INFERNAL1/a [1.1.5 | Sep 2023] NAME n00280 ACC RF03531 DESC Clostridioides difficile sRNA included into helicase gene STATES 312 NODES 82 CLEN 101 W 118 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 20:10:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03531/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 24 EFFN 2.569336 CKSUM 3866701779 NULL 0.000 0.000 0.000 0.000 GA 65.20 TC 65.20 NC 64.90 EFP7GF -9.6167 0.71845 ECMLC 0.62493 -6.60516 2.73875 1600000 412258 0.002911 ECMGC 0.36667 -12.93978 -1.65739 1600000 25045 0.015971 ECMLI 0.52910 -4.69919 5.55270 1600000 272213 0.004408 ECMGI 0.39443 -7.90110 2.58129 1600000 24986 0.016009 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 118 138 -7.189 -7.396 -0.211 -3.019 IL 1 1 2 1 4 17 54 121 142 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 54 121 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 16 53 118 138 -8.039 -0.020 -6.693 0.680 -0.659 -0.263 -0.104 D 4 2 3 5 3 12 49 116 136 -7.224 -2.737 -0.246 IL 5 5 3 5 3 16 53 120 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 15 52 117 137 -8.039 -0.020 -6.693 0.740 -0.462 -0.587 -0.091 D 7 5 3 8 3 12 49 115 136 -7.224 -2.737 -0.246 IL 8 8 3 8 3 15 52 119 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 14 51 116 136 -8.424 -0.131 -3.578 -0.283 -0.674 -0.933 1.020 D 10 8 3 11 3 12 48 115 135 -6.344 -0.590 -1.629 IL 11 11 3 11 3 15 52 117 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 103 - A - - MR 12 11 3 14 3 16 52 115 135 -8.430 -0.018 -6.748 1.397 -1.480 -1.438 -0.646 D 13 11 3 14 3 10 46 113 133 -7.290 -1.833 -0.488 IR 14 14 3 14 3 14 51 116 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 102 - A - - MR 15 14 3 17 3 16 51 114 134 -8.461 -0.017 -6.778 1.764 -2.601 -2.210 -2.166 D 16 14 3 17 3 10 45 112 132 -7.138 -2.316 -0.336 IR 17 17 3 17 3 14 50 115 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 101 - A - - MR 18 17 3 20 5 15 50 113 133 -7.193 -0.036 -7.008 -7.220 -8.112 1.475 -1.822 -0.886 -1.335 D 19 17 3 20 5 9 45 111 132 -5.818 -0.913 -2.380 -4.875 -2.152 IR 20 20 3 20 5 13 49 113 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 100 g c - - MP 21 20 3 25 6 15 50 112 132 -9.171 -9.110 -0.108 -3.998 -8.166 -8.561 -1.890 -0.399 -2.069 1.318 -1.577 -2.872 1.500 -2.387 -2.130 1.610 -2.666 0.234 1.320 -2.182 -0.173 -0.921 ML 22 20 3 25 6 11 46 111 131 -6.481 -6.827 -1.025 -1.235 -6.676 -4.206 0.220 -0.656 0.381 -0.154 MR 23 20 3 25 6 11 46 110 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 7 42 108 128 -9.305 -8.003 -3.800 -4.482 -4.500 -0.262 IL 25 25 5 25 6 12 48 112 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 12 48 111 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 99 c g - - MP 27 26 6 31 6 14 48 110 130 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -0.170 -1.433 -1.782 1.260 -1.350 -2.625 1.604 -2.112 -1.845 1.180 -2.410 -0.375 1.450 -1.919 0.037 -0.508 ML 28 26 6 31 6 11 45 108 129 -7.107 -7.453 -2.167 -0.468 -7.303 -4.832 1.239 -1.156 -0.898 -0.611 MR 29 26 6 31 6 10 45 108 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 7 41 106 126 -9.305 -8.003 -3.800 -4.482 -2.274 -0.575 IL 31 31 5 31 6 12 46 110 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 12 47 109 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 98 g c - - MP 33 32 6 37 6 12 46 108 128 -9.103 -9.042 -0.036 -6.128 -8.099 -8.494 -1.368 -1.356 -1.970 1.371 -1.937 -2.784 1.524 -1.694 -2.029 1.589 -2.573 -0.139 1.395 -2.090 0.210 -1.187 ML 34 32 6 37 6 10 44 107 127 -7.107 -7.453 -0.577 -1.861 -7.303 -4.832 0.845 -0.754 -0.726 0.009 MR 35 32 6 37 6 10 44 106 127 -7.167 -5.896 -1.805 -5.874 -0.703 -4.088 0.726 -0.631 -0.343 -0.133 D 36 32 6 37 6 7 40 104 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 11 45 108 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 11 45 107 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 97 g c - - MP 39 38 6 43 4 11 44 106 126 -7.022 -8.268 -0.180 -3.230 -3.081 -2.404 -1.881 1.123 -3.214 -3.812 1.138 -3.421 -3.276 2.757 -3.701 -0.235 1.061 -3.104 -0.877 -2.111 ML 40 38 6 43 4 8 42 105 126 -2.762 -4.885 -1.646 -1.002 0.266 -0.615 0.298 -0.128 MR 41 38 6 43 4 9 43 105 125 -4.476 -12.902 -0.291 -2.859 0.136 0.142 -0.542 0.152 D 42 38 6 43 4 6 40 103 124 -12.737 -14.007 -2.036 -0.404 IL 43 43 5 43 4 9 43 105 126 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 10 44 106 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 96 - c - - MR 45 44 6 47 5 10 43 104 124 -7.176 -0.190 -4.091 -4.208 -8.095 -0.086 0.381 -0.609 0.138 D 46 44 6 47 5 6 40 103 123 -5.881 -0.836 -1.947 -4.938 -2.932 IR 47 47 3 47 5 9 43 104 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 95 c g - - MP 48 47 3 52 6 11 43 103 123 -9.103 -9.043 -0.038 -7.819 -6.058 -8.494 -1.213 -1.781 -1.787 1.433 -1.182 -2.635 1.582 -0.671 -1.849 1.046 -2.417 -0.408 1.477 -1.927 0.187 -0.745 ML 49 47 3 52 6 8 41 102 122 -6.969 -7.316 -0.919 -1.282 -7.165 -4.695 0.252 -0.323 -0.288 0.251 MR 50 47 3 52 6 7 39 101 122 -7.335 -6.064 -1.973 -6.043 -0.607 -4.256 0.467 -0.500 -0.495 0.265 D 51 47 3 52 6 4 36 99 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 8 41 103 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 8 41 102 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 94 u a - - MP 54 53 6 58 6 9 41 101 121 -9.137 -9.077 -0.046 -5.522 -8.133 -8.528 -1.197 -1.398 -1.321 1.264 -1.676 -1.865 1.448 -2.033 -1.410 1.181 -2.320 -0.369 1.574 -1.405 0.222 -0.547 ML 55 53 6 58 6 7 39 100 121 -6.487 -6.833 -1.018 -1.242 -6.683 -4.213 0.214 -0.662 0.391 -0.158 MR 56 53 6 58 6 6 38 100 120 -7.477 -6.206 -2.114 -6.184 -0.538 -4.397 -0.140 0.583 -0.849 0.055 D 57 53 6 58 6 4 36 98 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 7 40 101 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 7 40 100 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 93 g c - - MP 60 59 6 64 4 8 39 99 119 -7.009 -7.216 -0.148 -3.591 -2.435 -1.326 -2.560 1.762 -2.734 -3.314 0.971 -2.929 -2.654 2.296 -1.637 0.426 0.758 -2.625 -0.700 -1.692 ML 61 59 6 64 4 6 38 99 120 -3.992 -4.175 -0.418 -2.904 0.157 -0.718 0.490 -0.197 MR 62 59 6 64 4 4 36 98 119 -5.360 -4.389 -2.257 -0.477 0.056 -0.611 0.266 0.142 D 63 59 6 64 4 3 35 98 118 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 7 39 101 121 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 7 39 100 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - a - - - ML 66 65 6 68 3 7 38 97 117 -7.997 -0.020 -6.651 0.974 -0.772 -1.074 -0.037 D 67 65 6 68 3 3 35 95 116 -7.406 -1.481 -0.653 IL 68 68 3 68 3 6 38 99 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - a - - - ML 69 68 3 71 3 7 37 96 116 -8.076 -0.019 -6.730 0.378 -0.699 -0.243 0.310 D 70 68 3 71 3 3 34 95 115 -7.036 -0.688 -1.428 IL 71 71 3 71 3 5 37 98 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - a - - - ML 72 71 3 74 3 6 36 95 115 -8.189 -0.018 -6.843 0.454 -0.462 0.211 -0.421 D 73 71 3 74 3 2 32 93 114 -6.174 -1.687 -0.566 IL 74 74 3 74 3 5 36 97 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - A - - - ML 75 74 3 77 3 6 35 94 114 -8.189 -0.018 -6.843 1.045 -0.919 -0.968 -0.158 D 76 74 3 77 3 1 32 92 113 -6.174 -1.687 -0.566 IL 77 77 3 77 3 4 35 96 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - u - - - ML 78 77 3 80 3 5 34 93 113 -8.189 -0.018 -6.843 0.397 -0.576 -0.590 0.431 D 79 77 3 80 3 1 31 91 111 -6.174 -1.687 -0.566 IL 80 80 3 80 3 4 34 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 81 80 3 83 3 4 33 92 112 -8.189 -0.018 -6.843 -2.054 -3.341 1.811 -2.728 D 82 80 3 83 3 1 30 90 110 -6.174 -1.687 -0.566 IL 83 83 3 83 3 4 33 94 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - - - ML 84 83 3 86 3 3 32 91 111 -8.189 -0.018 -6.843 1.801 -2.828 -2.415 -2.417 D 85 83 3 86 3 1 30 89 109 -6.174 -1.687 -0.566 IL 86 86 3 86 3 3 32 93 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - a - - - ML 87 86 3 89 3 2 31 90 110 -8.189 -0.018 -6.843 0.461 -0.720 -0.401 0.332 D 88 86 3 89 3 0 29 88 108 -6.174 -1.687 -0.566 IL 89 89 3 89 3 2 31 91 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - g - - - ML 90 89 3 92 2 1 30 89 109 -8.623 -0.004 -0.176 -1.290 0.909 -0.273 D 91 89 3 92 2 0 29 88 108 -8.445 -0.004 IL 92 92 3 92 2 1 30 90 110 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 24 ] - - - - - - B 93 92 3 94 201 0 29 88 108 [ BEGL 25 ] - - - - - - S 94 93 1 95 4 0 1 50 69 -0.067 -6.960 -5.075 -7.008 [ MATP 26 ] 20 54 a u - - MP 95 94 1 99 6 2 4 50 69 -9.185 -9.124 -0.020 -7.900 -8.180 -8.575 -0.544 -1.417 -1.778 1.655 -1.342 -2.624 1.455 -1.294 -1.843 1.041 -2.411 -0.413 1.461 -1.916 0.014 -1.034 ML 96 94 1 99 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 1 99 6 1 1 48 68 -7.211 -5.940 -1.848 -5.918 -0.677 -4.131 0.200 -0.675 0.416 -0.167 D 98 94 1 99 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 53 a u - - MP 101 100 6 105 6 2 4 48 67 -9.185 -9.124 -0.020 -7.900 -8.180 -8.575 -2.081 -2.005 -2.259 1.705 -2.253 -3.100 1.252 -1.389 -2.297 1.352 -2.837 0.301 1.045 -2.400 -0.351 0.841 ML 102 100 6 105 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 46 66 -7.211 -5.940 -1.848 -5.918 -0.677 -4.131 0.078 -0.384 -0.515 0.564 D 104 100 6 105 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 52 c g - - MP 107 106 6 111 6 2 3 46 65 -9.185 -9.124 -0.020 -7.900 -8.180 -8.575 -2.000 -2.145 0.036 0.903 -2.009 -2.990 2.211 -2.422 -2.226 0.920 -0.237 -0.668 1.228 -2.314 -0.114 -1.373 ML 108 106 6 111 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 45 64 -7.211 -5.940 -1.248 -5.918 -1.052 -4.131 0.200 -0.675 0.416 -0.167 D 110 106 6 111 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 51 A U - - MP 113 112 6 117 4 2 2 44 63 -7.189 -7.396 -0.045 -5.810 -4.071 -3.242 -4.019 3.500 -4.443 -5.390 -0.258 -4.118 -4.063 0.636 -4.608 -0.791 -0.604 -4.573 -2.154 -1.565 ML 114 112 6 117 4 1 1 44 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 117 117 5 117 4 1 1 46 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - a - - - ML 119 118 6 121 3 1 1 41 61 -8.189 -0.018 -6.843 0.564 -0.762 -0.450 0.263 D 120 118 6 121 3 0 0 40 60 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - a - - - ML 122 121 3 124 3 1 1 40 60 -8.189 -0.018 -6.843 0.982 -0.722 -1.163 -0.040 D 123 121 3 124 3 0 0 39 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - U - - - ML 125 124 3 127 3 1 1 39 58 -8.189 -0.018 -6.843 -1.911 -1.835 -2.663 1.721 D 126 124 3 127 3 0 0 38 57 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - a - - - ML 128 127 3 130 3 1 1 38 57 -8.189 -0.018 -6.843 0.862 -1.057 -0.388 -0.093 D 129 127 3 130 3 0 0 37 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - G - - - ML 131 130 3 133 3 1 1 37 56 -8.566 -0.016 -6.884 -2.054 -3.341 1.811 -2.728 D 132 130 3 133 3 0 0 36 55 -5.620 -0.734 -1.403 IL 133 133 3 133 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 50 - A - - MR 134 133 3 136 3 1 1 36 55 -8.566 -0.016 -6.884 1.801 -2.828 -2.415 -2.417 D 135 133 3 136 3 0 0 35 54 -6.390 -1.568 -0.620 IR 136 136 3 136 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 49 - U - - MR 137 136 3 139 3 1 1 35 54 -8.566 -0.016 -6.884 -1.911 -1.835 -2.663 1.721 D 138 136 3 139 3 0 0 34 53 -6.390 -1.568 -0.620 IR 139 139 3 139 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 48 - u - - MR 140 139 3 142 3 1 1 34 53 -8.566 -0.016 -6.884 -0.372 -0.110 -0.253 0.548 D 141 139 3 142 3 0 0 33 52 -6.390 -1.568 -0.620 IR 142 142 3 142 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 47 - u - - MR 143 142 3 145 3 1 1 33 52 -8.566 -0.016 -6.884 -0.562 -1.016 -0.162 0.952 D 144 142 3 145 3 0 0 32 51 -6.390 -1.568 -0.620 IR 145 145 3 145 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 46 - U - - MR 146 145 3 148 5 1 1 32 51 -7.292 -0.034 -7.107 -7.319 -8.211 0.062 -0.992 -1.344 1.042 D 147 145 3 148 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 148 148 3 148 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 29 45 A U - - MP 149 148 3 153 6 2 2 31 50 -9.204 -9.143 -0.020 -7.920 -8.200 -8.595 -1.832 -3.117 -3.766 3.445 -4.128 -4.996 -0.134 -3.933 -3.837 0.742 -4.383 -0.781 -0.422 -4.201 -1.950 -2.783 ML 150 148 3 153 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 3 153 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 3 153 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 30 44 a u - - MP 155 154 6 159 6 2 2 29 48 -9.204 -9.143 -0.020 -7.920 -8.200 -8.595 -3.605 -2.563 -3.724 2.813 -4.479 -5.181 -0.217 -3.895 -3.551 1.326 -4.115 1.926 -0.444 -4.236 -2.100 -2.527 ML 156 154 6 159 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 31 43 G C - - MP 161 160 6 165 4 2 2 27 46 -7.189 -7.396 -0.045 -5.810 -5.184 -3.308 -5.338 -0.103 -5.852 -4.861 -1.106 -5.602 -4.604 3.728 -4.912 -1.027 -1.481 -4.754 -3.169 -4.208 ML 162 160 6 165 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - A - - - ML 167 166 6 169 3 1 1 24 43 -8.189 -0.018 -6.843 1.801 -2.828 -2.415 -2.417 D 168 166 6 169 3 0 0 23 42 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - A - - - ML 170 169 3 172 3 1 1 23 42 -8.189 -0.018 -6.843 1.234 -1.672 -0.184 -1.139 D 171 169 3 172 3 0 0 22 41 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - G - - - ML 173 172 3 175 3 1 1 22 41 -8.189 -0.018 -6.843 -2.054 -3.341 1.811 -2.728 D 174 172 3 175 3 0 0 21 40 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - A - - - ML 176 175 3 178 3 1 1 21 40 -8.189 -0.018 -6.843 1.493 -1.226 -1.609 -1.220 D 177 175 3 178 3 0 0 20 39 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - a - - - ML 179 178 3 181 3 1 1 20 38 -8.189 -0.018 -6.843 0.818 -1.301 0.214 -0.574 D 180 178 3 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 37 - A - - - ML 182 181 3 184 3 1 1 19 37 -8.189 -0.018 -6.843 1.612 -1.675 -1.806 -1.536 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 38 - G - - - ML 185 184 3 187 3 1 1 17 36 -8.189 -0.018 -6.843 -2.054 -3.341 1.811 -2.728 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 39 - A - - - ML 188 187 3 190 3 1 1 16 35 -8.189 -0.018 -6.843 1.801 -2.828 -2.415 -2.417 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 40 - A - - - ML 191 190 3 193 3 1 1 15 33 -8.189 -0.018 -6.843 1.801 -2.828 -2.415 -2.417 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 41 - G - - - ML 194 193 3 196 3 1 1 13 31 -8.189 -0.018 -6.843 -2.054 -3.341 1.811 -2.728 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 42 - A - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 1.463 -1.878 -0.759 -1.394 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 [ BEGR 55 ] - - - - - - S 201 93 1 202 5 0 2 51 71 -7.292 -0.069 -5.023 -7.319 -8.211 IL 202 202 2 202 5 1 1 53 72 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 55 92 g c - - MP 203 202 2 207 6 2 4 51 71 -9.187 -9.126 -0.020 -7.903 -8.183 -8.578 -2.928 -2.097 -3.118 1.049 -3.399 -3.771 0.562 -3.369 -0.073 2.419 -3.413 1.732 0.294 -3.193 -1.223 -2.101 ML 204 202 2 207 6 1 1 50 69 -6.475 -6.821 -1.536 -0.809 -6.671 -4.201 0.224 -0.652 0.373 -0.152 MR 205 202 2 207 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 206 202 2 207 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 207 207 5 207 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 208 208 6 208 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 56 91 c g - - MP 209 208 6 213 6 2 3 49 69 -9.187 -9.126 -0.037 -5.970 -8.183 -8.578 -1.575 -1.462 -1.830 1.122 -1.817 -1.895 1.650 -1.084 -1.399 1.374 -1.339 0.283 1.247 -1.916 -0.039 -1.045 ML 210 208 6 213 6 1 1 48 68 -6.475 -6.821 -1.031 -1.230 -6.671 -4.201 0.224 -0.652 0.373 -0.152 MR 211 208 6 213 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 212 208 6 213 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 213 213 5 213 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 214 214 6 214 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 57 90 u a - - MP 215 214 6 219 4 2 2 47 67 -7.148 -4.101 -0.126 -5.770 -0.706 -1.352 -1.780 1.301 -1.759 -2.616 1.487 -2.117 -1.408 1.054 -2.402 -0.239 1.701 -1.915 0.006 -0.440 ML 216 214 6 219 4 1 1 47 66 -3.926 -4.108 -0.442 -2.838 0.109 -0.376 -0.481 0.521 MR 217 214 6 219 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 218 214 6 219 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 219 219 5 219 4 1 1 48 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 220 220 6 220 3 1 1 47 66 -1.617 -0.681 -4.317 0.000 0.000 0.000 0.000 [ MATL 59 ] 58 - A - - - ML 221 220 6 223 3 1 1 45 64 -8.189 -0.018 -6.843 1.658 -2.258 -1.498 -1.826 D 222 220 6 223 3 0 0 44 63 -6.174 -1.687 -0.566 IL 223 223 3 223 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 59 - U - - - ML 224 223 3 226 3 1 1 44 63 -8.566 -0.016 -6.884 -1.911 -1.835 -2.663 1.721 D 225 223 3 226 3 0 0 42 62 -5.620 -0.734 -1.403 IL 226 226 3 226 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 61 ] - 88 - a - - MR 227 226 3 229 3 1 1 43 62 -8.566 -0.016 -6.884 0.742 -1.007 -0.279 0.008 D 228 226 3 229 3 0 0 41 60 -6.390 -1.568 -0.620 IR 229 229 3 229 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 62 ] - 87 - U - - MR 230 229 3 232 5 1 1 42 61 -7.292 -0.073 -4.907 -7.319 -8.211 -1.911 -1.835 -2.663 1.721 D 231 229 3 232 5 0 0 40 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 232 232 3 232 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 60 86 u a - - MP 233 232 3 237 6 2 2 41 60 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -0.940 -1.700 -1.706 1.412 -1.337 -2.549 1.433 -1.443 -0.842 1.144 -2.337 -0.222 1.443 -1.449 0.040 -0.661 ML 234 232 3 237 6 1 1 39 58 -6.498 -6.844 -1.558 -0.792 -6.694 -4.223 0.772 -0.666 -0.383 -0.159 MR 235 232 3 237 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 236 232 3 237 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 237 