INFERNAL1/a [1.1.5 | Sep 2023] NAME Flavi_ISFV_repeat_Rb ACC RF03543 DESC Insect-Specific Flavivirus 3' UTR repeats Rb STATES 142 NODES 34 CLEN 46 W 71 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:05:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03543/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 5.821533 CKSUM 4150418770 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 57.10 NC 39.50 EFP7GF -14.5065 0.71956 ECMLC 0.67517 -5.64982 3.47705 1600000 569361 0.002108 ECMGC 0.38013 -21.28451 -4.64784 1600000 223137 0.001793 ECMLI 0.64466 -4.89550 4.26832 1600000 441354 0.002719 ECMGI 0.41369 -16.26864 -2.11922 1600000 139372 0.002870 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 101 -7.875 -9.121 -0.040 -5.574 IL 1 1 2 1 4 1 7 73 103 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 9 73 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 53 - A - - MR 3 2 3 5 3 1 10 71 101 -9.325 -0.009 -7.643 1.455 -2.689 -0.158 -2.275 D 4 2 3 5 3 0 3 70 100 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 8 72 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 52 - C - - MR 6 5 3 8 5 1 10 70 100 -8.016 -0.020 -7.832 -8.044 -8.935 -3.973 1.917 -4.665 -3.053 D 7 5 3 8 5 0 2 69 99 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 6 71 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 51 c g - - MP 9 8 3 13 6 2 9 69 99 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -5.623 -5.799 -5.068 -2.006 2.541 -5.290 2.999 -4.392 -5.146 -1.932 -5.321 -4.016 -0.154 -5.534 -1.201 -3.957 ML 10 8 3 13 6 1 3 68 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 68 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 65 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 69 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 69 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 50 C G - - MP 15 14 6 19 6 2 8 67 97 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -6.768 -6.862 -6.036 -3.052 -4.442 -6.157 3.900 -5.512 -6.272 -2.995 -6.173 -4.964 -1.276 -6.692 -2.321 -5.075 ML 16 14 6 19 6 1 2 66 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 66 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 67 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 67 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 49 C G - - MP 21 20 6 25 4 2 6 65 95 -7.875 -9.121 -0.040 -5.574 -6.768 -6.862 -6.036 -3.052 -4.442 -6.157 3.900 -5.512 -6.272 -2.995 -6.173 -4.964 -1.276 -6.692 -2.321 -5.075 ML 22 20 6 25 4 1 1 64 95 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 2 64 94 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 0 62 92 -12.737 -14.007 -2.036 -0.404 IL 25 25 5 25 4 1 2 65 95 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 4 65 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - A - - MR 27 26 6 29 3 1 5 63 93 -9.325 -0.009 -7.643 1.932 -4.317 -3.793 -4.030 D 28 26 6 29 3 0 0 62 92 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 3 64 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - A - - MR 30 29 3 32 3 1 5 62 92 -9.325 -0.009 -7.643 1.124 -2.594 0.509 -2.108 D 31 29 3 32 3 0 0 61 91 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 2 63 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - a - - MR 33 32 3 35 5 1 5 61 91 -8.016 -0.020 -7.832 -8.044 -8.935 0.689 -0.690 -0.693 0.202 D 34 32 3 35 5 0 0 60 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 1 62 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 4 45 C G - - MP 36 35 3 40 6 2 5 60 90 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -6.768 -6.862 -6.036 -3.052 -4.442 -6.157 3.900 -5.512 -6.272 -2.995 -6.173 -4.964 -1.276 -6.692 -2.321 -5.075 ML 37 35 3 40 6 1 1 59 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 1 59 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 56 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 60 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 60 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 44 A U - - MP 42 41 6 46 6 2 5 58 88 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -5.706 -4.438 -5.320 3.870 -6.903 -8.221 -2.511 -5.248 -5.466 -1.018 -6.086 -1.725 -2.871 -6.967 -4.423 -4.261 ML 43 41 6 46 6 1 1 57 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 57 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 54 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 58 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 58 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 43 G C - - MP 48 47 6 52 6 2 4 56 86 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -4.907 -3.401 -4.980 0.121 -6.308 -5.716 -1.510 -5.280 -4.692 3.130 -5.143 2.331 -1.719 -5.119 -3.501 -3.758 ML 49 47 6 52 6 1 1 55 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 55 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 53 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 56 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 56 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 42 U G - - MP 54 53 6 58 4 2 2 54 84 -8.022 -8.229 -0.256 -2.686 -5.764 -5.750 -5.170 -2.000 -3.615 -5.404 0.677 -4.480 -5.231 -2.039 -5.398 -3.750 -0.324 -5.715 3.666 -4.052 ML 55 53 6 58 4 1 1 54 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 54 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 52 82 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 1 55 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 1 55 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - C - - - ML 60 59 6 62 3 1 1 52 83 -9.115 -0.011 -7.433 -1.667 1.225 -2.579 0.240 D 61 59 6 62 3 0 0 51 81 -6.998 -0.240 -2.781 IL 