INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-5681 ACC RF03871 DESC mir-5681 microRNA precursor family STATES 187 NODES 38 CLEN 61 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 09:41:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03871/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.683594 CKSUM 3271453116 NULL 0.000 0.000 0.000 0.000 GA 88.00 TC 88.00 NC 85.30 EFP7GF -5.5599 0.72931 ECMLC 0.68502 -4.34632 3.81682 1600000 321892 0.003728 ECMGC 0.52486 -11.75592 -0.23997 1600000 168669 0.002372 ECMLI 0.66967 -2.97820 5.11569 1600000 271120 0.004426 ECMGI 0.54550 -7.89929 2.59831 1600000 122755 0.003259 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 75 95 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 IL 1 1 2 1 6 1 2 77 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 2 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 61 G C - - MP 3 2 3 7 6 2 5 76 95 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.556 -3.006 -4.640 0.322 -4.971 -4.620 -0.382 -4.868 -4.204 3.590 -4.555 -0.699 -0.772 -4.346 -2.409 -3.520 ML 4 2 3 7 6 1 1 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 1 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 2 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 2 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 60 A U - - MP 9 8 6 13 6 2 5 74 93 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.708 -3.665 3.220 -3.927 -4.976 0.363 -3.717 -3.564 1.247 -4.104 -0.211 -0.055 -4.189 -1.578 -2.509 ML 10 8 6 13 6 1 1 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 1 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 59 A U - - MP 15 14 6 19 6 2 5 72 91 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.708 -3.665 3.220 -3.927 -4.976 0.363 -3.717 -3.564 1.247 -4.104 -0.211 -0.055 -4.189 -1.578 -2.509 ML 16 14 6 19 6 1 1 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 58 G C - - MP 21 20 6 25 6 2 4 70 89 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.556 -3.006 -4.640 0.322 -4.971 -4.620 -0.382 -4.868 -4.204 3.590 -4.555 -0.699 -0.772 -4.346 -2.409 -3.520 ML 22 20 6 25 6 1 1 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 57 A U - - MP 27 26 6 31 4 2 2 67 87 -6.843 -7.051 -0.057 -5.465 -3.636 -2.708 -3.665 3.220 -3.927 -4.976 0.363 -3.717 -3.564 1.247 -4.104 -0.211 -0.055 -4.189 -1.578 -2.509 ML 28 26 6 31 4 1 1 68 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 1 68 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 0 67 86 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 1 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 1 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 33 32 6 35 3 1 1 65 84 -7.868 -0.420 -2.010 -1.374 -2.560 1.671 -1.946 D 34 32 6 35 3 0 0 64 83 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 36 35 3 38 3 1 1 64 83 -7.905 -0.517 -1.752 -0.574 -1.602 1.320 -0.992 D 37 35 3 38 3 0 0 63 82 -6.789 -0.281 -2.572 IL 38 38 3 38 3 1 1 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 56 - C - - MR 39 38 3 41 3 1 1 63 82 -7.905 -0.026 -6.222 -0.669 1.134 -1.429 -0.313 D 40 38 3 41 3 0 0 62 81 -7.838 -0.401 -2.068 IR 41 41 3 41 3 1 1 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 55 - C - - MR 42 41 3 44 5 1 1 62 81 -7.009 -0.041 -6.825 -7.037 -7.929 -1.509 1.555 -2.324 -0.970 D 43 41 3 44 5 0 0 61 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 1 63 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 54 U A - - MP 45 44 3 49 6 2 2 61 80 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 46 44 3 49 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 1 60 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 53 A U - - MP 51 50 6 55 6 2 2 59 78 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.708 -3.665 3.220 -3.927 -4.976 0.363 -3.717 -3.564 1.247 -4.104 -0.211 -0.055 -4.189 -1.578 -2.509 ML 52 50 6 55 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 58 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 52 U A - - MP 57 56 6 61 6 2 2 57 76 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 58 56 6 61 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 56 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 51 U A - - MP 63 62 6 67 6 2 2 55 74 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 64 62 6 67 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 54 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 50 G C - - MP 69 68 6 73 6 2 2 53 72 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.556 -3.006 -4.640 0.322 -4.971 -4.620 -0.382 -4.868 -4.204 3.590 -4.555 -0.699 -0.772 -4.346 -2.409 -3.520 ML 70 68 6 73 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 52 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 49 C G - - MP 75 74 6 79 6 2 2 51 70 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 76 74 6 79 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 48 C G - - MP 81 80 6 85 6 2 2 49 68 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 82 80 6 85 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 47 A U - - MP 87 86 6 91 6 2 2 47 66 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.708 -3.665 3.220 -3.927 -4.976 0.363 -3.717 -3.564 1.247 -4.104 -0.211 -0.055 -4.189 -1.578 -2.509 ML 88 86 6 91 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 46 C G - - MP 93 92 6 97 6 2 2 45 64 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 94 92 6 97 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 45 C G - - MP 99 98 6 103 6 2 2 43 62 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 100 98 6 103 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 44 C G - - MP 105 104 6 109 6 2 2 41 60 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 106 104 6 109 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 43 U A - - MP 111 110 6 115 6 2 2 39 58 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 112 110 6 115 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 42 U A - - MP 117 116 6 121 6 2 2 37 56 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 118 116 6 121 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 41 U A - - MP 123 122 6 127 6 2 2 35 54 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 124 122 6 127 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 40 C G - - MP 129 128 6 133 6 2 2 33 52 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 130 128 6 133 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 39 U A - - MP 135 134 6 139 6 2 2 31 50 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 136 134 6 139 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 38 A U - - MP 141 140 6 145 6 2 2 29 48 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.636 -2.708 -3.665 3.220 -3.927 -4.976 0.363 -3.717 -3.564 1.247 -4.104 -0.211 -0.055 -4.189 -1.578 -2.509 ML 142 140 6 145 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 37 G C - - MP 147 146 6 151 6 2 2 27 46 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -4.556 -3.006 -4.640 0.322 -4.971 -4.620 -0.382 -4.868 -4.204 3.590 -4.555 -0.699 -0.772 -4.346 -2.409 -3.520 ML 148 146 6 151 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 