INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8364 ACC RF04163 DESC mir-8364 microRNA precursor family STATES 187 NODES 45 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 17:43:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04163/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 3.234131 CKSUM 1955597107 NULL 0.000 0.000 0.000 0.000 GA 67.00 TC 67.00 NC 66.90 EFP7GF -12.6866 0.71929 ECMLC 0.60765 -6.23319 3.66771 1600000 492069 0.002439 ECMGC 0.43593 -17.17072 -3.82183 1600000 134671 0.002970 ECMLI 0.56910 -5.30160 4.72297 1600000 360451 0.003329 ECMGI 0.45317 -13.09424 -1.22534 1600000 86690 0.004614 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 97 -7.287 -8.532 -0.303 -2.473 IL 1 1 2 1 4 1 13 78 98 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 64 - A - - MR 3 2 3 5 3 1 16 77 97 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 4 2 3 5 3 0 9 76 95 -7.750 -0.863 -1.167 IR 5 5 3 5 3 1 14 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - G - - MR 6 5 3 8 5 1 16 76 96 -7.410 -0.031 -7.225 -7.437 -8.329 -2.319 -3.639 1.846 -3.022 D 7 5 3 8 5 0 7 74 94 -5.704 -1.059 -3.330 -4.761 -1.456 IR 8 8 3 8 5 1 13 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 62 U A - - MP 9 8 3 13 6 2 17 75 95 -9.265 -9.204 -0.019 -7.981 -8.261 -8.656 -4.283 -4.307 -4.189 -0.665 -1.045 -4.773 1.098 -3.890 -4.204 -0.523 -4.611 -2.405 3.433 -4.446 -0.889 -3.041 ML 10 8 3 13 6 1 9 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 9 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 5 71 91 -9.575 -8.274 -4.071 -4.753 -1.546 -0.846 IL 13 13 5 13 6 1 11 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 12 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 C G - - MP 15 14 6 19 6 2 16 73 93 -9.265 -9.204 -0.019 -7.981 -8.261 -8.656 -5.344 -5.316 -4.893 -1.495 -3.460 -5.199 3.737 -4.350 -4.980 -1.344 -5.144 -3.286 -0.041 -5.357 -1.197 -3.797 ML 16 14 6 19 6 1 9 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 9 71 91 -7.367 -6.096 -2.004 -6.074 -0.591 -4.287 0.062 -0.821 0.646 -0.277 D 18 14 6 19 6 0 4 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 11 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 11 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 U A - - MP 21 20 6 25 6 2 15 71 91 -9.265 -9.204 -0.019 -7.981 -8.261 -8.656 -4.143 -4.127 -3.995 -0.407 -2.894 -4.538 1.437 -3.624 -4.011 -0.225 -4.387 -2.153 3.162 -4.277 0.828 -2.866 ML 22 20 6 25 6 1 9 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 9 70 89 -7.367 -6.096 -1.058 -6.074 -1.208 -4.287 0.936 -0.804 -0.543 -0.273 D 24 20 6 25 6 0 4 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 10 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 11 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 59 U A - - MP 27 26 6 31 6 2 14 69 89 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -3.910 -3.956 -3.824 -0.353 0.223 -4.411 1.414 -3.544 -3.847 -0.233 -4.253 -2.094 3.164 -4.084 -0.573 -2.757 ML 28 26 6 31 6 1 8 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 7 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 10 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 58 C G - - MP 33 32 6 37 6 2 12 67 87 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -4.720 -4.734 -4.373 -0.895 -2.996 -4.748 3.510 -3.823 -4.413 -0.727 -4.677 -2.736 0.539 -4.748 0.356 -3.233 ML 34 32 6 37 6 1 7 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 6 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 3 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 9 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 9 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 57 A U - - MP 39 38 6 43 6 2 10 65 85 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -4.706 -4.017 -1.959 3.722 -5.071 -5.950 -1.082 -4.545 -4.753 -0.190 -5.297 -1.631 -1.393 -5.162 -2.893 -3.575 ML 40 38 6 43 6 1 7 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 5 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 3 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 8 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 8 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 U A - - MP 45 44 6 49 4 2 8 63 83 -7.403 -7.610 -0.039 -6.024 -5.302 -5.142 -5.009 -1.377 -3.744 -5.467 0.593 -4.506 -5.007 -1.248 -5.324 -3.009 3.678 -5.397 -1.395 -3.683 ML 46 44 6 49 4 1 6 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 3 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 2 62 82 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 7 