62 62 3 62 3 1 1 53 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 41 - U - - MR 63 62 3 65 5 1 1 51 82 -8.016 -0.020 -7.832 -8.044 -8.935 -1.958 -0.202 -2.750 1.446 D 64 62 3 65 5 0 0 50 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 52 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 40 C G - - MP 66 65 3 70 6 2 2 51 81 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -6.272 -6.382 -5.694 -2.542 -0.519 -5.898 3.799 -5.155 -5.858 -2.434 -5.893 -4.486 -0.854 -6.229 -1.971 -4.664 ML 67 65 3 70 6 1 1 49 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 49 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 46 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 50 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 50 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 39 C G - - MP 72 71 6 76 4 2 2 49 79 -1.425 -8.229 -0.703 -6.643 -4.525 -4.649 -4.376 -1.135 0.253 0.876 3.313 -4.062 -4.429 -1.076 -4.783 -2.925 0.123 -4.673 -1.079 -3.368 ML 73 71 6 76 4 1 1 47 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 46 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 45 75 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 47 77 -1.797 -4.889 -0.572 -7.375 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 48 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - u - - - ML 78 77 6 80 3 1 1 46 76 -8.983 -0.010 -7.637 -0.593 0.344 -1.895 0.847 D 79 77 6 80 3 0 0 44 74 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 47 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - A - - - ML 81 80 3 83 3 1 1 45 75 -9.325 -0.009 -7.643 1.932 -4.317 -3.793 -4.030 D 82 80 3 83 3 0 0 43 73 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 45 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 38 - U - - MR 84 83 3 86 3 1 1 44 74 -9.325 -0.009 -7.643 -0.021 -1.640 -2.026 1.292 D 85 83 3 86 3 0 0 42 72 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 44 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 37 - G - - MR 87 86 3 89 3 1 1 43 73 -9.325 -0.009 -7.643 -0.860 -3.254 1.676 -2.747 D 88 86 3 89 3 0 0 41 71 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 43 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 36 - C - - MR 90 89 3 92 3 1 1 42 72 -9.325 -0.009 -7.643 -3.973 1.917 -4.665 -3.053 D 91 89 3 92 3 0 0 40 70 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 42 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 35 - C - - MR 93 92 3 95 5 1 1 41 71 -8.016 -0.020 -7.832 -8.044 -8.935 -3.973 1.917 -4.665 -3.053 D 94 92 3 95 5 0 0 39 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 41 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 15 34 G C - - MP 96 95 3 100 6 2 2 40 70 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -6.095 -3.856 -6.404 -0.795 -7.381 -5.351 -2.307 -6.756 -5.234 3.812 -5.507 -0.452 -2.589 -5.403 -4.437 -5.269 ML 97 95 3 100 6 1 1 38 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 38 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 35 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 39 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 39 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 33 G C - - MP 102 101 6 106 6 2 2 38 68 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -4.972 -3.344 -4.966 0.678 -6.098 -5.147 -1.187 -5.464 -4.774 3.554 -5.095 0.424 -1.441 -4.706 -3.216 -3.856 ML 103 101 6 106 6 1 1 36 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 36 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 33 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 37 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 37 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 17 32 U A - - MP 108 107 6 112 6 2 2 36 66 -9.615 -9.554 -0.015 -8.331 -8.611 -9.006 -5.713 -5.765 -5.298 -1.935 -3.850 -5.624 0.490 -4.692 -5.334 -1.818 -5.584 -3.807 3.632 -5.698 0.338 -4.027 ML 109 107 6 112 6 1 1 34 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 34 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 31 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 35 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 35 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 18 31 C G - - MP 114 113 6 118 6 2 2 34 64 -9.615 -9.554 -0.051 -5.170 -8.611 -9.006 -5.310 -5.330 -4.903 -1.408 -3.439 -5.244 3.480 -4.278 -4.932 -1.263 -5.185 -3.287 1.615 -5.302 -1.094 -3.726 ML 115 113 6 118 6 1 1 33 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 32 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 29 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 33 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 33 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 19 30 a u - - MP 120 119 6 124 4 2 2 32 62 -7.958 -2.386 -0.332 -6.579 -4.105 -3.799 -4.061 2.934 -3.321 -4.767 1.863 -3.888 -4.074 0.268 -4.510 -1.649 1.017 -4.299 -1.004 -2.968 ML 121 119 6 124 4 1 1 32 62 -4.188 -1.707 -0.937 -3.100 -0.170 -0.488 -0.788 0.863 MR 122 119 6 124 4 1 1 29 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 28 58 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 32 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 32 62 -0.883 -1.177 -5.987 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - u - - - ML 126 125 6 128 3 1 1 17 36 -8.983 -0.010 -7.637 0.351 -1.229 -0.386 0.616 D 127 125 6 128 3 0 0 17 36 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - G - - - ML 129 128 3 131 3 1 1 16 34 -1.780 -0.507 -7.637 -3.450 -4.883 1.934 -4.192 D 130 128 3 131 3 0 0 14 33 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 15 34 -2.681 -0.286 -5.381 