36 U A - - MP 153 152 6 157 6 2 2 25 44 -9.069 -9.008 -0.022 -7.784 -8.064 -8.459 -3.992 -3.810 -3.852 -0.120 -2.838 -4.434 1.486 -3.519 -3.859 0.165 -4.242 -1.716 3.224 -4.151 -0.518 -2.702 ML 154 152 6 157 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 35 C G - - MP 159 158 6 163 4 2 2 23 42 -6.843 -7.051 -0.057 -5.465 -4.357 -4.245 -4.078 -0.495 -2.840 -4.515 3.487 -3.631 -4.122 -0.226 -4.403 -2.190 0.693 -4.438 -0.543 -2.969 ML 160 158 6 163 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - u - - - ML 165 164 6 167 3 1 1 20 39 -7.868 -0.022 -6.522 -0.629 0.425 -1.398 0.706 D 166 164 6 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - a - - - ML 168 167 3 170 3 1 1 19 38 -7.868 -0.022 -6.522 0.602 0.223 -1.048 -0.267 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - u - - - ML 171 170 3 173 3 1 1 18 36 -7.868 -0.022 -6.522 0.538 -0.801 -1.003 0.561 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - u - - - ML 174 173 3 176 3 1 1 16 35 -7.868 -0.022 -6.522 0.538 -0.801 -1.003 0.561 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - u - - - ML 177 176 3 179 3 1 1 15 33 -7.868 -0.022 -6.522 0.538 -0.801 -1.003 0.561 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - u - - - ML 180 179 3 182 3 1 1 13 32 -7.868 -0.022 -6.522 -0.320 -0.889 0.303 0.511 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - a - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.687 -1.314 0.467 -0.723 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-5681 ACC RF03871 DESC mir-5681 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 09:41:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03871/CM NSEQ 2 EFFN 1.910156 CKSUM 3271453116 STATS LOCAL MSV -8.4264 0.72931 STATS LOCAL VITERBI -9.2430 0.72931 STATS LOCAL FORWARD -3.0945 0.72931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44668 1.40509 1.32879 1.36843 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.46342 3.03073 0.20345 2.98245 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.44220 2.52130 1.64983 2.46581 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.44292 2.51929 1.64963 2.46270 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.44993 3.01639 0.20702 2.96189 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.44366 2.51726 1.64942 2.45956 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.47111 3.31519 0.19406 2.89008 6 G - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 7 1.86307 2.59315 0.42206 2.16871 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.16705 1.87180 8 2.71110 1.73306 2.44878 0.39989 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.44583 2.51128 1.64881 2.45034 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.72871 1.73343 2.45576 0.39717 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.73137 1.73349 2.45680 0.39676 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.44301 3.00905 0.20887 2.95142 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.97237 0.30135 2.72123 1.94347 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.97261 0.30132 2.72133 1.94350 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.44454 2.51483 1.64917 2.45581 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.97261 0.30132 2.72133 1.94350 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.97254 0.30133 2.72130 1.94349 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.97246 0.30134 2.72127 1.94348 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.73308 1.73353 2.45747 0.39650 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.73303 1.73353 2.45746 0.39651 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.73299 1.73352 2.45744 0.39651 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.97224 0.30137 2.72117 1.94344 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.73293 1.73352 2.45742 0.39652 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.44458 2.51470 1.64916 2.45562 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.44324 3.00929 0.20881 2.95176 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.73288 1.73352 2.45740 0.39653 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.97211 0.30139 2.72111 1.94342 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.87134 1.06777 2.41012 0.88551 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.95516 1.20995 2.15324 1.60480 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.00378 1.97026 2.11331 0.98551 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.00378 1.97026 2.11331 0.98551 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.00378 1.97026 2.11331 0.98551 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.63908 2.03544 1.15488 1.02131 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.89732 2.34949 1.04002 1.94159 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.21722 2.88754 0.26109 2.73083 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.45070 2.63677 1.57035 2.48587 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.16048 0.24541 2.84027 2.14727 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.68317 1.91819 2.32879 0.37489 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.45069 2.63680 1.57035 2.48591 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.21728 2.88761 0.26107 2.73092 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.45068 2.63683 1.57035 2.48595 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.45068 2.63685 1.57035 2.48597 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.45067 2.63687 1.57035 2.48601 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.21739 2.88775 0.26103 2.73109 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.21744 2.88781 0.26101 2.73116 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.21749 2.88788 0.26099 2.73125 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.68375 1.91824 2.32898 0.37479 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.21764 2.88806 0.26094 2.73149 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.21775 2.88819 0.26090 2.73165 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.16263 0.24517 2.84116 2.14769 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.45050 2.63746 1.57037 2.48678 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.45045 2.63763 1.57037 2.48701 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.68557 1.91838 2.32959 0.37449 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.45029 2.63816 1.57039 2.48770 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.58095 0.26379 3.15160 2.17704 55 C - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 56 1.92923 0.54455 2.46235 1.66388 56 C - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.16705 1.87180 57 2.69182 1.91889 2.33168 0.37347 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 3.18072 0.24313 2.84864 2.15117 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.69836 1.91942 2.33386 0.37241 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.70424 1.91989 2.33581 0.37146 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.21508 0.23936 2.86263 2.15765 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //