INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3926 ACC RF03560 DESC mir-3926 microRNA precursor family STATES 193 NODES 38 CLEN 63 W 77 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 22:37:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03560/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.355469 CKSUM 4284804115 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.00 NC 80.30 EFP7GF -6.0634 0.72702 ECMLC 0.59082 -5.68772 3.85390 1600000 336865 0.003562 ECMGC 0.50078 -13.99547 -1.27060 1600000 234170 0.001708 ECMLI 0.57637 -4.79181 4.69880 1600000 284986 0.004211 ECMGI 0.52484 -9.69625 1.64377 1600000 153765 0.002601 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 77 97 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 IL 1 1 2 1 6 1 1 79 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 1 79 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 63 G C - - MP 3 2 3 7 6 2 2 77 97 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 4 2 3 7 6 1 1 76 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 1 76 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 74 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 1 77 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 1 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 62 G C - - MP 9 8 6 13 6 2 2 75 95 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 10 8 6 13 6 1 1 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 1 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 61 A U - - MP 15 14 6 19 6 2 2 73 93 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 16 14 6 19 6 1 1 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 60 G C - - MP 21 20 6 25 6 2 2 71 91 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 22 20 6 25 6 1 1 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 59 C G - - MP 27 26 6 31 6 2 2 69 89 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 28 26 6 31 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 58 U A - - MP 33 32 6 37 6 2 2 67 87 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 34 32 6 37 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 57 G C - - MP 39 38 6 43 6 2 2 65 85 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 40 38 6 43 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 56 G C - - MP 45 44 6 49 6 2 2 63 83 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 46 44 6 49 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 55 C G - - MP 51 50 6 55 6 2 2 61 81 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 52 50 6 55 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 54 C G - - MP 57 56 6 61 6 2 2 59 79 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 58 56 6 61 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 53 A U - - MP 63 62 6 67 6 2 2 57 77 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 64 62 6 67 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 52 A U - - MP 69 68 6 73 6 2 2 55 75 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 70 68 6 73 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 51 A U - - MP 75 74 6 79 6 2 2 53 73 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 76 74 6 79 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 50 A U - - MP 81 80 6 85 6 2 2 51 71 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 82 80 6 85 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 15 49 A U - - MP 87 86 6 91 6 2 2 49 69 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 88 86 6 91 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 16 48 G C - - MP 93 92 6 97 6 2 2 47 67 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 94 92 6 97 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 17 47 C G - - MP 99 98 6 103 6 2 2 45 64 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 100 98 6 103 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 46 A U - - MP 105 104 6 109 6 2 2 43 62 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 106 104 6 109 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 19 45 G C - - MP 111 110 6 115 6 2 2 41 60 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 112 110 6 115 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 44 G C - - MP 117 116 6 121 6 2 2 39 58 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 118 116 6 121 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 43 C G - - MP 123 122 6 127 6 2 2 37 56 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 42 A U - - MP 129 128 6 133 6 2 2 35 54 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 41 G C - - MP 135 134 6 139 6 2 2 33 52 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 40 A U - - MP 141 140 6 145 6 2 2 31 50 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 142 140 6 145 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 39 G C - - MP 147 146 6 151 6 2 2 29 48 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 148 146 6 151 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 26 38 A U - - MP 153 152 6 157 6 2 2 27 46 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 154 152 6 157 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 27 37 C G - - MP 159 158 6 163 4 2 2 25 44 -6.691 -6.898 -0.064 -5.312 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 160 158 6 163 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 27 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - u - - - ML 165 164 6 167 3 1 1 23 41 -7.728 -0.024 -6.382 -0.252 -0.816 0.255 0.484 D 166 164 6 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - u - - - ML 168 167 3 170 3 1 1 21 40 -7.728 -0.024 -6.382 -0.523 0.368 -1.277 0.679 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 171 170 3 173 3 1 1 20 39 -7.728 -0.024 -6.382 -1.063 -1.137 -1.771 1.472 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - u - - - ML 174 173 3 176 3 1 1 19 38 -7.728 -0.024 -6.382 0.518 -0.741 -0.932 0.532 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - u - - - ML 177 176 3 179 3 1 1 18 36 -7.728 -0.024 -6.382 0.518 -0.741 -0.932 0.532 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - u - - - ML 180 179 3 182 3 1 1 16 35 -7.728 -0.024 -6.382 0.518 -0.741 -0.932 0.532 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.728 -0.024 -6.382 1.594 -1.902 -1.581 -1.401 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - a - - - ML 186 185 3 188 3 1 1 13 32 -7.728 -0.024 -6.382 0.657 -1.201 0.413 -0.607 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - a - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 0.571 0.172 -0.962 -0.195 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3926 ACC RF03560 DESC mir-3926 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 22:37:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03560/CM NSEQ 2 EFFN 1.777344 CKSUM 4284804115 STATS LOCAL MSV -7.9651 0.72702 STATS LOCAL VITERBI -9.2200 0.72702 STATS LOCAL FORWARD -2.8982 0.72702 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55198 1.31382 1.24463 1.46389 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.41739 2.95238 0.21826 2.90558 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.41070 2.94557 0.22013 2.89569 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.48176 2.44008 1.59359 2.38642 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.40453 2.93929 0.22186 2.88661 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.91214 0.32267 2.64535 1.89416 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.66795 1.68377 2.37919 0.42724 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.40118 2.93588 0.22281 2.88168 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.40059 2.93527 0.22298 2.88081 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.90660 0.32350 2.64300 1.89329 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.90589 0.32360 2.64270 1.89318 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.48314 2.43664 1.59337 2.38095 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.48319 2.43653 1.59336 2.38077 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.48322 2.43643 1.59335 2.38063 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.48325 2.43636 1.59335 2.38051 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.48328 2.43630 1.59334 2.38041 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.39861 2.93326 0.22354 2.87791 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.90353 0.32396 2.64170 1.89280 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.48333 2.43617 1.59333 2.38021 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.39839 2.93304 0.22361 2.87758 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.39834 2.93299 0.22362 2.87751 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.90310 0.32402 2.64152 1.89274 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.48336 2.43608 1.59333 2.38007 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.39823 2.93288 0.22365 2.87736 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.48337 2.43606 1.59333 2.38004 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.39819 2.93284 0.22366 2.87730 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.48338 2.43604 1.59333 2.38001 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.90285 0.32406 2.64141 1.89270 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.62093 2.01604 1.16711 1.02767 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.84290 1.08171 2.37805 0.89185 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.34104 2.35184 2.84555 0.28705 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.00934 1.95362 2.09501 0.99233 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.00934 1.95362 2.09502 0.99233 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.00934 1.95362 2.09501 0.99233 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.21345 2.94778 2.70095 2.62270 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.90490 2.31877 1.05296 1.90974 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.96305 1.22239 2.12981 1.58529 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.16585 2.80755 0.28088 2.66106 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.60855 1.85459 2.25091 0.40866 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.08898 0.26225 2.76297 2.10348 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.60860 1.85460 2.25092 0.40865 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.08910 0.26224 2.76302 2.10350 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.60868 1.85460 2.25095 0.40864 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.16596 2.80768 0.28083 2.66123 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.08939 0.26220 2.76314 2.10356 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.08953 0.26219 2.76319 2.10358 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.60897 1.85462 2.25104 0.40859 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.16615 2.80791 0.28076 2.66153 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.09017 0.26211 2.76345 2.10371 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.60941 1.85465 2.25118 0.40851 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.60962 1.85466 2.25125 0.40847 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.60988 1.85468 2.25133 0.40843 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.61020 1.85470 2.25143 0.40837 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.61060 1.85473 2.25156 0.40830 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.16723 2.80919 0.28034 2.66319 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.16755 2.80958 0.28021 2.66370 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.09600 0.26139 2.76582 2.10484 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.09779 0.26117 2.76654 2.10519 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.48616 2.55782 1.52046 2.41988 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.17013 2.81267 0.27921 2.66771 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.10777 0.25996 2.77056 2.10711 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.62254 1.85551 2.25535 0.40621 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 3.12412 0.25800 2.77710 2.11023 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 3.13978 0.25616 2.78330 2.11318 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //