INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR2629 ACC RF04063 DESC MIR2629 microRNA precursor family STATES 202 NODES 51 CLEN 66 W 115 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 02:28:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04063/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 4.589844 CKSUM 212807964 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.90 EFP7GF -11.0545 0.71925 ECMLC 0.69086 -5.39403 2.80009 1600000 344931 0.003479 ECMGC 0.49365 -12.49475 -0.92798 1600000 120743 0.003313 ECMLI 0.72439 -3.08599 3.79325 1600000 175138 0.006852 ECMGI 0.51074 -9.24228 1.28287 1600000 86432 0.004628 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 115 174 -7.760 -7.967 -0.264 -2.654 IL 1 1 2 1 4 1 11 117 176 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 116 175 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 12 115 174 -8.512 -0.014 -7.166 0.264 -1.169 -1.470 0.996 D 4 2 3 5 3 0 5 111 170 -7.858 -3.371 -0.154 IL 5 5 3 5 3 1 10 115 174 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 11 114 173 -8.512 -0.014 -7.166 -0.106 -1.461 0.949 -0.365 D 7 5 3 8 3 0 5 111 170 -7.858 -3.371 -0.154 IL 8 8 3 8 3 1 10 114 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 10 113 172 -8.512 -0.014 -7.166 -1.200 0.596 -2.029 0.855 D 10 8 3 11 3 0 5 110 169 -7.858 -3.371 -0.154 IL 11 11 3 11 3 1 9 113 172 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 9 112 171 -8.512 -0.014 -7.166 -0.544 -0.475 -0.147 0.758 D 13 11 3 14 3 0 4 110 169 -7.858 -1.135 -0.888 IL 14 14 3 14 3 1 8 112 171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 1 8 111 170 -8.630 -0.013 -7.284 -0.531 -0.139 0.227 0.298 D 16 14 3 17 3 0 4 109 168 -7.218 -0.587 -1.609 IL 17 17 3 17 3 1 7 111 170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 7 110 169 -8.731 -0.012 -7.385 1.233 -1.546 -1.664 -0.013 D 19 17 3 20 3 0 3 107 166 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 6 110 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 7 109 168 -8.731 -0.012 -7.385 0.323 -0.637 0.227 -0.096 D 22 20 3 23 3 0 2 106 165 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 5 109 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 6 108 167 -8.731 -0.012 -7.385 0.226 -1.309 0.525 -0.018 D 25 23 3 26 3 0 2 105 164 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 5 108 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 5 107 166 -8.731 -0.012 -7.385 0.205 -1.119 -0.584 0.782 D 28 26 3 29 3 0 1 105 163 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 107 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 4 106 165 -8.731 -0.123 -3.658 0.223 -1.120 -0.617 0.783 D 31 29 3 32 3 0 1 104 162 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 107 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 4 105 164 -8.977 -0.117 -3.716 0.228 -0.374 -1.330 0.731 D 34 32 3 35 3 0 0 103 161 -6.387 -1.500 -0.656 IL 35 35 3 35 3 1 5 105 164 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 74 - U - - MR 36 35 3 38 3 1 6 104 163 -8.873 -0.013 -7.190 -1.495 -0.504 -2.258 1.449 D 37 35 3 38 3 0 0 101 160 -7.908 -3.086 -0.188 IR 38 38 3 38 3 1 4 104 163 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 73 - a - - MR 39 38 3 41 3 1 5 103 162 -8.873 -0.013 -7.190 0.909 -0.418 -1.293 -0.050 D 40 38 3 41 3 0 0 101 159 -7.908 -3.086 -0.188 IR 41 41 3 41 3 1 4 103 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 72 - C - - MR 42 41 3 44 3 1 5 102 161 -8.873 -0.013 -7.190 -0.524 1.351 -2.194 -0.901 D 43 41 3 44 3 0 0 100 159 -7.908 -1.218 -0.821 IR 44 44 3 44 3 1 3 102 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 71 - u - - MR 45 44 3 47 5 1 4 101 160 -7.682 -0.026 -7.497 -7.709 -8.601 0.235 -1.132 0.217 0.268 D 46 44 3 47 5 0 0 99 158 -5.979 -1.334 -1.203 -5.036 -3.030 IR 47 47 3 47 5 1 2 101 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 70 u a - - MP 48 47 3 52 6 2 4 100 159 -9.414 -9.354 -0.017 -8.130 -8.410 -8.805 -2.444 -2.539 -2.596 1.247 -2.311 -3.429 1.530 -2.760 -2.633 0.788 -3.183 -0.898 1.840 -2.746 1.314 0.038 ML 49 47 3 52 6 1 1 99 158 -6.999 -7.345 -0.633 -1.754 -7.195 -4.725 -0.324 -0.580 -0.959 1.013 MR 50 47 3 52 6 1 1 98 157 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 96 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 99 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 99 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 69 C G - - MP 54 53 6 58 4 2 3 98 157 -7.760 -7.967 -0.030 -6.381 -4.812 -4.835 -4.505 -1.060 -3.183 -4.912 3.462 0.646 -4.538 -0.941 -4.829 -2.869 0.335 -4.872 -0.867 -3.382 ML 55 53 6 58 4 1 1 97 156 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 97 156 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 95 154 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 1 98 157 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 1 98 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - C - - - ML 60 59 6 62 3 1 2 96 155 -9.082 -0.011 -7.400 -1.280 1.203 -0.363 -0.976 D 61 59 6 62 3 0 0 95 153 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 1 96 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 68 - G - - MR 63 62 3 65 5 1 1 95 154 -7.782 -0.024 -7.598 -7.810 -8.702 -0.399 -1.857 1.243 -0.741 D 64 62 3 65 5 0 0 93 152 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 95 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 67 u a - - MP 66 65 3 70 6 2 2 94 153 -9.473 -2.588 -0.279 -8.189 -8.469 -8.864 -2.831 -2.828 -2.964 1.231 -2.625 -3.814 1.336 -3.069 0.021 0.615 -3.522 -1.013 2.628 -3.144 -0.521 -2.038 ML 67 65 3 70 6 1 1 92 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 92 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 88 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 93 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 93 152 -3.588 -0.198 -7.099 -5.267 -6.373 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 65 C G - - MP 72 71 6 76 6 2 2 92 151 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -4.405 -4.447 -4.227 -0.718 0.599 -4.736 3.183 -3.819 -4.248 -0.598 -4.606 -2.518 0.533 -4.528 1.007 -3.124 ML 73 71 6 76 6 1 1 90 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 90 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 86 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 91 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 91 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 64 G C - - MP 78 77 6 82 6 2 2 90 149 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -4.373 -3.036 -4.374 0.419 -5.179 -4.783 -0.611 -4.841 -0.019 3.372 -4.688 0.525 -0.866 -4.235 -2.563 -3.318 ML 79 77 6 82 6 1 1 88 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 88 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 84 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 89 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 89 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 63 G C - - MP 84 83 6 88 6 2 2 88 147 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -4.484 0.062 -4.442 0.453 -5.445 -4.794 -0.672 -4.975 -4.436 3.383 -4.757 0.512 -0.927 -4.251 -2.664 -3.373 ML 85 83 6 88 6 1 1 86 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 86 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 82 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 87 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 87 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 62 u g - - MP 90 89 6 94 6 2 2 86 145 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -5.142 -5.245 -4.695 -1.441 -3.223 -4.991 2.740 -4.077 -4.753 -1.329 -4.977 -3.361 0.208 -5.115 2.771 -3.572 ML 91 89 6 94 6 1 1 84 143 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 84 143 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 80 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 85 144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 85 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 61 A U - - MP 96 95 6 100 6 2 2 84 143 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -4.301 0.575 -4.426 3.479 -5.512 -6.321 -1.288 -4.552 -4.181 0.479 -4.791 -0.571 -1.453 -5.192 -3.123 -3.181 ML 97 95 6 100 6 1 1 82 141 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 82 141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 78 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 83 142 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 83 142 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 60 G C - - MP 102 101 6 106 6 2 2 82 141 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -6.188 -3.811 -6.598 -0.840 -7.210 -5.226 -2.220 -6.822 -5.159 3.852 -5.420 -1.598 -2.581 -5.378 -4.365 -5.456 ML 103 101 6 106 6 1 1 80 139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 80 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 76 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 81 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 81 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 59 U A - - MP 108 107 6 112 6 2 2 80 139 -9.473 -9.412 -0.102 -8.189 -4.065 -8.864 -5.164 -5.180 -4.854 -1.375 -3.519 -5.260 0.828 -4.324 -4.879 -1.234 -5.177 -3.195 3.529 -5.210 0.421 -3.630 ML 109 107 6 112 6 1 1 78 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 78 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 74 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 79 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 79 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 58 U A - - MP 114 113 6 118 6 2 2 78 137 -9.388 -9.328 -0.017 -8.104 -8.384 -8.779 -5.823 -5.666 -5.466 -1.889 -4.124 -5.876 0.206 -4.912 -5.462 -1.805 -5.756 -3.529 3.768 -5.884 -1.762 -4.034 ML 115 113 6 118 6 1 1 76 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 76 135 -7.873 -6.602 -0.657 -6.580 -1.714 -4.794 1.313 -1.271 -1.006 -0.729 D 117 113 6 118 6 0 0 72 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 77 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 77 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 57 A U - - MP 120 119 6 124 6 2 2 76 135 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -5.260 -4.023 -5.034 3.814 -6.281 -7.555 -1.893 -4.981 -5.036 -0.531 -5.646 -1.336 -2.281 -6.408 -3.818 -3.898 ML 121 119 6 124 6 1 1 74 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 74 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 70 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 75 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 75 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 56 A U - - MP 126 125 6 130 6 2 2 74 133 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -5.260 -4.023 -5.034 3.814 -6.281 -7.555 -1.893 -4.981 -5.036 -0.531 -5.646 -1.336 -2.281 -6.408 -3.818 -3.898 ML 127 125 6 130 6 1 1 72 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 72 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 68 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 73 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 73 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 55 C G - - MP 132 131 6 136 6 2 2 72 131 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -6.249 -6.298 -5.623 -2.470 -4.073 -5.810 3.857 -5.067 -5.790 -2.385 -5.804 -4.339 -0.802 -6.200 -1.884 -4.595 ML 133 131 6 136 6 1 1 70 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 70 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 66 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 71 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 71 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 54 U A - - MP 138 137 6 142 6 2 2 70 129 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -6.281 -6.130 -5.872 -2.351 -4.474 -6.243 -0.153 -5.280 -5.864 -2.302 -6.143 -3.995 3.826 -6.308 -2.097 -4.319 ML 139 137 6 142 6 1 1 68 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 68 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 65 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 69 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 69 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 53 g c - - MP 144 143 6 148 6 2 2 68 127 -9.473 -9.412 -0.016 -8.189 -8.469 -8.864 -3.803 -2.639 -3.780 0.828 -4.509 -4.356 -0.024 -4.280 -3.939 2.918 -4.271 1.652 -0.287 -0.417 -1.945 -2.756 ML 145 143 6 148 6 1 1 67 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 66 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 64 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 67 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 67 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 52 C G - - MP 150 149 6 154 4 2 2 66 125 -7.760 -7.967 -0.030 -6.381 -5.673 -5.743 -5.235 -1.926 -0.334 -5.532 3.727 -4.726 -5.345 -1.803 -5.488 -3.809 -0.397 -5.688 -1.572 -4.169 ML 151 149 6 154 4 1 1 65 124 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 64 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 63 122 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 66 125 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 66 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - a - - - ML 156 155 6 158 3 1 1 64 123 -8.731 -0.012 -7.385 0.996 0.237 -1.712 -0.938 D 157 155 6 158 3 0 0 62 121 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 65 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - G - - - ML 159 158 3 161 3 1 1 63 122 -8.731 -0.012 -7.385 -0.932 -3.048 1.669 -2.522 D 160 158 3 161 3 0 0 61 120 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 64 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - u - - - ML 162 161 3 164 3 1 1 62 121 -8.731 -0.012 -7.385 0.171 -0.102 -1.389 0.642 D 163 161 3 164 3 0 0 60 119 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 63 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - a - - - ML 165 164 3 167 3 1 1 61 120 -8.731 -0.012 -7.385 0.501 0.467 -1.522 -0.225 D 166 164 3 167 3 0 0 59 117 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 62 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - G - - - ML 168 167 3 170 3 1 1 60 119 -8.731 -0.144 -3.437 -0.130 -2.572 1.420 -2.047 D 169 167 3 170 3 0 0 57 116 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 61 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - G - - - ML 171 170 3 173 3 1 1 59 118 -8.601 -0.013 -7.255 -0.923 -1.646 1.072 0.072 D 172 170 3 173 3 0 0 55 114 -7.412 -2.925 -0.213 IL 173 173 3 173 3 1 1 60 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - U - - - ML 174 173 3 176 3 1 1 58 117 -8.601 -0.013 -7.255 -0.566 -1.492 -2.020 1.445 D 175 173 3 176 3 0 0 54 113 -7.412 -2.925 -0.213 IL 176 176 3 176 3 1 1 59 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - U - - - ML 177 176 3 179 3 1 1 57 116 -8.601 -0.013 -7.255 -2.692 -2.490 -3.466 1.839 D 178 176 3 179 3 0 0 53 112 -7.412 -2.925 -0.213 IL 179 179 3 179 3 1 1 58 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 180 179 3 182 3 1 1 56 115 -8.601 -0.013 -7.255 -1.341 0.238 -2.147 1.138 D 181 179 3 182 3 0 0 51 110 -7.412 -2.925 -0.213 IL 182 182 3 182 3 1 1 57 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - C - - - ML 183 182 3 185 3 1 1 55 114 -8.601 -0.397 -2.072 -1.871 1.488 -2.767 -0.368 D 184 182 3 185 3 0 0 49 108 -7.412 -2.925 -0.213 IL 185 185 3 185 3 1 1 57 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - a - - - ML 186 185 3 188 3 1 1 55 114 -0.756 -1.325 -6.875 0.687 -1.006 -0.205 0.035 D 187 185 3 188 3 0 0 37 96 -8.681 -0.187 -3.072 IL 188 188 3 188 3 1 1 56 115 -0.451 -1.933 -7.219 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - U - - - ML 189 188 3 191 3 1 1 16 34 -8.731 -0.012 -7.385 -1.551 0.042 -2.350 1.282 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - U - - - ML 192 191 3 194 3 1 1 14 33 -8.731 -0.012 -7.385 -2.927 -2.691 -3.705 1.863 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 195 194 3 197 3 1 1 13 31 -8.731 -0.012 -7.385 -3.514 1.887 -4.271 -2.629 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - G - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -3.058 -4.452 1.912 -3.799 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR2629 ACC RF04063 DESC MIR2629 microRNA precursor family LENG 66 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 02:28:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04063/CM NSEQ 8 EFFN 6.214844 CKSUM 212807964 STATS LOCAL MSV -8.1320 0.71925 STATS LOCAL VITERBI -9.2286 0.71925 STATS LOCAL FORWARD -3.7286 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50737 1.46277 1.37372 1.22502 1.38629 1.38629 1.38629 1.38629 0.18620 4.43351 1.84503 1.46634 0.26236 0.00000 * 1 1.19584 2.35669 2.56484 0.64267 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02820 4.27551 4.27551 1.46634 0.26236 2.72848 0.06755 2 1.50952 2.55545 0.65744 1.69744 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02820 4.27551 4.27551 1.46634 0.26236 2.72848 0.06755 3 2.44541 0.91629 3.04181 0.76451 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.02820 4.27551 4.27551 1.46634 0.26236 2.72848 0.06755 4 1.87282 1.73674 1.45799 0.82665 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.02820 4.27551 4.27551 1.46634 0.26236 0.72597 0.66136 5 1.86947 1.46008 1.17809 1.18512 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.02587 4.36086 4.36086 1.46634 0.26236 0.25447 1.49313 6 0.47617 2.65677 2.74686 1.40838 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 7 1.16004 1.84870 1.19474 1.48589 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 8 1.23782 2.42709 0.97005 1.41623 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 9 1.24255 2.28056 1.80425 0.81075 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 10 1.22881 2.28142 1.83006 0.81009 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.10516 4.43351 2.43101 1.46634 0.26236 1.09861 0.40547 11 1.22031 1.66066 2.41583 0.85436 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.02604 4.35439 4.35439 1.46634 0.26236 0.23901 1.54837 12 1.72632 1.67504 1.98865 0.69740 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 13 3.58539 0.16408 3.46502 2.38237 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 14 2.59779 0.45606 1.63483 2.33511 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 15 1.78641 1.93143 1.68995 0.68722 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 16 3.43404 0.32580 3.26057 1.57296 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 17 2.56182 3.39727 0.16218 3.24213 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 18 1.89850 3.36507 0.25453 3.20969 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 19 3.83138 0.84510 3.70083 0.64606 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 20 0.15546 3.96770 2.30768 3.66645 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 21 3.40658 4.38351 0.06044 4.34184 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 22 3.82370 2.34399 3.67019 0.15462 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.14230 4.43351 2.11387 1.46634 0.26236 1.09861 0.40547 23 4.28220 3.00267 4.17565 0.08211 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02701 4.31821 4.31821 1.46634 0.26236 0.17950 1.80599 24 0.08205 4.30139 3.01044 4.13805 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 25 0.08209 4.30055 3.01022 4.13704 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 26 4.47948 0.06471 4.41381 3.23866 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 27 4.53478 3.26804 4.46860 0.06217 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 28 2.20213 2.91541 0.33049 2.14833 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 29 4.06808 0.10307 3.94597 2.78889 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 30 0.64154 1.17209 2.80909 2.26779 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 31 2.10943 3.77010 0.19498 3.41765 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 32 1.26564 1.44478 2.46788 0.92286 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 33 1.01982 1.00520 2.60467 1.61224 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 34 1.49867 3.43450 0.35821 3.09218 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.12041 4.43351 2.28703 1.46634 0.26236 1.09861 0.40547 35 2.23425 2.75338 0.56344 1.34719 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02643 4.33953 4.33953 1.46634 0.26236 2.35657 0.09954 36 1.85129 2.64479 3.03807 0.32294 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02643 4.33953 4.33953 1.46634 0.26236 2.35657 0.09954 37 3.63380 3.44135 4.17696 0.07665 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02643 4.33953 4.33953 1.46634 0.26236 2.35657 0.09954 38 2.56867 1.18864 3.14228 0.55244 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02643 4.33953 4.33953 1.46634 0.26236 2.35657 0.09954 39 2.97494 0.29884 3.61487 1.71283 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.31085 4.33953 1.36990 1.46634 0.26236 2.35657 0.09954 40 0.88112 2.16827 1.52237 1.37392 40 a - - _ 1.38629 1.38629 1.38629 1.38629 1.06793 0.44770 4.06366 1.51483 0.24826 0.07136 2.67551 41 2.74296 1.33989 3.30789 0.45074 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 42 3.79528 3.58374 4.34109 0.06536 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 43 4.22251 0.05308 4.68865 3.58135 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 44 3.85063 4.85107 0.04272 4.36368 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 45 2.27764 4.08482 0.15173 3.84310 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 46 3.00116 0.59622 2.72067 1.09796 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 47 0.07289 4.61547 3.08327 4.22713 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 48 3.46394 4.49054 0.05902 4.21402 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 49 4.15134 3.37777 4.01026 0.07042 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 50 4.02864 3.34737 3.93867 0.07521 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 51 0.10814 4.07929 2.79215 3.71785 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 52 0.25861 3.82701 1.72478 3.57952 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 53 4.44251 0.07436 4.25489 3.08561 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 54 3.84053 1.78876 3.73645 0.23888 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 55 2.74307 3.84208 0.12053 3.58516 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 56 3.43652 0.27633 3.17704 1.78648 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 57 2.27832 0.36933 3.20653 1.79668 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 58 1.70795 3.40824 0.29525 3.18644 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.41430 1.11680 4.43351 0.07103 2.67998 1.09861 0.40547 59 0.60220 2.41421 1.75761 1.65811 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 60 1.73312 2.86929 0.46485 1.97835 68 G - - - 1.38629 1.38629 1.38629 1.38629 0.02403 4.43351 4.43351 1.46634 0.26236 1.09861 0.40547 61 2.68900 3.67101 0.26686 1.96026 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.10516 4.43351 2.43101 1.46634 0.26236 1.09861 0.40547 62 1.33484 2.14848 1.02647 1.33991 70 g - - > 1.38629 1.38629 1.38629 1.38629 0.02604 4.35439 4.35439 1.46634 0.26236 2.24151 0.11238 63 1.22762 2.27997 1.19823 1.19403 71 u - - : 1.38629 1.38629 1.38629 1.38629 0.10708 4.35439 2.42258 1.46634 0.26236 2.24151 0.11238 64 1.83512 0.36671 3.20852 2.23514 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.02820 4.27551 4.27551 1.46634 0.26236 2.72848 0.06755 65 0.70923 1.68509 2.40810 1.45859 73 a - - : 1.38629 1.38629 1.38629 1.38629 0.02820 4.27551 4.27551 1.46634 0.26236 2.72848 0.06755 66 2.69135 1.77156 3.22465 0.32521 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.01420 4.26151 * 1.46634 0.26236 0.00000 * //