INFERNAL1/a [1.1.5 | Sep 2023] NAME Flavi_ISFV_repeat_Ra ACC RF03544 DESC Insect-Specific Flavivirus 3' UTR repeats Ra STATES 183 NODES 49 CLEN 58 W 99 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:05:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03544/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 30 EFFN 8.111572 CKSUM 3720150185 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 46.80 NC 39.30 EFP7GF -17.3847 0.71911 ECMLC 0.53446 -8.26081 3.06652 1600000 510981 0.002348 ECMGC 0.39479 -20.61904 -6.43237 1600000 108251 0.003695 ECMLI 0.53223 -6.86188 3.68693 1600000 329224 0.003645 ECMGI 0.41407 -16.31001 -3.32725 1600000 86445 0.004627 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 149 -8.410 -8.617 -0.019 -7.032 IL 1 1 2 1 4 1 22 101 151 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 100 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 22 99 149 -9.359 -0.008 -8.013 -0.195 -1.153 1.084 -0.844 D 4 2 3 5 3 0 16 97 147 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 99 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 21 98 148 -9.359 -0.008 -8.013 -0.670 1.142 -1.763 -0.202 D 7 5 3 8 3 0 15 96 146 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 98 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 20 97 147 -9.359 -0.008 -8.013 -0.855 1.248 -1.468 -0.493 D 10 8 3 11 3 0 14 95 145 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 97 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 19 96 146 -9.690 -0.007 -8.008 -0.171 1.411 -3.030 -1.597 D 13 11 3 14 3 0 14 94 145 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 18 96 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 65 - A - - MR 15 14 3 17 3 1 18 95 145 -9.690 -0.007 -8.008 1.724 -2.875 -1.321 -2.648 D 16 14 3 17 3 0 12 93 143 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 95 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 64 - C - - MR 18 17 3 20 3 1 17 94 144 -9.690 -0.007 -8.008 -2.331 1.817 -3.658 -2.338 D 19 17 3 20 3 0 11 92 142 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 94 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 63 - C - - MR 21 20 3 23 3 1 17 93 143 -9.690 -0.007 -8.008 -3.133 1.833 -2.786 -2.488 D 22 20 3 23 3 0 10 91 141 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 93 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 62 - C - - MR 24 23 3 26 3 1 16 92 142 -9.690 -0.007 -8.008 -3.430 1.887 -3.926 -2.818 D 25 23 3 26 3 0 9 90 140 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 92 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 61 - C - - MR 27 26 3 29 5 1 15 91 141 -8.370 -0.016 -8.185 -8.398 -9.289 -3.430 1.887 -3.926 -2.818 D 28 26 3 29 5 0 8 89 139 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 12 91 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 60 g c - - MP 30 29 3 34 6 2 14 90 140 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -0.733 -1.335 -2.897 1.010 -2.847 -3.707 2.153 -3.188 -2.992 2.181 -3.515 -0.817 0.870 -2.996 -0.811 -2.039 ML 31 29 3 34 6 1 10 88 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 9 88 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 6 85 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 11 89 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 11 89 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 59 C G - - MP 36 35 6 40 6 2 12 88 138 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -7.487 -7.635 -6.588 -3.862 -4.952 -6.618 3.939 -6.172 -6.964 -3.831 -6.653 -5.828 -1.967 -7.387 -2.974 -5.768 ML 37 35 6 40 6 1 9 86 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 8 86 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 6 84 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 10 87 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 10 87 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 58 G C - - MP 42 41 6 46 4 2 10 86 136 -8.410 -8.617 -0.019 -7.032 -7.188 -4.345 -8.104 -1.598 -8.497 -5.637 -3.249 -8.136 -5.697 3.916 -5.928 -2.199 -3.612 -5.980 -5.515 -6.953 ML 43 41 6 46 4 1 8 85 135 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 6 84 134 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 5 83 133 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 9 86 136 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 9 85 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - C - - - ML 48 47 6 50 3 1 8 84 134 -9.359 -0.008 -8.013 -3.097 1.716 -3.996 -0.903 D 49 47 6 50 3 0 5 82 132 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 8 84 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - A - - - ML 51 50 3 53 3 1 7 83 133 -9.359 -0.008 -8.013 1.868 -3.577 -3.519 -2.488 D 52 50 3 53 3 0 4 81 131 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 7 83 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - A - - - ML 54 53 3 56 3 1 6 82 132 -9.359 -0.008 -8.013 1.956 -4.922 -4.373 -4.636 D 55 53 3 56 3 0 4 80 130 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 6 82 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - G - - - ML 57 56 3 59 3 1 5 81 131 -9.359 -0.008 -8.013 -3.166 -4.340 1.878 -2.605 D 58 56 3 59 3 0 4 79 130 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 5 82 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - G - - - ML 60 59 3 62 2 1 4 80 130 -9.921 -0.001 -3.968 -5.461 1.954 -4.703 D 61 59 3 62 2 0 3 79 129 -8.445 -0.004 IL 62 62 3 62 2 1 5 80 131 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 63 62 3 64 129 0 3 79 129 [ BEGL 19 ] - - - - - - S 64 63 1 65 4 0 0 62 112 -0.023 -7.749 -7.157 -7.797 [ MATP 20 ] 13 40 A U - - MP 65 64 1 69 6 2 2 62 112 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -4.944 -3.592 -4.986 3.024 -6.365 -6.289 -1.628 -5.270 -4.850 2.663 -5.359 -1.030 -1.825 -5.385 -3.590 -3.749 ML 66 64 1 69 6 1 1 60 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 1 69 6 1 1 60 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 1 69 6 0 0 56 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 61 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 61 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 39 a u - - MP 71 70 6 75 6 2 2 60 110 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -4.936 -3.579 -4.972 2.986 -6.340 -6.229 -1.594 -5.267 -4.847 2.705 -5.348 -1.024 -1.794 -5.343 -3.558 -3.741 ML 72 70 6 75 6 1 1 58 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 58 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 54 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 59 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 59 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 38 G C - - MP 77 76 6 81 6 2 2 58 108 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -4.697 -3.272 -4.616 1.830 -5.816 -5.246 -0.928 -5.154 -4.738 3.243 -5.080 0.509 -1.173 -4.559 -2.931 -3.512 ML 78 76 6 81 6 1 1 56 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 56 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 52 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 57 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 57 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 37 G C - - MP 83 82 6 87 6 2 2 56 106 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -4.738 -3.230 -4.622 0.784 -5.702 -4.926 -0.780 -5.265 -4.774 3.501 -5.031 -0.064 -1.048 -1.405 -2.799 -3.579 ML 84 82 6 87 6 1 1 54 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 54 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 50 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 55 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 55 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 36 a u - - MP 89 88 6 93 6 2 2 54 104 -9.847 -9.787 -0.043 -8.563 -5.434 -9.238 -0.740 -1.400 -2.338 2.164 -2.381 -3.167 1.102 -2.705 -1.316 1.735 -2.979 -0.351 0.751 -2.455 -0.156 -1.579 ML 90 88 6 93 6 1 1 52 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 51 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 49 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 53 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 53 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 35 c g - - MP 95 94 6 99 4 2 2 52 102 -8.362 -8.569 -0.093 -4.138 -1.923 -2.125 -2.118 1.203 -1.337 -2.969 2.080 -1.680 -0.453 1.360 -1.708 -0.779 1.005 -2.259 0.165 -1.372 ML 96 94 6 99 4 1 1 51 101 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 49 99 -5.361 -4.390 -2.257 -0.476 -0.169 -0.487 -0.787 0.862 D 98 94 6 99 4 0 0 48 98 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 52 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 52 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 101 100 6 103 3 1 1 50 100 -9.242 -0.008 -7.896 1.061 -1.870 0.022 -0.680 D 102 100 6 103 3 0 0 43 94 -7.713 -3.226 -0.171 IL 103 103 3 103 3 1 1 51 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - u - - - ML 104 103 3 106 3 1 1 49 99 -1.482 -1.049 -2.653 -0.069 -0.781 -0.312 0.730 D 105 103 3 106 3 0 0 36 87 -7.713 -3.226 -0.171 IL 106 106 3 106 3 1 1 51 101 -0.527 -2.321 -3.237 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - u - - - ML 107 106 3 109 3 1 1 20 38 -0.729 -1.816 -3.148 -0.534 -0.226 -0.900 0.940 D 108 106 3 109 3 0 0 17 35 -9.465 -1.953 -0.434 IL 109 109 3 109 3 1 1 19 38 -3.183 -0.196 -5.883 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - c - - - ML 110 109 3 112 3 1 1 18 36 -8.764 -0.012 -7.418 -0.116 0.186 0.014 -0.106 D 111 109 3 112 3 0 0 16 34 -9.380 -2.228 -0.349 IL 112 112 3 112 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - c - - - ML 113 112 3 115 3 1 1 17 35 -8.905 -0.011 -7.559 0.096 0.309 -0.471 -0.043 D 114 112 3 115 3 0 0 15 33 -9.094 -4.607 -0.063 IL 115 115 3 115 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - a - - - ML 116 115 3 118 3 1 1 15 34 -8.905 -0.011 -7.559 0.775 -0.891 -0.468 0.038 D 117 115 3 118 3 0 0 14 32 -9.094 -2.276 -0.337 IL 118 118 3 118 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - u - - - ML 119 118 3 121 3 1 1 14 32 -9.004 -0.597 -1.569 -0.120 -0.105 -0.845 0.672 D 120 118 3 121 3 0 0 13 32 -8.833 -0.167 -3.225 IL 121 121 3 121 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - c - - - ML 122 121 3 124 3 1 1 12 31 -8.926 -0.137 -3.502 -0.579 0.568 -0.599 0.249 D 123 121 3 124 3 0 0 11 30 -9.044 -2.970 -0.200 IL 124 124 3 124 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - u - - - ML 125 124 3 127 2 1 1 1 1 * 0.000 -0.500 0.449 -1.298 0.605 D 126 124 3 127 2 0 0 0 0 * 0.000 IL 127 127 3 127 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 128 127 3 -1 0 0 0 0 0 [ BEGR 36 ] - - - - - - S 129 63 1 130 5 0 0 30 48 -8.370 -0.016 -8.185 -8.398 -9.289 IL 130 130 2 130 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 41 57 G C - - MP 131 130 2 135 6 2 2 30 48 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -5.969 -3.963 -6.146 0.745 -7.240 -5.591 -2.235 -6.536 -5.348 3.738 -5.648 -1.663 -2.504 -5.489 -4.320 -5.003 ML 132 130 2 135 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 2 135 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 2 135 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 42 56 G C - - MP 137 136 6 141 6 2 2 28 46 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -4.808 -3.377 -4.760 1.223 -6.022 -5.471 -1.147 -5.241 -4.796 3.171 -5.176 1.722 -1.378 -4.774 -3.144 -3.625 ML 138 136 6 141 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 43 55 G C - - MP 143 142 6 147 6 2 2 26 44 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -7.188 -4.345 -8.104 -1.598 -8.497 -5.637 -3.249 -8.136 -5.697 3.916 -5.928 -2.199 -3.612 -5.980 -5.515 -6.953 ML 144 142 6 147 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 54 u a - - MP 149 148 6 153 6 2 2 24 42 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -3.424 -3.429 -3.529 1.508 -2.951 -4.347 1.519 -3.487 -3.522 0.279 -4.053 -1.528 2.714 -3.693 -0.157 -0.982 ML 150 148 6 153 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 53 G C - - MP 155 154 6 159 6 2 2 22 40 -9.847 -9.787 -0.013 -8.563 -8.843 -9.238 -4.468 0.381 -4.335 0.750 -5.388 -4.785 -0.529 -4.984 -4.602 3.331 -4.867 -0.285 -0.792 -1.636 -2.528 -3.302 ML 156 154 6 159 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 52 u a - - MP 161 160 6 165 4 2 2 20 38 -8.410 -8.617 -0.019 -7.032 -4.033 -4.169 -4.042 -0.819 1.849 -4.698 0.760 -3.940 0.465 -0.808 -4.537 -2.529 2.677 -4.267 0.168 -3.105 ML 162 160 6 165 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 167 166 6 169 3 1 1 16 35 -9.359 -0.008 -8.013 -2.194 -1.762 -1.630 1.662 D 168 166 6 169 3 0 0 17 35 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 170 169 3 172 3 1 1 15 34 -9.359 -0.008 -8.013 0.013 -3.240 1.454 -2.774 D 171 169 3 172 3 0 0 16 34 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - - - ML 173 172 3 175 3 1 1 14 32 -9.359 -0.008 -8.013 1.956 -4.922 -4.373 -4.636 D 174 172 3 175 3 0 0 15 33 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - C - - - ML 176 175 3 178 3 1 1 12 31 -9.359 -0.008 -8.013 -4.539 1.944 -5.136 -3.613 D 177 175 3 178 3 0 0 13 32 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - G - - - ML 179 178 3 181 2 1 1 1 1 * 0.000 -1.133 -1.941 1.529 -1.333 D 180 178 3 181 2 0 0 0 0 * 0.000 IL 181 181 3 181 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 182 181 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Flavi_ISFV_repeat_Ra ACC RF03544 DESC Insect-Specific Flavivirus 3' UTR repeats Ra LENG 58 MAXL 124 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:05:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03544/CM NSEQ 30 EFFN 17.523193 CKSUM 3720150185 STATS LOCAL MSV -7.5410 0.71911 STATS LOCAL VITERBI -8.3971 0.71911 STATS LOCAL FORWARD -3.9377 0.71911 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55054 1.08139 1.26343 1.79540 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 0.00000 * 1 1.59012 2.29407 0.53454 2.21362 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 2 1.99022 0.48689 2.85154 1.65524 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 3 2.16567 0.41427 2.50788 1.94447 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 4 1.48767 0.31261 4.53816 3.44594 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 5 1.65810 1.08962 1.03343 2.14241 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 6 5.90087 0.01431 5.90738 4.73851 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 7 4.25640 5.35220 0.02387 5.36464 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 8 4.39123 0.15150 4.95877 2.11053 8 C - - , 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 9 0.06004 4.57988 4.60506 3.26966 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 10 0.01250 5.73573 5.31177 5.45802 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 11 4.41420 5.30327 0.05701 3.26132 11 G - - , 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 12 4.88178 6.02910 0.01464 5.39542 12 G - - , 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 13 0.54278 4.83127 0.91615 4.52486 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 14 0.56603 4.79444 0.88487 4.49349 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 15 1.40553 4.00814 0.33582 3.82377 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 16 2.41661 3.95368 0.17462 2.96009 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 17 0.83294 2.12163 1.16725 2.00862 17 a - - < 1.38629 1.38629 1.38629 1.38629 0.04649 5.29656 3.20841 1.46634 0.26236 1.09861 0.40547 18 1.77061 1.02762 1.26192 1.66704 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.06456 5.26051 2.85893 1.46634 0.26236 2.30956 0.10459 19 0.55781 3.34081 1.31820 2.08332 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01102 5.20696 5.20696 1.46634 0.26236 3.00124 0.05100 20 1.50917 2.05945 1.56984 0.81350 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.85467 0.92030 1.73627 1.21703 0.35113 3.00124 0.05100 21 1.98649 1.53644 2.07693 0.64939 27 U - - _ 1.38629 1.38629 1.38629 1.38629 2.02406 0.57902 1.17950 0.02341 3.76631 0.89694 0.52394 22 1.58368 1.14167 1.29783 1.59765 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01603 4.83429 4.83429 1.46634 0.26236 1.57627 0.23161 23 1.35807 1.05820 1.71451 1.53381 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01432 4.94626 4.94626 1.46634 0.26236 4.12716 0.01626 24 0.77329 2.16351 1.73176 1.39993 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01432 4.94626 4.94626 1.46634 0.26236 1.62160 0.22013 25 1.54404 1.43631 2.04675 0.86863 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.48842 5.02321 0.96806 1.46634 0.26236 0.04021 3.23378 26 2.08076 0.85835 1.80205 1.25056 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.11421 4.96253 2.29327 1.46634 0.26236 2.20333 0.11702 27 1.93562 0.96268 2.50767 0.93563 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01491 4.90615 4.90615 1.46634 0.26236 0.03006 3.51944 28 1.64917 1.62401 0.92434 1.54228 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 29 1.90827 1.31151 1.81086 0.87051 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 30 4.05146 0.20065 3.77300 1.95602 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 31 4.05794 0.46997 3.81006 1.09199 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 32 4.65805 0.91863 4.55558 0.54310 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 33 4.66801 0.95129 4.57417 0.52079 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 34 2.22381 5.10253 0.12884 5.01892 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 35 1.96422 4.29270 0.18727 4.08379 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 36 4.26168 5.36179 0.02369 5.37829 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 37 1.57187 1.99477 2.99538 0.50041 44 U - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 38 1.67161 3.72482 0.30717 2.94861 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 39 4.77063 1.08192 2.12444 0.62908 46 U - - < 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 40 3.64289 2.90659 2.53344 0.17462 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 41 1.36063 4.41079 0.33524 4.12328 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 42 0.01250 5.73573 5.31177 5.45802 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 43 5.30025 0.01803 5.62411 4.68167 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 44 2.41545 2.92261 0.25897 2.46471 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 45 0.13913 4.81663 2.19706 4.54096 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 46 3.83324 0.18169 3.54053 2.15848 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 47 0.63775 3.17467 1.71542 1.38701 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 48 5.43379 0.02962 5.28477 3.92433 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 49 4.32017 0.53985 4.09546 0.94877 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 50 5.17436 0.13740 4.97346 2.15589 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 51 5.41920 0.02979 5.27630 3.92181 58 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 52 4.94940 6.06613 0.01233 5.86021 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 53 1.95075 1.02017 1.03985 1.93939 60 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 54 4.24838 0.04628 4.44038 3.95560 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 55 4.24838 0.04628 4.44038 3.95560 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 56 4.15804 0.07621 3.32849 3.82157 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 57 3.17029 0.08280 4.35660 3.70299 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.01007 5.29656 5.29656 1.46634 0.26236 1.09861 0.40547 58 0.15006 3.83861 2.35688 3.76785 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.00505 5.29154 * 1.46634 0.26236 0.00000 * //