 D 136 134 6 137 3 0 0 15 33 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - A - - - ML 138 137 3 140 3 1 1 12 30 -9.904 -0.005 -8.558 1.974 -5.719 -5.138 -5.379 D 139 137 3 140 3 0 0 13 32 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - A - - - ML 141 140 3 143 2 1 1 1 1 * 0.000 1.265 -4.085 0.551 -3.796 D 142 140 3 143 2 0 0 0 0 * 0.000 IL 143 143 3 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 144 143 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HCV_5BSL1 ACC RF04218 DESC Hepatitis C virus stem-loop I LENG 47 MAXL 111 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 20:49:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/HCV_07.2023/NS5B_5BSL1_rfam_RF04218_rfamprod/RF04218/CM NSEQ 57 EFFN 16.459167 CKSUM 3766428819 STATS LOCAL MSV -6.9388 0.71941 STATS LOCAL VITERBI -7.7054 0.71941 STATS LOCAL FORWARD -3.7777 0.71941 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57375 1.21904 1.19673 1.63457 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 0.00000 * 1 4.51431 0.09453 2.77263 4.08918 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 2 0.04757 4.70021 4.66730 3.57663 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 3 0.27580 1.80987 3.08313 3.45627 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 4 2.22506 1.89130 2.27595 0.44884 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 5 0.47195 1.12815 3.88430 3.44134 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 6 4.08380 5.18927 0.02862 5.15031 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 7 2.23307 4.91107 0.15424 3.56252 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 8 3.97075 5.07313 0.03238 4.99930 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 9 3.10814 2.44538 3.07467 0.19551 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 10 2.03997 2.84302 0.26849 3.05366 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 11 3.29705 5.06771 0.05141 4.98816 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 12 4.36571 0.17133 2.08239 3.90604 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 13 1.13446 1.86448 1.49327 1.20801 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 14 2.53130 3.69122 0.32349 1.76094 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 15 4.11116 0.29291 1.54987 3.67904 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 16 0.92826 1.87713 1.45252 1.52441 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 17 1.34140 2.80201 1.41940 0.83017 17 u - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 18 2.11869 1.33546 0.63781 2.42673 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 19 2.23307 0.53802 2.93722 1.36304 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 20 4.81751 0.05436 4.72621 3.32538 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 21 4.70042 3.08540 4.61210 0.06692 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 22 5.74809 0.01622 5.77500 4.62539 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 23 0.03309 5.44261 3.80486 5.12310 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 24 3.39519 4.90612 0.05219 4.61331 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 25 1.33796 5.14816 0.32121 5.03007 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 26 0.01340 5.66219 5.24282 5.39322 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 27 0.01340 5.66219 5.24282 5.39322 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 28 0.50103 4.56747 0.99002 4.41103 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 29 5.11493 0.04142 5.01213 3.57889 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 30 4.77589 3.66171 4.67641 0.04440 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 31 5.32606 3.63675 5.25389 0.03711 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 32 4.82397 5.91328 0.01422 5.68895 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 33 3.69657 4.80159 0.04575 4.44827 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 34 2.14309 4.86527 0.17300 3.38542 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 35 1.94839 3.11892 0.33728 2.30679 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 36 2.74139 1.11762 1.87573 0.78698 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 37 1.17465 1.45364 1.24080 1.78258 37 a - - - 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 38 5.24181 0.03352 5.14176 3.82457 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 39 4.49515 0.06502 4.25705 3.28006 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.46573 5.10818 1.00437 1.46634 0.26236 1.09861 0.40547 40 1.41384 2.27576 0.83472 1.51379 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.01908 4.66154 4.66154 1.46634 0.26236 0.03249 3.44315 41 2.86623 0.13235 4.93011 2.81634 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 42 4.91826 0.04402 4.75380 3.60679 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 43 3.61039 0.07495 5.00667 3.25774 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.46573 1.00437 5.10818 0.03270 3.43674 1.09861 0.40547 44 3.81601 1.10951 4.43815 0.45186 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 45 5.05608 4.73280 5.63519 0.01892 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 46 1.75983 2.38044 0.46482 2.23335 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.01217 5.10818 5.10818 1.46634 0.26236 1.09861 0.40547 47 0.78700 0.71700 3.99954 3.26354 48 c - - : 1.38629 1.38629 1.38629 1.38629 0.00610 5.10212 * 1.46634 0.26236 0.00000 * //