237 5 237 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 238 238 6 238 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 61 85 A U - - MP 239 238 6 243 6 2 2 39 58 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -3.755 -1.329 -3.789 3.369 -4.375 -5.145 -0.237 -3.961 -3.757 1.074 -4.312 -0.412 -0.492 -4.273 -2.091 -2.702 ML 240 238 6 243 6 1 1 38 57 -6.498 -6.844 -1.008 -1.253 -6.694 -4.223 0.772 -0.666 -0.383 -0.159 MR 241 238 6 243 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 242 238 6 243 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 243 243 5 243 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 244 244 6 244 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 62 84 c a - - MP 245 244 6 249 6 2 2 37 56 -9.204 -9.143 -0.020 -7.920 -8.200 -8.595 -3.224 -3.354 -3.205 -0.051 2.481 -1.356 2.046 -3.095 -3.265 0.031 -3.695 -1.749 0.918 -3.438 -0.294 -2.286 ML 246 244 6 249 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 247 244 6 249 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 248 244 6 249 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 249 249 5 249 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 250 250 6 250 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 63 83 a u - - MP 251 250 6 255 4 2 2 35 54 -7.189 -7.396 -0.045 -5.810 -2.857 -2.500 -2.963 2.582 -2.946 -3.879 0.971 -3.173 -2.999 1.360 -3.526 -0.414 0.839 -3.161 -0.833 0.390 ML 252 250 6 255 4 1 1 35 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 253 250 6 255 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 254 250 6 255 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 255 255 5 255 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 256 256 6 256 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 64 - A - - - ML 257 256 6 259 3 1 1 32 51 -8.189 -0.018 -6.843 1.512 -1.291 -1.636 -1.264 D 258 256 6 259 3 0 0 31 50 -6.174 -1.687 -0.566 IL 259 259 3 259 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 65 - G - - - ML 260 259 3 262 3 1 1 31 50 -8.566 -0.055 -4.835 -2.054 -3.341 1.811 -2.728 D 261 259 3 262 3 0 0 30 49 -5.620 -0.734 -1.403 IL 262 262 3 262 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 69 ] - 82 - a - - MR 263 262 3 265 5 1 1 30 49 -7.255 -0.035 -7.070 -7.283 -8.174 0.556 -0.639 -0.122 -0.046 D 264 262 3 265 5 0 0 29 48 -5.546 -0.597 -3.172 -4.603 -2.597 IR 265 265 3 265 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 70 ] 66 81 a u - - MP 266 265 3 270 6 2 2 29 48 -9.204 -9.143 -0.020 -7.920 -8.200 -8.595 -3.050 -2.349 -3.178 2.375 -3.496 -4.163 0.477 -3.433 -3.144 1.582 -3.652 1.660 0.231 -3.407 -1.318 -0.431 ML 267 265 3 270 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 268 265 3 270 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 269 265 3 270 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 270 270 5 270 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 271 271 6 271 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 71 ] 67 80 g c - - MP 272 271 6 276 6 2 2 27 46 -9.204 -9.143 -0.020 -7.920 -8.200 -8.595 -3.880 -2.632 -3.949 0.898 -4.763 -4.851 -0.240 -4.216 -3.808 2.822 -4.265 2.186 -0.505 -4.149 -2.199 -2.775 ML 273 271 6 276 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 274 271 6 276 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 275 271 6 276 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 276 276 5 276 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 277 277 6 277 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 72 ] 68 79 c g - - MP 278 277 6 282 6 2 2 25 44 -9.204 -9.143 -0.020 -7.920 -8.200 -8.595 -1.919 -2.089 -2.093 0.929 -0.914 -1.494 2.171 0.172 -2.147 0.847 -2.703 -0.657 1.294 -2.241 -0.051 -1.305 ML 279 277 6 282 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 280 277 6 282 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 281 277 6 282 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 282 282 5 282 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 283 283 6 283 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 73 ] 69 78 u a - - MP 284 283 6 288 4 2 2 23 42 -7.189 -7.396 -0.045 -5.810 0.018 -1.365 -0.786 1.200 -1.394 -2.599 1.434 -2.094 -1.816 1.013 -2.388 -0.115 1.606 -1.889 0.018 -1.012 ML 285 283 6 288 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 286 283 6 288 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 287 283 6 288 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 288 288 5 288 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 289 289 6 289 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 70 - A - - - ML 290 289 6 292 3 1 1 20 39 -8.189 -0.018 -6.843 1.398 -1.801 -0.572 -1.301 D 291 289 6 292 3 0 0 19 38 -6.174 -1.687 -0.566 IL 292 292 3 292 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 71 - A - - - ML 293 292 3 295 3 1 1 19 38 -4.985 -0.059 -6.843 1.328 -1.414 -1.437 -0.423 D 294 292 3 295 3 0 0 18 36 -6.174 -1.687 -0.566 IL 295 295 3 295 3 1 1 21 39 -1.548 -0.724 -4.248 0.000 0.000 0.000 0.000 [ MATL 76 ] 73 - A - - - ML 296 295 3 298 3 1 1 17 36 -8.189 -0.018 -6.843 1.165 -1.639 -0.047 -1.095 D 297 295 3 298 3 0 0 17 36 -6.174 -1.687 -0.566 IL 298 298 3 298 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 74 - G - - - ML 299 298 3 301 3 1 1 16 35 -8.189 -0.018 -6.843 -0.793 -1.796 1.471 -1.462 D 300 298 3 301 3 0 0 16 34 -6.174 -1.687 -0.566 IL 301 301 3 301 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 75 - A - - - ML 302 301 3 304 3 1 1 15 33 -8.189 -0.018 -6.843 1.649 -2.102 -1.931 -1.438 D 303 301 3 304 3 0 0 15 33 -6.174 -1.687 -0.566 IL 304 304 3 304 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 76 - A - - - ML 305 304 3 307 3 1 1 13 31 -8.189 -0.018 -6.843 1.131 -0.895 -0.780 -0.537 D 306 304 3 307 3 0 0 13 32 -6.174 -1.687 -0.566 IL 307 307 3 307 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 80 ] 77 - A - - - ML 308 307 3 310 2 1 1 1 1 * 0.000 1.368 -1.331 -0.897 -1.048 D 309 307 3 310 2 0 0 0 0 * 0.000 IL 310 310 3 310 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 81 ] - - - - - - E 311 310 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME n00280 ACC RF03531 DESC Clostridioides difficile sRNA included into helicase gene LENG 101 MAXL 189 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 20:10:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03531/CM NSEQ 24 EFFN 3.811523 CKSUM 3866701779 STATS LOCAL MSV -9.3802 0.71845 STATS LOCAL VITERBI -10.3137 0.71845 STATS LOCAL FORWARD -3.7380 0.71845 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.06092 1.87633 1.40098 1.36902 1.38629 1.38629 1.38629 1.38629 0.15441 4.14848 2.06126 1.46634 0.26236 0.00000 * 1 0.87886 1.87943 1.56592 1.49982 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03619 4.03026 4.03026 1.46634 0.26236 2.30881 0.10467 2 0.82844 1.71713 1.83167 1.49816 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.03619 4.03026 4.03026 1.46634 0.26236 2.30881 0.10467 3 1.65869 1.94404 2.10465 0.60770 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.06804 4.03026 3.03643 1.46634 0.26236 0.22159 1.61567 4 1.40294 1.54441 1.25633 1.36261 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03299 4.12125 4.12125 1.46634 0.26236 1.54790 0.23914 5 1.22050 1.49810 1.60730 1.26963 5 a - - ( 1.38629 1.38629 1.38629 1.38629 0.03299 4.12125 4.12125 1.46634 0.26236 1.54790 0.23914 6 1.37753 1.53596 1.37880 1.27057 6 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03299 4.12125 4.12125 1.46634 0.26236 1.54790 0.23914 7 1.77948 2.00131 0.64851 1.75279 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.09353 4.12125 2.61636 1.46634 0.26236 0.55406 0.85475 8 1.40402 1.34797 1.62523 1.21147 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.06352 4.09158 3.10482 1.46634 0.26236 1.87237 0.16695 9 1.47512 1.54862 1.47388 1.10966 9 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03500 4.06305 4.06305 1.46634 0.26236 2.10245 0.13029 10 1.28972 2.05370 0.81815 1.86340 10 g - - ( 1.38629 1.38629 1.38629 1.38629 0.10337 4.06305 2.51319 1.46634 0.26236 2.10245 0.13029 11 0.64030 1.99317 2.26825 1.45625 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.03743 3.99711 3.99711 1.46634 0.26236 0.97139 0.47571 12 1.11074 1.93052 1.54310 1.16509 12 a - - , 1.38629 1.38629 1.38629 1.38629 0.03513 4.05949 4.05949 1.46634 0.26236 0.27218 1.43429 13 1.06082 1.70446 1.17996 1.80383 13 a - - , 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 14 0.59212 2.11790 2.17077 1.54894 14 A - - , 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 15 1.09067 1.83159 1.81698 1.07489 15 u - - , 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 16 3.28537 4.23067 0.07743 3.79265 16 G - - , 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 17 0.08228 3.83467 3.50549 3.59924 17 A - - , 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 18 1.04457 1.95044 1.66987 1.14673 18 a - - , 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 19 1.59468 2.45601 0.65603 1.64847 19 G - - , 1.38629 1.38629 1.38629 1.38629 0.06774 4.14848 3.00149 1.46634 0.26236 1.09861 0.40547 20 1.18740 1.48497 1.64897 1.28653 20 a - - < 1.38629 1.38629 1.38629 1.38629 0.03323 4.11397 4.11397 1.46634 0.26236 1.63874 0.21595 21 1.31867 1.77490 1.40810 1.14444 21 u - - < 1.38629 1.38629 1.38629 1.38629 0.03323 4.11397 4.11397 1.46634 0.26236 1.63874 0.21595 22 1.53041 1.03847 1.51692 1.55983 22 c - - < 1.38629 1.38629 1.38629 1.38629 0.03323 4.11397 4.11397 1.46634 0.26236 0.49175 0.94560 23 0.16351 3.56716 2.55863 3.09677 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 24 0.96494 1.98562 1.71178 1.20013 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 25 0.63517 1.95021 2.34566 1.46046 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 26 3.18165 3.05253 3.71634 0.12000 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 27 0.73707 2.24180 1.66982 1.48308 27 a - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 28 3.28537 4.23067 0.07743 3.79265 28 G - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 29 0.17411 3.41663 2.42279 3.26236 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 30 0.64820 3.32482 0.92866 3.08022 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 31 2.97984 3.82483 0.10066 3.76629 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 32 0.08228 3.83467 3.50549 3.59924 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 33 0.45676 2.82895 1.49434 2.48653 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 34 3.28537 4.23067 0.07743 3.79265 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 35 0.27093 2.34146 2.78303 2.53457 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 36 0.77134 2.46037 1.18771 1.91537 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 37 0.19702 2.72668 2.94979 2.79620 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 38 3.28537 4.23067 0.07743 3.79265 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 39 0.08228 3.83467 3.50549 3.59924 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 40 0.08228 3.83467 3.50549 3.59924 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 41 3.28537 4.23067 0.07743 3.79265 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 42 0.29943 2.98829 1.96116 2.69281 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 43 3.94185 0.12101 3.67886 2.66912 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 44 3.28903 2.13962 3.11283 0.22247 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 45 3.09460 2.71747 3.23182 0.16348 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 46 1.36465 2.25205 2.50357 0.58420 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 47 1.95329 2.26503 1.47666 0.64252 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 48 1.74947 1.43526 1.53342 0.98810 48 u - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 49 3.18165 3.05253 3.71634 0.12000 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 50 0.08228 3.83467 3.50549 3.59924 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 51 3.61162 2.85837 3.35694 0.12694 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 52 1.78853 2.09967 0.59151 1.85274 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 53 1.93481 1.78103 1.70823 0.68142 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 54 1.33037 1.77757 1.36724 1.16551 54 u - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 55 1.97474 2.57494 0.36259 2.41716 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 56 1.65626 1.32787 1.19351 1.42316 56 g - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 57 1.42013 1.56619 1.57636 1.07075 57 u - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 58 0.17140 3.30186 2.60906 3.05552 58 A - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 59 3.18165 3.05253 3.71634 0.12000 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 60 1.38323 1.52011 1.42955 1.23399 60 u - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 61 0.22717 3.34274 2.08749 3.12635 61 A - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 62 3.07469 0.26556 2.96163 2.00040 62 C - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 63 0.75189 2.21525 1.72114 1.42488 63 a - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 64 0.25875 2.39621 2.80601 2.57080 64 A - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 65 3.28537 4.23067 0.07743 3.79265 65 G - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 66 0.89531 2.73269 0.91417 2.07446 66 a - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 67 2.18680 3.18014 0.22809 2.99385 67 G - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 68 1.96822 0.71102 1.91230 1.50773 68 c - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 69 1.25414 1.57043 1.58341 1.19915 69 u - - < 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 70 0.34364 2.92773 1.80617 2.61713 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 71 0.38641 2.57574 2.61242 1.76576 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06538 3.04711 4.14848 0.56916 0.83471 1.09861 0.40547 72 0.50537 2.80362 1.38673 2.45070 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 73 2.13032 2.80173 0.28387 2.69364 74 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 74 0.17458 3.15870 3.05954 2.64785 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 75 0.52918 2.07588 2.01085 1.88656 76 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 76 0.36185 2.44448 2.10041 2.35984 77 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 77 1.15082 1.77682 1.29915 1.42011 78 a - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 78 1.59717 1.91841 0.93212 1.35879 79 g - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 79 3.22220 0.79265 2.98760 0.78290 80 u - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 80 2.77404 1.86886 2.53707 0.35070 81 U - - > 1.38629 1.38629 1.38629 1.38629 0.06538 4.14848 3.04711 1.46634 0.26236 1.09861 0.40547 81 0.97739 1.86300 1.45163 1.45110 82 a - - - 1.38629 1.38629 1.38629 1.38629 0.03315 4.11626 4.11626 1.46634 0.26236 0.50972 0.91795 82 2.15814 1.93556 2.03029 0.49623 83 U - - > 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 83 0.54654 2.63303 1.22392 2.89833 84 A - - > 1.38629 1.38629 1.38629 1.38629 0.06679 4.14848 3.01970 1.46634 0.26236 1.09861 0.40547 84 3.41266 2.19697 3.19813 0.20448 85 U - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11490 4.11490 1.46634 0.26236 1.62765 0.21864 85 1.30753 1.66551 1.38277 1.23948 86 u - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11490 4.11490 1.46634 0.26236 0.49887 0.93450 86 3.18165 3.05254 3.71634 0.12000 87 U - - - 1.38629 1.38629 1.38629 1.38629 0.03209 4.14848 4.14848 1.46634 0.26236 1.09861 0.40547 87 0.82944 2.19764 1.57989 1.39980 88 a - - - 1.38629 1.38629 1.38629 1.38629 0.12143 2.66784 3.10236 0.40582 1.09791 1.09861 0.40547 88 1.19842 1.76476 1.35932 1.30834 90 a - - > 1.38629 1.38629 1.38629 1.38629 0.06527 4.11890 3.05934 1.46634 0.26236 0.53215 0.88513 89 1.59785 1.50852 1.20241 1.28749 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.03309 4.11827 4.11827 1.46634 0.26236 1.58619 0.22904 90 1.93006 1.00662 2.40710 0.91796 92 u - - > 1.38629 1.38629 1.38629 1.38629 0.07859 4.11827 2.82507 1.46634 0.26236 0.52663 0.89304 91 2.07145 1.04450 1.70912 1.07557 93 c - - ) 1.38629 1.38629 1.38629 1.38629 0.06811 4.10584 3.00856 1.46634 0.26236 0.43747 1.03752 92 1.34970 1.50274 1.32600 1.37585 94 g - - ) 1.38629 1.38629 1.38629 1.38629 0.12529 4.11646 2.28813 1.46634 0.26236 1.60864 0.22334 93 1.37077 1.79418 1.30280 1.17748 95 u - - ) 1.38629 1.38629 1.38629 1.38629 0.08805 4.02746 2.71102 1.46634 0.26236 0.76351 0.62741 94 1.49664 1.04825 1.83022 1.32732 96 c - - - 1.38629 1.38629 1.38629 1.38629 0.03562 4.04569 4.04569 1.46634 0.26236 0.47276 0.97626 95 1.94498 0.71810 1.76120 1.62206 97 c - - ) 1.38629 1.38629 1.38629 1.38629 0.19678 4.12515 1.81728 1.46634 0.26236 0.59482 0.80221 96 1.48258 1.47891 1.28863 1.31150 98 g - - ) 1.38629 1.38629 1.38629 1.38629 0.07062 3.99425 3.00041 1.46634 0.26236 2.48931 0.08661 97 1.26893 1.68627 1.28374 1.36002 99 a - - ) 1.38629 1.38629 1.38629 1.38629 0.07778 3.96240 2.88575 1.46634 0.26236 0.31350 1.31261 98 1.56449 1.35068 1.38565 1.26733 100 u - - ) 1.38629 1.38629 1.38629 1.38629 0.06376 4.08936 3.10059 1.46634 0.26236 1.89257 0.16332 99 0.28742 2.93469 2.07998 2.63491 101 A - - : 1.38629 1.38629 1.38629 1.38629 0.03508 4.06068 4.06068 1.46634 0.26236 2.11918 0.12798 100 0.09888 3.65959 3.34471 3.40709 102 A - - : 1.38629 1.38629 1.38629 1.38629 0.06151 4.06068 3.16013 1.46634 0.26236 2.11918 0.12798 101 0.33566 2.62645 2.61887 1.96675 103 A - - : 1.38629 1.38629 1.38629 1.38629 0.01816 4.01733 * 1.46634 0.26236 0.00000 * //