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - G - - - ML 132 131 3 134 3 1 1 14 33 -8.983 -0.010 -7.637 -1.022 -3.354 1.709 -2.843 D 133 131 3 134 3 0 0 15 33 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - a - - - ML 135 134 3 137 3 1 1 12 31 -8.983 -0.010 -7.637 0.743 -0.602 -0.446 -0.098 D 136 134 3 137 3 0 0 13 32 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - A - - - ML 138 137 3 140 2 1 1 1 1 * 0.000 1.489 -2.710 -0.255 -2.307 D 139 137 3 140 2 0 0 0 0 * 0.000 IL 140 140 3 140 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 141 140 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Flavi_ISFV_repeat_Rb ACC RF03543 DESC Insect-Specific Flavivirus 3' UTR repeats Rb LENG 46 MAXL 115 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:05:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03543/CM NSEQ 19 EFFN 8.289307 CKSUM 4150418770 STATS LOCAL MSV -6.8934 0.71956 STATS LOCAL VITERBI -7.8086 0.71956 STATS LOCAL FORWARD -3.5243 0.71956 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54578 1.20329 1.18281 1.71349 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 0.00000 * 1 4.22676 0.10098 4.12175 2.72983 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 2 4.93161 0.04170 4.88131 3.64807 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 3 4.91973 0.04192 4.87372 3.64554 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 4 4.93489 0.04164 4.88340 3.64876 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 5 0.05444 4.73532 3.39124 4.55282 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 6 2.84021 4.07807 0.10158 3.85190 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 7 4.11264 2.49207 4.01611 0.12457 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.18241 4.72543 1.84595 1.46634 0.26236 1.09861 0.40547 8 2.85700 0.47487 3.52406 1.23405 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.02106 4.56408 4.56408 1.46634 0.26236 0.10646 2.29278 9 4.45205 0.07276 4.35567 3.08586 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 10 3.91075 0.12283 3.78414 2.61962 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.50349 0.95006 4.72543 0.36128 1.19331 1.09861 0.40547 11 1.89013 1.10056 2.93929 0.76925 13 u - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 12 0.03002 4.82493 4.44360 4.62590 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 13 3.47730 4.53999 0.05455 4.46359 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 14 2.30300 3.73524 0.16448 3.58139 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 15 4.22956 2.60354 4.10249 0.11104 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 16 3.89850 0.29823 3.73099 1.54351 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 17 0.59273 1.47586 2.77546 1.85610 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 18 1.13281 2.39144 1.65379 0.92874 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 19 4.15930 5.19750 0.03101 4.66835 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.39297 1.15175 4.72543 0.05519 2.92444 1.09861 0.40547 20 2.15974 4.03246 0.17219 3.68493 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 21 0.83914 1.82626 1.70303 1.49267 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 22 0.31665 3.67375 1.53953 3.45624 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.28313 1.43671 4.72543 0.87867 0.53672 1.09861 0.40547 23 2.09185 2.98960 1.39011 0.54959 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 24 1.63586 3.88714 0.27593 3.65551 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 25 0.20776 4.25846 1.86556 3.98233 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 26 3.81547 0.26558 3.55816 1.69980 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 27 4.62765 0.09881 4.42435 2.62664 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 28 4.55627 0.03814 4.96596 3.91457 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 29 4.55627 0.03814 4.96596 3.91457 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 30 2.03771 3.95906 0.19390 3.61754 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 31 1.41055 2.81332 3.10331 0.42911 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 32 1.97711 1.83954 0.38911 3.68971 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 33 2.45575 4.52957 0.11708 4.27566 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 34 3.11773 1.52281 3.67326 0.33933 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 35 3.10495 4.20597 0.08438 3.85451 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 36 4.05344 0.59189 3.88318 0.89460 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 37 4.79360 3.81989 4.56390 0.04148 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 38 3.93827 5.07452 0.03450 4.80607 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 39 0.87795 1.90900 1.89843 1.25060 46 a - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 40 0.56569 3.62735 0.99393 3.34317 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 41 0.03002 4.82493 4.44360 4.62590 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 42 3.91657 5.03361 0.03560 4.76246 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 43 3.92572 5.05076 0.03513 4.78073 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 44 0.82500 4.27415 0.63594 3.99517 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 45 4.55627 0.03814 4.96596 3.91457 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.01789 4.72543 4.72543 1.46634 0.26236 1.09861 0.40547 46 0.33928 3.66706 1.46907 3.44126 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.00899 4.71652 * 1.46634 0.26236 0.00000 * //