INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-59 ACC RF03881 DESC mir-59 microRNA precursor family STATES 202 NODES 46 CLEN 66 W 81 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 15:47:18 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03881/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.871094 CKSUM 4276922973 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 88.00 NC 67.30 EFP7GF -9.0112 0.71921 ECMLC 0.64263 -5.41947 3.41977 1600000 351657 0.003412 ECMGC 0.43425 -14.20454 -0.87593 1600000 130539 0.003064 ECMLI 0.62650 -4.29313 4.39448 1600000 277292 0.004328 ECMGI 0.48486 -8.96886 2.22330 1600000 90954 0.004398 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.842 -8.088 -0.082 -4.541 IL 1 1 2 1 4 1 10 83 102 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 66 - G - - MR 3 2 3 5 3 1 13 81 101 -8.334 -0.019 -6.652 -1.533 -2.746 1.712 -2.132 D 4 2 3 5 3 0 5 80 99 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 11 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 65 - U - - MR 6 5 3 8 5 1 13 80 100 -7.074 -0.040 -6.889 -7.102 -7.993 -1.445 -1.448 -2.176 1.606 D 7 5 3 8 5 0 5 79 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 81 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 64 u a - - MP 9 8 3 13 6 2 14 79 99 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.030 -2.723 -3.088 1.848 -2.654 -3.911 1.590 -3.093 -3.099 1.289 -3.597 -0.609 2.086 -3.277 -0.385 -2.045 ML 10 8 3 13 6 1 7 78 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 78 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 79 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 79 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 63 C G - - MP 15 14 6 19 6 2 13 77 97 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 16 14 6 19 6 1 6 76 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 76 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 77 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 62 G U - - MP 21 20 6 25 6 2 13 75 95 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.589 -2.369 -3.754 1.150 -4.448 -5.172 -0.058 -3.780 -3.423 1.394 -3.942 3.054 -0.417 -4.386 -2.000 -2.460 ML 22 20 6 25 6 1 6 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 61 U A - - MP 27 26 6 31 6 2 12 73 93 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 28 26 6 31 6 1 5 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 60 C G - - MP 33 32 6 37 6 2 11 71 91 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 34 32 6 37 6 1 5 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 59 C G - - MP 39 38 6 43 6 2 10 69 89 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 40 38 6 43 6 1 4 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 58 U A - - MP 45 44 6 49 6 2 9 67 87 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 46 44 6 49 6 1 4 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 57 G C - - MP 51 50 6 55 6 2 7 65 85 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.702 -3.075 -4.797 0.227 -5.177 -4.678 -0.551 -5.037 -4.302 3.629 -4.642 -0.772 -0.937 -4.442 -2.586 -3.675 ML 52 50 6 55 6 1 3 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 56 A U - - MP 57 56 6 61 4 2 5 63 83 -6.842 -8.088 -0.082 -4.541 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 58 56 6 61 4 1 2 63 82 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 62 82 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 60 80 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 2 63 82 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - A - - MR 63 62 6 65 5 1 5 61 81 -7.074 -0.040 -6.889 -7.102 -7.993 1.709 -2.327 -1.963 -1.865 D 64 62 6 65 5 0 0 60 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 3 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 54 A U - - MP 66 65 3 70 6 2 6 60 80 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 67 65 3 70 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 53 A U - - MP 72 71 6 76 6 2 6 58 78 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 73 71 6 76 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 52 A U - - MP 78 77 6 82 6 2 6 56 76 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 79 77 6 82 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 51 C G - - MP 84 83 6 88 6 2 5 54 74 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 85 83 6 88 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 50 G C - - MP 90 89 6 94 6 2 4 52 72 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.702 -3.075 -4.797 0.227 -5.177 -4.678 -0.551 -5.037 -4.302 3.629 -4.642 -0.772 -0.937 -4.442 -2.586 -3.675 ML 91 89 6 94 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 49 A U - - MP 96 95 6 100 4 2 2 50 70 -6.924 -7.131 -0.054 -5.545 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 97 95 6 100 4 1 1 51 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 102 101 6 104 3 1 2 48 67 -7.942 -0.021 -6.596 1.709 -2.327 -1.963 -1.865 D 103 101 6 104 3 0 0 46 66 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - - - ML 105 104 3 107 3 1 1 47 66 -8.334 -0.019 -6.652 1.126 -1.422 -0.160 -0.867 D 106 104 3 107 3 0 0 45 65 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 48 - A - - MR 108 107 3 110 3 1 1 46 65 -8.334 -0.019 -6.652 1.709 -2.327 -1.963 -1.865 D 109 107 3 110 3 0 0 44 63 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 46 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 47 - A - - MR 111 110 3 113 5 1 1 45 64 -7.074 -0.040 -6.889 -7.102 -7.993 1.709 -2.327 -1.963 -1.865 D 112 110 3 113 5 0 0 43 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 46 C G - - MP 114 113 3 118 6 2 2 44 63 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 115 113 3 118 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 45 G C - - MP 120 119 6 124 6 2 2 42 61 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.702 -3.075 -4.797 0.227 -5.177 -4.678 -0.551 -5.037 -4.302 3.629 -4.642 -0.772 -0.937 -4.442 -2.586 -3.675 ML 121 119 6 124 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 44 a u - - MP 126 125 6 130 6 2 2 40 59 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.315 -2.389 -3.418 2.760 -3.936 -4.685 0.284 -3.603 -3.309 1.608 -3.856 1.379 0.022 -3.818 -1.605 -2.275 ML 127 125 6 130 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 43 A U - - MP 132 131 6 136 6 2 2 38 57 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 133 131 6 136 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 42 A U - - MP 138 137 6 142 4 2 2 36 55 -6.842 -8.088 -0.082 -4.541 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 139 137 6 142 4 1 1 35 54 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 35 54 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 33 52 -12.737 -14.007 -2.036 -0.404 IL 142 142 5 142 4 1 1 35 54 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 35 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 41 - A - - MR 144 143 6 146 5 1 1 34 53 -7.074 -0.040 -6.889 -7.102 -7.993 1.709 -2.327 -1.963 -1.865 D 145 143 6 146 5 0 0 32 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 40 C G - - MP 147 146 3 151 6 2 2 33 52 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 148 146 3 151 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 39 u a - - MP 153 152 6 157 4 2 2 31 50 -6.924 -7.131 -0.054 -5.545 -3.117 -2.856 -3.161 1.467 -2.608 -3.962 1.676 -3.099 -3.160 1.125 -3.651 -0.747 2.387 -3.363 -0.321 -2.095 ML 154 152 6 157 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - a - - - ML 159 158 6 161 3 1 1 28 47 -7.942 -0.021 -6.596 0.765 -1.368 0.414 -0.782 D 160 158 6 161 3 0 0 27 46 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 162 161 3 164 3 1 1 27 46 -7.942 -0.021 -6.596 1.709 -2.327 -1.963 -1.865 D 163 161 3 164 3 0 0 26 45 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - u - - - ML 165 164 3 167 3 1 1 26 45 -7.942 -0.021 -6.596 0.118 -0.117 -1.049 0.594 D 166 164 3 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - u - - - ML 168 167 3 170 3 1 1 25 44 -7.942 -0.021 -6.596 0.197 -0.785 -0.205 0.492 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - u - - - ML 171 170 3 173 3 1 1 24 42 -7.942 -0.021 -6.596 -0.687 0.383 -1.459 0.775 D 172 170 3 173 3 0 0 22 41 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - a - - - ML 174 173 3 176 3 1 1 22 41 -7.942 -0.021 -6.596 0.485 -0.163 -0.980 0.263 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - u - - - ML 177 176 3 179 3 1 1 21 40 -7.942 -0.021 -6.596 0.104 -0.100 -1.054 0.595 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - u - - - ML 180 179 3 182 3 1 1 20 39 -7.942 -0.021 -6.596 0.208 -0.784 -0.222 0.492 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - a - - - ML 183 182 3 185 3 1 1 19 37 -7.942 -0.021 -6.596 0.765 -1.368 0.414 -0.782 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - a - - - ML 186 185 3 188 3 1 1 18 36 -7.942 -0.021 -6.596 0.583 -0.882 -0.151 0.082 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - A - - - ML 189 188 3 191 3 1 1 16 35 -7.942 -0.021 -6.596 1.126 -1.422 -0.160 -0.867 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - A - - - ML 192 191 3 194 3 1 1 15 33 -7.942 -0.021 -6.596 1.011 -1.023 -1.100 0.038 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 37 - A - - - ML 195 194 3 197 3 1 1 13 31 -7.942 -0.021 -6.596 1.027 -1.035 -1.107 0.014 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 38 - g - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 0.217 -0.901 0.274 0.129 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-59 ACC RF03881 DESC mir-59 microRNA precursor family LENG 66 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 15:47:18 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03881/CM NSEQ 4 EFFN 2.871094 CKSUM 4276922973 STATS LOCAL MSV -8.5416 0.71921 STATS LOCAL VITERBI -8.8791 0.71921 STATS LOCAL FORWARD -3.5102 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15819 1.63994 1.43217 1.37371 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 0.00000 * 1 1.27244 1.68686 1.76827 1.01026 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 2 3.44068 0.18753 3.24648 2.30218 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 3 2.03258 3.13910 0.25444 2.98917 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 4 3.25066 2.11764 3.03150 0.23232 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 5 3.44216 0.18740 3.24724 2.30245 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 6 3.44129 0.18748 3.24679 2.30229 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 7 3.24874 2.11749 3.03057 0.23249 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 8 2.73856 3.47733 0.13750 3.41387 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 9 0.25572 3.07157 2.04819 2.98925 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 10 0.25766 3.06123 2.04587 2.97508 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 11 0.25657 3.06702 2.04717 2.98301 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 12 0.25608 3.06965 2.04776 2.98662 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 13 3.43656 0.18788 3.24438 2.30142 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 14 2.73775 3.47627 0.13765 3.41242 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 15 0.25578 3.07127 2.04812 2.98884 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 16 0.11969 3.47944 3.18061 3.20835 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 17 0.52407 2.60792 1.47877 2.24158 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 18 3.44556 0.18711 3.24897 2.30308 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 19 2.74188 3.48165 0.13688 3.41978 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 20 0.63463 2.89180 1.05861 2.69633 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 21 0.25530 3.07385 2.04870 2.99238 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 22 0.25539 3.07336 2.04859 2.99171 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 23 3.41243 0.18996 3.23196 2.29693 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 24 1.57481 1.63247 1.87996 0.80988 24 u - - < 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 25 0.79955 2.55973 1.02637 2.16424 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 26 0.11969 3.47944 3.18061 3.20835 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 27 1.31262 1.44266 2.21949 0.95212 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 28 1.25396 2.02333 1.50826 1.01855 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 29 2.06504 1.04179 2.62258 0.80352 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 30 1.01650 1.47718 2.16837 1.21910 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 31 1.32479 1.42890 2.22359 0.95102 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 32 1.24438 2.02219 1.52200 1.01821 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 33 0.79955 2.55973 1.02637 2.16424 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 34 0.95090 2.09317 1.47351 1.34251 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 35 0.52407 2.60792 1.47877 2.24158 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 36 0.60875 2.23953 2.30673 1.38680 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 37 0.59661 2.24961 2.31394 1.40645 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 38 1.25083 2.11379 1.12948 1.31025 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 39 0.90213 2.07244 1.46598 1.43731 39 a - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 40 2.58518 3.41950 0.16065 3.21144 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 41 0.11969 3.47944 3.18061 3.20835 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 42 3.21518 2.37089 2.88289 0.21013 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 43 3.21742 2.37123 2.88382 0.20991 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 44 2.91145 1.86245 2.68825 0.32530 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 45 3.62316 0.16240 3.32712 2.43837 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 46 2.58963 3.42608 0.15965 3.21908 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 47 0.11969 3.47944 3.18061 3.20835 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 48 0.11969 3.47944 3.18061 3.20835 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 49 3.20970 2.37007 2.88062 0.21065 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 50 3.60165 0.16392 3.31716 2.43435 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 51 2.58111 3.41349 0.16157 3.20448 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 52 3.21354 2.37065 2.88221 0.21028 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 53 3.21600 2.37101 2.88323 0.21005 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 54 3.21967 2.37156 2.88475 0.20970 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 55 0.11969 3.47944 3.18061 3.20835 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 56 3.20947 2.37004 2.88052 0.21067 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 57 3.60103 0.16396 3.31687 2.43423 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 58 0.26359 3.21888 1.95406 2.99538 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 59 2.58133 3.41381 0.16152 3.20486 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 60 2.58202 3.41484 0.16137 3.20604 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 61 0.26321 3.22137 1.95442 2.99823 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 62 3.19792 2.10657 2.93478 0.24289 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 63 2.58579 3.42040 0.16051 3.21249 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 64 1.12057 1.95737 1.51743 1.16027 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 65 2.83762 2.76342 3.36320 0.16992 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.03814 3.97866 3.97866 1.46634 0.26236 1.09861 0.40547 66 2.94299 3.85180 0.11260 3.42525 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.01925 3.95977 * 1.46634 0.26236 0.00000 * //