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 7 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - U - - - ML 51 50 6 53 3 1 7 61 80 -8.391 -0.015 -7.045 -2.298 -2.158 -3.062 1.788 D 52 50 6 53 3 0 2 59 79 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 6 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 54 53 3 56 3 1 6 60 79 -4.723 -0.067 -7.075 -1.206 -0.102 -1.981 1.252 D 55 53 3 56 3 0 1 58 78 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 5 61 80 -1.649 -0.647 -4.550 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - A - - MR 57 56 3 59 3 1 5 58 78 -8.757 -0.014 -7.075 1.287 -0.510 -1.534 -0.963 D 58 56 3 59 3 0 0 57 76 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 4 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 54 - A - - MR 60 59 3 62 5 1 4 57 77 -7.472 -0.030 -7.288 -7.500 -8.391 1.852 -3.232 -2.782 -2.863 D 61 59 3 62 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 53 C G - - MP 63 62 3 67 4 2 4 56 76 -7.403 -7.610 -0.039 -6.024 -3.878 -3.910 -3.776 -0.236 0.844 -4.354 3.025 -3.457 -3.792 -0.106 -4.191 -1.996 1.388 -4.041 -0.451 -2.696 ML 64 62 3 67 4 1 1 57 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 4 1 1 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 3 67 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 2 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 2 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - a - - - ML 69 68 6 71 3 1 2 54 73 -8.757 -0.014 -7.075 0.440 -0.139 -0.016 -0.423 D 70 68 6 71 3 0 0 53 72 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 52 - g - - MR 72 71 3 74 5 1 2 53 72 -7.472 -0.030 -7.288 -7.500 -8.391 -0.507 0.199 0.378 -0.237 D 73 71 3 74 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 51 C G - - MP 75 74 3 79 6 2 3 52 71 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -5.278 -5.307 -4.962 -1.532 -1.250 -5.348 3.724 -4.554 -5.058 -1.386 -5.257 -3.348 -0.197 -5.361 -1.450 -3.908 ML 76 74 3 79 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 50 a u - - MP 81 80 6 85 6 2 3 50 69 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -3.804 -2.695 -3.911 2.573 -4.788 -5.305 -0.449 -4.116 -3.754 1.633 -4.297 2.217 -0.661 -4.379 -2.343 -2.711 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 49 c g - - MP 87 86 6 91 6 2 2 48 67 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -2.060 -2.209 -2.234 0.898 -2.047 -3.073 2.013 -1.259 -2.279 0.859 -2.839 -0.700 1.689 -1.157 0.871 -1.415 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 48 a u - - MP 93 92 6 97 6 2 2 46 65 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -3.209 0.119 -3.290 2.243 -3.772 -4.138 0.270 -3.656 -3.346 2.199 -3.799 1.079 0.046 -3.406 -1.520 -2.290 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 47 C G - - MP 99 98 6 103 6 2 2 44 63 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -5.501 -5.486 -5.020 -1.660 -3.563 -5.305 3.763 -4.469 -5.118 -1.522 -5.259 -3.464 -0.166 -5.503 -1.310 -3.932 ML 100 98 6 103 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 46 U A - - MP 105 104 6 109 4 2 2 42 61 -7.403 -7.610 -0.039 -6.024 -5.302 -5.142 -5.009 -1.377 -3.744 -5.467 0.593 -4.506 -5.007 -1.248 -5.324 -3.009 3.678 -5.397 -1.395 -3.683 ML 106 104 6 109 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 44 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - C - - - ML 111 110 6 113 3 1 1 40 59 -8.757 -0.014 -7.075 -1.245 1.352 -1.068 -0.865 D 112 110 6 113 3 0 0 38 57 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 45 - G - - MR 114 113 3 116 5 1 1 39 58 -7.472 -0.030 -7.288 -7.500 -8.391 -0.412 -0.986 1.054 -0.583 D 115 113 3 116 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 44 U A - - MP 117 116 3 121 6 2 2 38 57 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -1.320 -3.621 -3.713 -0.159 -3.143 -4.482 0.977 -3.681 -3.724 -0.020 -4.226 -1.748 3.348 -3.912 -0.938 -2.667 ML 118 116 3 121 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 43 C G - - MP 123 122 6 127 6 2 2 36 55 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -5.501 -5.486 -5.020 -1.660 -3.563 -5.305 3.763 -4.469 -5.118 -1.522 -5.259 -3.464 -0.166 -5.503 -1.310 -3.932 ML 124 122 6 127 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 42 U A - - MP 129 128 6 133 6 2 2 34 53 -9.298 -9.238 -0.018 -8.014 -8.294 -8.689 -5.302 -5.142 -5.009 -1.377 -3.744 -5.467 0.593 -4.506 -5.007 -1.248 -5.324 -3.009 3.678 -5.397 -1.395 -3.683 ML 130 128 6 133 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 41 C G - - MP 135 134 6 139 4 2 2 32 51 -7.403 -7.610 -0.039 -6.024 -5.501 -5.486 -5.020 -1.660 -3.563 -5.305 3.763 -4.469 -5.118 -1.522 -5.259 -3.464 -0.166 -5.503 -1.310 -3.932 ML 136 134 6 139 4 1 1 32 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 34 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - A - - - ML 141 140 6 143 3 1 1 29 48 -8.391 -0.015 -7.045 1.153 -1.832 0.120 -1.294 D 142 140 6 143 3 0 0 28 47 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - C - - - ML 144 143 3 146 3 1 1 28 47 -8.391 -0.015 -7.045 -1.951 1.598 -2.812 -0.805 D 145 143 3 146 3 0 0 27 46 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - C - - - ML 147 146 3 149 3 1 1 27 46 -8.391 -0.015 -7.045 -2.000 1.617 -2.859 -0.874 D 148 146 3 149 3 0 0 26 45 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - G - - - ML 150 149 3 152 3 1 1 26 45 -8.391 -0.015 -7.045 -0.652 -0.951 1.038 -0.335 D 151 149 3 152 3 0 0 25 44 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - G - - - ML 153 152 3 155 3 1 1 25 43 -3.868 -0.114 -7.045 -0.426 -0.905 1.149 -0.988 D 154 152 3 155 3 0 0 23 42 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 26 44 -1.710 -0.627 -4.410 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - U - - - ML 156 155 3 158 3 1 1 23 42 -8.391 -0.015 -7.045 -1.018 -0.870 -1.303 1.353 D 157 155 3 158 3 0 0 22 41 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - C - - - ML 159 158 3 161 3 1 1 22 41 -8.391 -0.015 -7.045 -2.779 1.816 -3.597 -1.995 D 160 158 3 161 3 0 0 21 40 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 162 161 3 164 3 1 1 21 40 -8.391 -0.015 -7.045 0.923 -0.794 -0.718 -0.121 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - G - - - ML 165 164 3 167 3 1 1 20 38 -8.391 -0.015 -7.045 -0.916 -2.709 1.629 -2.152 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - A - - - ML 168 167 3 170 3 1 1 18 37 -8.391 -0.015 -7.045 1.419 -1.988 -0.470 -1.503 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - g - - - ML 171 170 3 173 3 1 1 17 36 -8.391 -0.015 -7.045 -0.314 -0.685 0.840 -0.353 D 172 170 3 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - a - - - ML 174 173 3 176 3 1 1 16 34 -8.391 -0.015 -7.045 0.787 -0.318 -0.712 -0.216 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - G - - - ML 177 176 3 179 3 1 1 14 33 -8.391 -0.015 -7.045 -0.665 -1.954 1.395 -1.057 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - G - - - ML 180 179 3 182 3 1 1 13 31 -8.391 -0.015 -7.045 -0.389 -0.753 1.076 -0.903 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 40 - C - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.218 1.057 -2.075 0.325 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8364 ACC RF04163 DESC mir-8364 microRNA precursor family LENG 61 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 17:43:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04163/CM NSEQ 13 EFFN 4.446533 CKSUM 1955597107 STATS LOCAL MSV -7.5561 0.71929 STATS LOCAL VITERBI -8.5719 0.71929 STATS LOCAL FORWARD -3.5217 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36383 1.43043 1.32898 1.42558 1.38629 1.38629 1.38629 1.38629 0.08279 4.24787 2.73091 1.46634 0.26236 0.00000 * 1 3.34022 1.95719 3.18662 0.24589 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03058 4.19567 4.19567 1.46634 0.26236 1.88074 0.16544 2 3.88470 0.11749 3.76401 2.70146 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03058 4.19567 4.19567 1.46634 0.26236 1.88074 0.16544 3 3.11319 1.87119 2.92138 0.29070 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03058 4.19567 4.19567 1.46634 0.26236 0.36378 1.18759 4 3.11822 1.44134 2.95244 0.40505 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 5 3.42037 0.26558 3.24827 1.82203 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 6 0.08399 4.05661 3.13849 3.91701 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 7 3.96034 2.71895 3.82511 0.11296 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 8 3.37534 3.21752 3.91398 0.09896 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 9 2.46613 1.45236 3.01306 0.45898 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.07151 2.90559 4.24787 0.87897 0.53650 1.09861 0.40547 10 3.00646 0.37087 2.81257 1.60768 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 11 1.07019 1.45061 1.36769 1.78418 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 12 3.99083 0.10436 3.83443 2.83021 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 13 0.86417 3.36039 0.69368 3.12029 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 14 1.91568 1.17404 1.83707 0.95618 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 15 0.85705 2.69751 0.85075 2.51184 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 16 4.04662 0.10287 3.91507 2.80783 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 17 3.98312 2.72165 3.83797 0.11197 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 18 2.57929 0.34355 2.20666 2.25516 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 19 2.58501 2.24036 2.81546 0.27667 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 20 4.05763 0.10238 3.92135 2.80998 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 21 3.99217 2.72270 3.84304 0.11159 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 22 4.04918 0.10276 3.91653 2.80833 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 23 0.53054 2.92274 1.26693 2.57397 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 24 3.08361 0.21487 3.68658 2.09964 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 25 3.12492 0.20285 3.72333 2.15846 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 26 1.99749 2.11568 0.57757 1.70093 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 27 1.79822 2.05052 0.50480 2.28167 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10464 2.46445 4.24787 0.30774 1.32843 1.09861 0.40547 28 2.30488 2.09584 2.39007 0.37740 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 29 3.77758 0.08166 4.30734 3.16840 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 30 0.70278 1.98687 1.92853 1.50369 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 31 2.14601 3.55319 0.20702 3.18414 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 32 0.34757 3.03159 1.71407 2.72992 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 33 1.69845 1.89178 0.71872 1.72118 36 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 34 0.80360 1.59708 1.92119 1.59275 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 35 1.96285 2.94000 0.35577 2.24390 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 36 1.76941 1.93081 0.55257 2.21582 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 37 2.46685 0.57857 3.09046 1.17451 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 38 3.09111 4.08093 0.08781 3.82963 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 39 0.12680 4.04449 2.55646 3.73013 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 40 3.09788 4.09243 0.08696 3.84220 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 41 0.27106 3.01082 2.07151 2.77769 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 42 1.78320 2.13540 0.56948 1.91132 45 G - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 43 0.12743 4.03456 2.55463 3.72001 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 44 3.08936 4.07795 0.08802 3.82639 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 45 2.74926 1.02015 2.49726 0.70690 48 u - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 46 1.40603 1.86459 0.90273 1.63750 49 g - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 47 3.33525 1.76253 3.15027 0.28776 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 48 2.68977 4.00424 0.11506 3.79196 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 49 1.87135 1.19519 1.05319 1.63673 52 g - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 50 1.21952 2.98267 0.52449 2.77875 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 51 0.06696 4.03272 3.68923 3.81426 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 52 0.42732 1.73986 2.66478 2.27707 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 53 0.12875 4.01437 2.55086 3.69944 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 54 4.10672 3.43762 3.40772 0.08525 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 55 2.46220 3.39699 0.17491 3.17606 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 56 0.32810 3.10794 1.71958 2.88467 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 57 0.45862 3.08067 1.32685 2.87166 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.02901 4.24787 4.24787 1.46634 0.26236 1.09861 0.40547 58 2.94654 3.89368 0.10466 3.63132 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.08279 4.24787 2.73091 1.46634 0.26236 1.09861 0.40547 59 0.23588 3.37509 2.01627 3.15226 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.03058 4.19567 4.19567 1.46634 0.26236 1.88074 0.16544 60 3.37738 4.33152 0.07017 3.88819 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.15893 4.19567 2.02583 1.46634 0.26236 1.88074 0.16544 61 0.09593 3.68838 3.37106 3.43879 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.01750 4.05424 * 1.46634 0.26236 0.00000 * //