INFERNAL1/a [1.1.5 | Sep 2023] NAME Flavi_TBFV_xrRNA ACC RF03536 DESC Tick-borne Flavivirus exoribonuclease-resistant RNA element STATES 276 NODES 72 CLEN 89 W 115 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:15:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03536/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 18 EFFN 2.298340 CKSUM 178102144 NULL 0.000 0.000 0.000 0.000 GA 46.50 TC 55.40 NC 43.80 EFP7GF -9.1702 0.71898 ECMLC 0.69771 -5.19273 2.52939 1600000 262467 0.004572 ECMGC 0.45029 -14.91763 -4.35589 1600000 46507 0.008601 ECMLI 0.67365 -3.01932 4.26610 1600000 162416 0.007388 ECMGI 0.50009 -9.56411 -0.47684 1600000 37643 0.010626 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 115 145 -6.997 -8.242 -0.406 -2.093 IL 1 1 2 1 4 5 38 116 146 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 6 39 116 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - a - - MR 3 2 3 5 3 6 39 115 145 -8.184 -0.021 -6.501 0.498 0.293 -1.012 -0.207 D 4 2 3 5 3 2 35 113 143 -7.817 -2.995 -0.201 IR 5 5 3 5 3 6 38 115 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 95 - a - - MR 6 5 3 8 3 6 38 114 144 -8.184 -0.021 -6.501 0.350 0.232 -0.647 -0.132 D 7 5 3 8 3 2 34 112 143 -7.817 -0.408 -2.047 IR 8 8 3 8 3 4 37 114 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 94 - c - - MR 9 8 3 11 3 5 37 113 143 -8.480 -0.017 -6.798 -0.086 0.839 -1.396 -0.170 D 10 8 3 11 3 1 32 111 141 -6.390 -1.568 -0.620 IR 11 11 3 11 3 4 36 113 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 93 - C - - MR 12 11 3 14 3 5 36 112 142 -8.480 -0.017 -6.798 -0.858 1.156 -1.215 -0.340 D 13 11 3 14 3 1 31 110 140 -6.390 -1.568 -0.620 IR 14 14 3 14 3 4 35 112 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 92 - A - - MR 15 14 3 17 3 5 35 111 141 -8.480 -0.017 -6.798 1.288 -0.732 -1.344 -0.830 D 16 14 3 17 3 1 30 109 139 -6.390 -1.568 -0.620 IR 17 17 3 17 3 3 34 111 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 91 - G - - MR 18 17 3 20 3 4 34 110 140 -8.480 -0.017 -6.798 -0.272 -1.988 1.346 -1.405 D 19 17 3 20 3 1 29 108 138 -6.390 -1.568 -0.620 IR 20 20 3 20 3 3 34 110 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 90 - A - - MR 21 20 3 23 3 4 33 109 139 -8.480 -0.017 -6.798 1.045 -1.183 -0.437 -0.400 D 22 20 3 23 3 0 28 107 137 -6.390 -1.568 -0.620 IR 23 23 3 23 3 3 33 109 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 89 - G - - MR 24 23 3 26 3 3 32 108 138 -8.480 -0.017 -6.798 -0.272 -1.988 1.346 -1.405 D 25 23 3 26 3 0 27 106 136 -6.390 -1.568 -0.620 IR 26 26 3 26 3 2 32 108 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 88 - U - - MR 27 26 3 29 3 3 32 107 137 -8.480 -0.017 -6.798 -0.603 -0.774 -0.717 1.103 D 28 26 3 29 3 0 26 105 135 -6.390 -1.568 -0.620 IR 29 29 3 29 3 2 31 107 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 87 - g - - MR 30 29 3 32 3 3 31 106 136 -8.480 -0.017 -6.798 -0.265 -1.297 0.964 -0.303 D 31 29 3 32 3 0 26 104 134 -6.390 -1.568 -0.620 IR 32 32 3 32 3 2 30 106 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 86 - u - - MR 33 32 3 35 3 3 30 105 135 -8.480 -0.017 -6.798 -0.134 0.047 -0.538 0.451 D 34 32 3 35 3 0 25 103 133 -6.390 -1.568 -0.620 IR 35 35 3 35 3 2 29 105 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 85 - U - - MR 36 35 3 38 3 2 29 104 134 -8.480 -0.017 -6.798 -0.867 -1.092 -1.133 1.337 D 37 35 3 38 3 0 24 102 132 -6.390 -1.568 -0.620 IR 38 38 3 38 3 2 28 104 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 84 - U - - MR 39 38 3 41 3 2 28 103 133 -8.480 -0.017 -6.798 -0.641 -1.131 -1.670 1.372 D 40 38 3 41 3 0 23 100 131 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 27 103 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 83 - u - - MR 42 41 3 44 3 2 27 102 132 -2.406 -0.318 -6.798 -0.194 0.155 -1.238 0.668 D 43 41 3 44 3 0 22 97 127 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 27 103 134 -0.872 -1.327 -4.181 0.000 0.000 0.000 0.000 [ MATR 15 ] - 78 - A - - MR 45 44 3 47 3 2 27 96 122 -8.433 -0.018 -6.751 1.373 -0.978 -1.388 -0.941 D 46 44 3 47 3 0 21 95 120 -6.759 -1.039 -0.989 IR 47 47 3 47 3 1 26 97 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 77 - a - - MR 48 47 3 50 3 1 26 95 121 -8.480 -0.017 -6.798 0.734 -0.545 -0.145 -0.420 D 49 47 3 50 3 0 20 93 119 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 25 96 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 76 - a - - MR 51 50 3 53 3 1 25 94 120 -8.480 -0.017 -6.798 0.756 -1.070 0.258 -0.646 D 52 50 3 53 3 0 19 92 118 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 24 95 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 75 - a - - MR 54 53 3 56 3 1 24 93 119 -8.480 -0.017 -6.798 0.511 -0.823 0.394 -0.524 D 55 53 3 56 3 0 18 91 117 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 23 94 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 74 - a - - MR 57 56 3 59 3 1 24 92 118 -8.480 -0.017 -6.798 0.697 -0.793 -0.265 -0.045 D 58 56 3 59 3 0 17 91 116 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 22 93 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 73 - a - - MR 60 59 3 62 5 1 23 91 117 -7.211 -0.167 -7.026 -3.455 -8.130 0.236 -0.621 0.089 0.149 D 61 59 3 62 5 0 17 90 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 21 92 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 1 72 A U - - MP 63 62 3 67 6 2 25 90 116 -9.103 -9.042 -0.021 -7.819 -8.098 -8.493 -3.298 -0.962 -3.370 3.059 -3.758 -4.515 0.311 -3.585 -3.355 1.489 -3.891 -0.178 0.047 -3.704 -1.525 -2.321 ML 64 62 3 67 6 1 18 89 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 19 89 115 -7.572 -6.301 -0.865 -6.279 -1.413 -4.492 0.356 -0.842 0.409 -0.261 D 66 62 3 67 6 0 14 86 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 20 90 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 20 90 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 2 71 g c - - MP 69 68 6 73 6 2 23 88 114 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -2.609 -2.496 -2.726 0.952 -1.632 -3.544 1.809 -2.853 -2.772 1.840 -3.299 -0.072 1.792 -2.847 -0.237 -1.770 ML 70 68 6 73 6 1 18 87 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 18 86 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 13 84 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 20 88 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 20 88 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 3 70 g c - - MP 75 74 6 79 6 2 22 86 112 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -3.316 -2.425 -3.335 1.392 -3.756 -4.030 0.497 -3.743 -1.792 2.985 -3.877 0.316 0.230 -3.337 -1.385 -2.344 ML 76 74 6 79 6 1 17 85 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 17 85 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 13 82 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 19 86 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 19 86 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 4 69 G C - - MP 81 80 6 85 6 2 20 84 110 -9.164 -9.103 -0.087 -4.363 -8.160 -8.555 -3.707 -2.546 -3.703 1.452 -4.370 -4.419 0.148 -4.096 -3.752 3.051 -4.160 0.866 -0.126 -3.728 -1.811 -2.621 ML 82 80 6 85 6 1 17 83 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 16 83 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 12 80 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 18 84 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 18 84 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 5 68 c g - - MP 87 86 6 91 6 2 19 82 108 -9.099 -9.038 -0.021 -7.814 -8.094 -8.489 -1.405 -2.196 -2.363 1.056 -2.178 -3.184 1.928 -2.579 -2.416 1.659 -2.955 -0.478 1.607 -2.487 -0.139 -0.996 ML 88 86 6 91 6 1 16 81 107 -6.940 -7.286 -0.667 -1.695 -7.136 -4.665 1.131 -1.012 -0.759 -0.468 MR 89 86 6 91 6 1 15 81 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 12 78 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 17 82 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 17 82 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 6 67 g c - - MP 93 92 6 97 6 2 17 80 106 -9.164 -9.103 -0.055 -7.880 -5.221 -8.555 -3.162 -2.481 -3.185 1.514 -3.212 -3.942 1.598 -3.438 -3.311 2.497 -3.756 0.028 0.785 -3.230 -0.843 -2.160 ML 94 92 6 97 6 1 15 79 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 14 79 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 12 77 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 16 80 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 16 80 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 7 66 c g - - MP 99 98 6 103 4 2 15 78 104 -6.918 -8.163 -0.433 -2.014 -2.071 -1.457 -2.238 1.142 -2.073 -3.066 1.935 -2.473 -2.286 1.331 -1.779 -0.495 1.759 -2.369 -0.092 -1.396 ML 100 98 6 103 4 1 13 78 104 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 13 77 103 -4.803 -13.230 -1.092 -1.015 0.082 -0.799 0.615 -0.259 D 102 98 6 103 4 0 11 76 102 -12.737 -14.007 -2.036 -0.404 IL 103 103 5 103 4 1 15 78 104 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 16 78 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 65 - g - - MR 105 104 6 107 5 1 15 77 102 -6.849 -0.382 -2.245 -6.877 -7.768 -0.240 -0.857 0.445 0.311 D 106 104 6 107 5 0 11 75 101 -6.492 -0.499 -2.520 -5.550 -3.544 IR 107 107 3 107 5 1 14 77 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 8 64 g c - - MP 108 107 3 112 6 2 18 76 101 -9.012 -8.951 -0.023 -7.728 -8.007 -8.402 -2.940 -0.788 -2.991 1.303 -3.182 -3.706 1.123 -3.333 -3.105 2.724 -3.546 -0.104 0.673 -3.017 -0.906 -2.027 ML 109 107 3 112 6 1 13 74 100 -7.504 -7.850 -0.416 -2.259 -7.700 -5.229 1.118 -0.777 -0.940 -0.466 MR 110 107 3 112 6 1 11 74 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 7 71 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 13 75 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 13 75 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 9 63 c g - - MP 114 113 6 118 6 2 17 74 99 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -1.725 -0.606 -1.450 1.285 -1.870 -2.748 1.807 -2.233 -1.457 1.326 -2.535 -0.400 1.297 -2.042 0.202 -1.144 ML 115 113 6 118 6 1 11 72 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 11 72 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 7 69 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 12 73 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 13 73 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 10 62 u a - - MP 120 119 6 124 6 2 16 72 97 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -1.343 -1.961 -1.975 1.196 -1.013 -2.824 1.581 -2.260 -1.404 1.001 -2.598 -0.520 2.021 -2.117 -0.007 -1.191 ML 121 119 6 124 6 1 11 70 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 10 70 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 6 67 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 12 71 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 12 71 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 11 61 g c - - MP 126 125 6 130 6 2 14 70 95 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -3.366 -2.468 -3.349 1.488 -3.614 -4.058 1.164 -3.696 -3.513 2.806 -3.919 0.079 0.494 -3.348 -1.157 -2.315 ML 127 125 6 130 6 1 10 68 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 9 68 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 6 66 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 11 69 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 11 69 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 12 60 c g - - MP 132 131 6 136 6 2 12 68 93 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -3.751 -3.721 -3.631 0.012 -2.562 -4.199 2.920 -3.279 -3.641 0.215 -4.031 -1.732 1.465 -3.895 1.176 -2.517 ML 133 131 6 136 6 1 9 67 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 8 66 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 6 64 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 10 67 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 10 67 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 13 59 G C - - MP 138 137 6 142 4 2 11 66 91 -7.092 -7.299 -0.048 -5.713 -5.007 -3.222 -5.136 0.020 -5.606 -4.796 -0.904 -5.394 -4.497 3.696 -4.816 -0.932 -1.282 -4.641 -2.956 -4.009 ML 139 137 6 142 4 1 8 65 91 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 7 65 91 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 5 64 89 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 10 67 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 9 66 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 14 - G - - - ML 144 143 6 146 3 1 9 64 89 -8.098 -0.019 -6.752 -1.865 -3.127 1.781 -2.515 D 145 143 6 146 3 0 5 62 88 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 8 65 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 15 - C - - - ML 147 146 3 149 3 1 8 63 88 -8.098 -0.019 -6.752 -2.070 1.702 -2.901 -1.418 D 148 146 3 149 3 0 4 61 87 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 8 64 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 16 - A - - - ML 150 149 3 152 3 1 7 62 87 -8.098 -0.019 -6.752 1.771 -2.643 -2.248 -2.213 D 151 149 3 152 3 0 4 60 86 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 7 63 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 17 - g - - - ML 153 152 3 155 3 1 6 61 86 -8.098 -0.019 -6.752 0.178 -1.203 0.891 -0.786 D 154 152 3 155 3 0 3 59 85 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 6 62 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 18 - C - - - ML 156 155 3 158 3 1 5 60 85 -8.098 -0.019 -6.752 -1.311 1.465 -1.788 -0.869 D 157 155 3 158 3 0 3 58 84 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 5 61 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 19 - A - - - ML 159 158 3 161 3 1 4 59 84 -8.480 -0.017 -6.798 1.009 -1.514 0.162 -0.948 D 160 158 3 161 3 0 3 57 83 -5.620 -0.734 -1.403 IL 161 161 3 161 3 1 4 59 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 58 - A - - MR 162 161 3 164 2 1 3 58 83 -8.516 -0.004 1.458 -1.182 -1.511 -1.115 D 163 161 3 164 2 0 2 57 82 -4.432 -0.068 IR 164 164 3 164 2 1 3 58 84 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 42 ] - - - - - - B 165 164 3 166 210 0 2 57 82 [ BEGL 43 ] - - - - - - S 166 165 1 167 4 0 0 35 61 -0.042 -6.908 -6.315 -6.955 [ MATP 44 ] 20 36 C G - - MP 167 166 1 171 6 2 2 35 61 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -4.845 -4.776 -4.484 -0.984 -3.140 -4.857 3.633 -3.980 -4.545 -0.782 -4.772 -2.728 0.342 -4.894 -0.855 -3.375 ML 168 166 1 171 6 1 1 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 1 171 6 1 1 34 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 1 171 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 35 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 21 35 g c - - MP 173 172 6 177 6 2 2 33 59 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -3.577 -2.544 -3.611 2.398 -4.108 -4.549 0.302 -3.884 -3.600 2.671 -4.072 -0.134 0.002 -3.793 -1.649 -2.497 ML 174 172 6 177 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 33 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 22 34 C G - - MP 179 178 6 183 6 2 2 31 57 -9.164 -9.103 -0.149 -3.996 -5.087 -8.555 -4.845 -4.776 -4.484 -0.984 -3.140 -4.857 3.633 -3.980 -4.545 -0.782 -4.772 -2.728 0.342 -4.894 -0.855 -3.375 ML 180 178 6 183 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 23 33 c g - - MP 185 184 6 189 6 2 2 30 55 -9.037 -8.976 -0.022 -7.753 -8.032 -8.428 -2.627 -1.849 -2.778 0.568 -2.563 -2.215 2.980 -2.992 -2.820 0.892 -3.319 -0.901 0.870 -2.906 -0.569 -1.923 ML 186 184 6 189 6 1 1 28 54 -7.104 -7.450 -2.165 -0.469 -7.300 -4.830 0.155 -1.010 0.712 -0.412 MR 187 184 6 189 6 1 1 28 53 -7.379 -6.108 -2.017 -6.086 -0.585 -4.300 0.947 -0.815 -0.554 -0.283 D 188 184 6 189 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 189 189 5 189 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 190 190 6 190 5 1 1 29 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 24 32 a u - - MP 191 190 6 195 4 2 2 28 53 -6.755 -6.962 -0.061 -5.376 -3.030 -0.827 -3.117 2.777 -3.398 -4.156 0.641 -3.349 -3.115 1.730 -3.641 -0.053 0.368 -3.379 -1.190 -2.093 ML 192 190 6 195 4 1 1 27 52 -4.438 -4.620 -0.916 -1.384 0.920 -0.936 -0.304 -0.369 MR 193 190 6 195 4 1 1 26 52 -5.252 -4.281 -2.148 -0.521 -0.057 0.463 -0.758 0.097 D 194 190 6 195 4 0 0 25 51 -4.568 -4.250 -2.265 -0.520 IL 195 195 5 195 4 1 1 28 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 196 196 6 196 3 1 1 28 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 25 - u - - - ML 197 196 6 199 3 1 1 25 51 -7.843 -0.120 -3.733 -0.218 -0.418 0.062 0.431 D 198 196 6 199 3 0 0 22 48 -7.577 -3.090 -0.189 IL 199 199 3 199 3 1 1 27 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 26 - u - - - ML 200 199 3 202 3 1 1 25 50 -1.510 -0.851 -3.405 -0.330 -0.759 -0.293 0.846 D 201 199 3 202 3 0 0 17 43 -7.848 -1.242 -0.803 IL 202 202 3 202 3 1 1 25 51 -1.032 -1.031 -5.515 0.000 0.000 0.000 0.000 [ MATL 51 ] 30 - a - - - ML 203 202 3 205 3 1 1 13 32 -7.815 -0.023 -6.469 0.497 -0.133 -0.711 0.092 D 204 202 3 205 3 0 0 12 31 -7.664 -1.615 -0.581 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - a - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 0.499 -0.680 -0.055 0.001 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 [ BEGR 54 ] - - - - - - S 210 165 1 211 3 0 0 35 54 -8.098 -0.019 -6.752 IL 211 211 2 211 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 37 - A - - - ML 212 211 2 214 5 1 1 35 54 -7.211 -0.036 -7.026 -7.239 -8.130 1.771 -2.643 -2.248 -2.213 D 213 211 2 214 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 214 214 3 214 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 38 57 C G - - MP 215 214 3 219 6 2 2 34 53 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -4.769 -4.756 -4.647 -1.239 -3.711 -2.517 3.722 -4.505 -4.749 -0.991 -5.028 -2.912 -0.270 -4.949 -1.588 -3.696 ML 216 214 3 219 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 217 214 3 219 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 218 214 3 219 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 219 219 5 219 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 220 220 6 220 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 39 56 G C - - MP 221 220 6 225 6 2 2 32 51 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -5.007 -3.222 -5.136 0.020 -5.606 -4.796 -0.904 -5.394 -4.497 3.696 -4.816 -0.932 -1.282 -4.641 -2.956 -4.009 ML 222 220 6 225 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 223 220 6 225 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 224 220 6 225 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 225 225 5 225 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 226 226 6 226 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 40 55 G C - - MP 227 226 6 231 6 2 2 30 49 -9.164 -9.103 -0.020 -7.880 -8.160 -8.555 -5.007 -3.222 -5.136 0.020 -5.606 -4.796 -0.904 -5.394 -4.497 3.696 -4.816 -0.932 -1.282 -4.641 -2.956 -4.009 ML 228 226 6 231 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 229 226 6 231 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 230 226 6 231 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 231 231 5 231 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 232 232 6 232 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 41 54 G C - - MP 233 232 6 237 6 2 2 28 47 -9.164 -9.103 -0.061 -7.880 -5.021 -8.555 -5.007 -3.222 -5.136 0.020 -5.606 -4.796 -0.904 -5.394 -4.497 3.696 -4.816 -0.932 -1.282 -4.641 -2.956 -4.009 ML 234 232 6 237 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 235 232 6 237 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 236 232 6 237 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 237 237 5 237 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 238 238 6 238 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 42 53 a u - - MP 239 238 6 243 4 2 2 26 45 -6.991 -7.198 -0.052 -5.612 -2.071 -0.778 -2.260 1.950 -2.328 -3.053 1.133 -2.573 -0.337 1.572 -2.789 0.359 0.947 -2.381 -0.434 -1.425 ML 240 238 6 243 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 241 238 6 243 4 1 1 26 45 -5.272 -4.301 -1.009 -1.229 -0.073 0.486 -0.775 0.090 D 242 238 6 243 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 243 243 5 243 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 244 244 6 244 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 43 - A - - - ML 245 244 6 247 3 1 1 23 42 -8.098 -0.019 -6.752 1.604 -2.075 -1.328 -1.619 D 246 244 6 247 3 0 0 22 41 -6.174 -1.687 -0.566 IL 247 247 3 247 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 44 - a - - - ML 248 247 3 250 3 1 1 22 41 -8.098 -0.019 -6.752 0.571 -0.857 0.127 -0.200 D 249 247 3 250 3 0 0 21 40 -6.174 -1.687 -0.566 IL 250 250 3 250 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 45 - a - - - ML 251 250 3 253 3 1 1 21 40 -8.098 -0.019 -6.752 0.532 -0.427 -0.459 0.115 D 252 250 3 253 3 0 0 20 39 -6.174 -1.687 -0.566 IL 253 253 3 253 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 46 - U - - - ML 254 253 3 256 3 1 1 20 39 -8.098 -0.019 -6.752 -0.241 -0.923 -1.088 1.108 D 255 253 3 256 3 0 0 19 38 -6.174 -1.687 -0.566 IL 256 256 3 256 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 47 - G - - - ML 257 256 3 259 3 1 1 19 37 -8.098 -0.019 -6.752 -1.011 -2.506 1.615 -1.919 D 258 256 3 259 3 0 0 18 37 -6.174 -1.687 -0.566 IL 259 259 3 259 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 48 - G - - - ML 260 259 3 262 3 1 1 17 36 -8.098 -0.019 -6.752 -1.072 -2.551 1.631 -1.964 D 261 259 3 262 3 0 0 17 36 -6.174 -1.687 -0.566 IL 262 262 3 262 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 49 - U - - - ML 263 262 3 265 3 1 1 16 35 -8.098 -0.019 -6.752 -1.737 -1.690 -2.483 1.683 D 264 262 3 265 3 0 0 16 34 -6.174 -1.687 -0.566 IL 265 265 3 265 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 50 - C - - - ML 266 265 3 268 3 1 1 15 33 -8.098 -0.019 -6.752 -2.070 1.702 -2.901 -1.418 D 267 265 3 268 3 0 0 15 33 -6.174 -1.687 -0.566 IL 268 268 3 268 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 51 - G - - - ML 269 268 3 271 3 1 1 13 31 -8.098 -0.019 -6.752 -1.157 -2.614 1.652 -2.025 D 270 268 3 271 3 0 0 13 32 -6.174 -1.687 -0.566 IL 271 271 3 271 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 52 - c - - - ML 272 271 3 274 2 1 1 1 1 * 0.000 0.023 0.763 -1.343 -0.164 D 273 271 3 274 2 0 0 0 0 * 0.000 IL 274 274 3 274 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 71 ] - - - - - - E 275 274 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Flavi_TBFV_xrRNA ACC RF03536 DESC Tick-borne Flavivirus exoribonuclease-resistant RNA element LENG 89 MAXL 172 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:15:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03536/CM NSEQ 18 EFFN 4.223145 CKSUM 178102144 STATS LOCAL MSV -8.5289 0.71898 STATS LOCAL VITERBI -9.9723 0.71898 STATS LOCAL FORWARD -3.8728 0.71898 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44770 1.34536 1.19721 1.59747 1.38629 1.38629 1.38629 1.38629 0.16196 4.32969 1.99248 1.46634 0.26236 0.00000 * 1 0.27880 3.16520 1.89970 2.96643 1 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03050 4.19823 4.19823 1.46634 0.26236 0.17663 1.82070 2 1.99947 1.40486 1.16397 1.18108 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 3 1.68850 2.63656 0.41542 2.48255 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 4 1.66202 2.87355 0.37489 2.71233 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 5 1.56325 1.32782 1.43841 1.24415 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 6 1.54326 1.62014 0.78080 2.03711 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.10034 4.32969 2.49743 1.46634 0.26236 1.09861 0.40547 7 1.67565 1.26602 1.55618 1.13967 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02871 4.25806 4.25806 1.46634 0.26236 0.27771 1.41683 8 1.12834 2.00826 0.89152 2.02362 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 9 1.37547 1.32310 1.51242 1.34479 9 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 10 1.59311 1.49026 1.65451 0.96704 10 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 11 1.58167 1.98961 0.59278 2.25539 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 12 2.93220 0.59705 2.73297 1.10485 12 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 13 3.04609 3.91286 0.09312 3.84494 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 14 3.40772 4.36472 0.06794 3.91941 14 G - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 15 3.70411 0.08762 4.24191 3.10349 15 C - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 16 0.07173 3.96634 3.62742 3.74256 16 A - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 17 1.32392 2.42189 0.61332 2.26717 17 G - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 18 2.99362 0.19171 3.04384 2.56785 18 C - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 19 0.58009 2.86434 1.19928 2.50444 19 A - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 20 4.00320 0.10926 3.85068 2.74913 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 21 0.85310 2.94465 0.77754 2.78468 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 22 3.98102 0.11032 3.83824 2.74488 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.10896 4.32969 2.40730 1.46634 0.26236 1.09861 0.40547 23 2.07600 0.58170 1.83227 1.86065 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24969 4.24969 1.46634 0.26236 2.17898 0.12009 24 0.43863 2.66960 1.60446 2.46745 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.18753 4.24969 1.85326 1.46634 0.26236 2.17898 0.12009 25 1.66636 1.70373 1.25007 1.07126 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.12852 4.09600 2.26374 1.46634 0.26236 2.93498 0.05460 26 1.80460 2.09720 1.59552 0.67363 26 U - - _ 1.38629 1.38629 1.38629 1.38629 1.00890 0.68939 2.01368 0.85131 0.55662 0.78450 0.60945 27 0.99665 1.43624 1.96124 1.37681 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03478 4.06925 4.06925 1.46634 0.26236 1.09353 0.40802 28 1.01298 1.92733 1.37919 1.42901 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.26849 4.16434 1.51447 1.46634 0.26236 0.14765 1.98585 29 2.70097 1.57085 2.50376 0.44128 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.03238 4.13946 4.13946 1.46634 0.26236 2.78206 0.06391 30 1.92071 2.05335 0.50946 2.08446 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03238 4.13946 4.13946 1.46634 0.26236 0.13219 2.08891 31 3.02146 3.99146 0.09527 3.74339 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 32 3.01014 0.86848 2.74460 0.76174 35 u - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 33 3.01439 3.97972 0.09623 3.73053 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 34 0.07173 3.96634 3.62742 3.74256 37 A - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 35 4.43360 0.06001 4.28803 3.42214 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 36 3.07705 3.95913 0.08913 3.90730 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 37 3.07358 3.95390 0.08957 3.90020 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 38 3.07116 3.95026 0.08988 3.89528 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.11352 4.32969 2.36294 1.46634 0.26236 1.09861 0.40547 39 0.94005 2.09051 1.09658 1.88547 42 a - - < 1.38629 1.38629 1.38629 1.38629 0.02908 4.24525 4.24525 1.46634 0.26236 0.24672 1.52032 40 0.17128 3.34706 2.55539 3.11073 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 41 0.95683 2.09013 1.22731 1.61374 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 42 0.97745 1.69919 1.72695 1.33532 45 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 43 1.67001 2.29546 2.32633 0.48876 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 44 2.43749 3.72073 0.15905 3.33958 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 45 2.50048 3.76495 0.14992 3.38113 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 46 3.31036 3.16195 3.84775 0.10555 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 47 3.70411 0.08762 4.24191 3.10349 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 48 2.58837 3.82672 0.13814 3.43879 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 49 1.42862 0.69881 2.63605 1.65265 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 50 1.64000 1.48342 1.89734 0.84585 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 51 4.05479 0.10882 3.80559 2.75634 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 52 4.06261 0.10847 3.80951 2.75775 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 53 4.07309 0.10801 3.81474 2.75964 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 54 3.66393 3.87730 0.06240 4.25742 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 55 0.25268 2.36635 2.86601 2.62365 58 A - - , 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 56 4.00517 0.11110 3.78036 2.74714 59 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 57 1.78513 2.90728 0.34034 2.71704 60 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 58 2.51612 0.69508 1.86387 1.32756 61 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 59 0.96858 1.89582 1.38896 1.51027 62 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 60 1.58133 1.52145 1.07318 1.45251 63 g - - ) 1.38629 1.38629 1.38629 1.38629 0.39062 4.32969 1.17056 1.46634 0.26236 1.09861 0.40547 61 2.28158 0.67066 1.83451 1.48363 64 C - - ) 1.38629 1.38629 1.38629 1.38629 0.50931 3.97726 0.96666 1.46634 0.26236 0.33363 1.25992 62 1.71196 2.15266 0.94425 1.15727 65 g - - - 1.38629 1.38629 1.38629 1.38629 0.03971 3.93912 3.93912 1.46634 0.26236 0.07537 2.62277 63 1.30814 1.72345 1.05324 1.59740 66 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 64 2.28589 0.90323 1.50866 1.30250 67 c - - ) 1.38629 1.38629 1.38629 1.38629 0.17179 4.32969 1.93326 1.46634 0.26236 1.09861 0.40547 65 1.36617 1.52317 1.13638 1.58027 68 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03080 4.18870 4.18870 1.46634 0.26236 0.16728 1.87057 66 2.91249 0.57824 2.66265 1.15515 69 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 67 2.43393 0.57539 2.42128 1.34318 70 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 68 1.27702 1.37062 1.31301 1.61862 71 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 69 2.64211 1.93950 2.43211 0.36074 72 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 70 1.23449 1.87899 1.25663 1.30319 73 a - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 71 0.84461 2.03775 1.56785 1.46334 74 a - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 72 1.00936 2.04682 0.99397 1.99293 75 g - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 73 0.79309 2.30614 1.11438 2.12199 76 a - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 74 0.80625 1.77989 1.45921 1.88128 77 a - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 75 0.30450 2.18262 2.74509 2.45898 78 A - - : 1.38629 1.38629 1.38629 1.38629 0.32927 1.31909 4.32969 1.10351 0.40303 1.09861 0.40547 76 1.61350 1.19172 2.47265 0.88491 83 u - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 77 2.08269 2.55558 2.99763 0.29055 84 U - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 78 2.42395 2.52196 2.37033 0.30425 85 U - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 79 1.55852 1.28874 1.76699 1.06976 86 u - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 80 1.74004 2.57820 0.56287 1.72034 87 G - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 81 2.10029 2.12159 1.94671 0.48614 88 U - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 82 1.71719 3.24123 0.32184 2.87347 89 G - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 83 0.56202 2.44596 1.72515 1.80086 90 A - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 84 1.71719 3.24123 0.32184 2.87347 91 G - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 85 0.36181 1.95046 2.70101 2.36190 92 A - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 86 2.42386 0.39686 2.44448 1.88241 93 C - - : 1.38629 1.38629 1.38629 1.38629 0.02670 4.32969 4.32969 1.46634 0.26236 1.09861 0.40547 87 1.53336 0.64145 2.69273 1.66090 94 C - - : 1.38629 1.38629 1.38629 1.38629 0.32927 4.32969 1.31909 1.46634 0.26236 1.09861 0.40547 88 1.12543 1.12011 1.90444 1.60776 95 c - - : 1.38629 1.38629 1.38629 1.38629 0.03596 4.03638 4.03638 1.46634 0.26236 3.10457 0.04588 89 0.98963 1.05857 2.30631 1.70537 96 a - - : 1.38629 1.38629 1.38629 1.38629 0.63919 0.75018 * 0.07447 2.63437 0.00000 * //