INFERNAL1/a [1.1.5 | Sep 2023] NAME c-di-GMP-II-GCG ACC RF03170 DESC c-di-GMP-II-GCG riboswitch aptamer STATES 259 NODES 65 CLEN 85 W 176 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 10:11:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03170/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 33 EFFN 2.848022 CKSUM 2725441014 NULL 0.000 0.000 0.000 0.000 GA 47.90 TC 47.90 NC 47.80 EFP7GF -11.8958 0.71872 ECMLC 0.56832 -6.01862 3.08419 1600000 211791 0.005666 ECMGC 0.35002 -17.60660 -2.73597 1600000 72869 0.005489 ECMLI 0.55397 -4.29929 4.59985 1600000 166031 0.007228 ECMGI 0.37507 -12.12827 0.70946 1600000 49343 0.008107 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 176 289 -9.244 -9.184 -0.120 -5.769 -8.240 -4.184 IL 1 1 2 1 6 1 30 177 290 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 31 177 290 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 117 c g - - MP 3 2 3 7 6 2 34 176 289 -9.145 -9.084 -0.021 -7.860 -8.140 -8.535 -0.929 -1.682 -1.255 1.181 -1.393 -1.045 1.525 -2.023 -1.305 0.995 -2.310 -0.166 1.452 -0.998 0.240 -0.787 ML 4 2 3 7 6 1 27 174 287 -6.524 -6.870 -1.247 -1.008 -6.720 -4.250 0.194 -0.482 0.009 0.181 MR 5 2 3 7 6 1 26 173 287 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 22 172 285 -10.032 -8.731 -0.895 -5.210 -5.227 -1.303 IL 7 7 5 7 6 1 28 175 288 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 29 175 288 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 116 c g - - MP 9 8 6 13 6 2 34 174 287 -9.234 -9.173 -0.019 -7.950 -8.230 -8.625 -1.098 -1.107 -1.297 1.186 -1.473 -1.781 1.670 -2.064 -1.779 1.026 -1.270 -0.093 1.437 -1.309 0.023 -0.984 ML 10 8 6 13 6 1 26 172 285 -6.391 -6.738 -1.452 -0.875 -6.587 -4.117 0.298 -0.587 0.237 -0.110 MR 11 8 6 13 6 1 25 171 285 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 20 166 280 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 28 173 286 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 28 173 286 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 115 c g - - MP 15 14 6 19 6 2 33 172 285 -9.234 -9.173 -0.019 -7.950 -8.230 -8.625 -1.198 -1.848 -1.291 1.400 -1.093 -2.699 1.694 -2.172 -1.911 1.033 -2.482 -0.200 1.416 -1.989 0.494 -1.096 ML 16 14 6 19 6 1 25 170 283 -6.391 -6.738 -1.452 -0.875 -6.587 -4.117 0.651 -0.579 -0.282 -0.093 MR 17 14 6 19 6 1 25 169 283 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 19 164 278 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 27 171 284 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 28 171 284 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 114 c g - - MP 21 20 6 25 6 2 32 170 283 -9.234 -9.173 -0.019 -7.950 -8.230 -8.625 -1.511 -1.452 -1.084 1.141 -0.987 -1.350 1.654 -1.614 -1.493 1.078 -1.525 -0.422 1.398 -1.121 0.101 -0.981 ML 22 20 6 25 6 1 25 168 281 -6.391 -6.738 -1.124 -1.146 -6.587 -4.117 0.197 0.028 -0.469 0.153 MR 23 20 6 25 6 1 24 167 281 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 19 163 276 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 27 169 282 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 27 169 282 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 113 c g - - MP 27 26 6 31 6 2 31 168 281 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -1.271 -1.509 -1.332 1.243 -0.958 -2.580 1.569 -0.698 -1.796 1.152 -2.369 -0.225 1.296 -1.522 0.361 -0.844 ML 28 26 6 31 6 1 24 166 279 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 24 165 279 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 18 161 274 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 26 167 280 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 26 167 280 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 112 c g - - MP 33 32 6 37 6 2 29 166 279 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -0.977 -1.283 -1.443 1.270 -0.780 -2.566 1.442 -1.204 -1.783 1.102 -0.738 -0.322 1.345 -1.607 0.180 -0.835 ML 34 32 6 37 6 1 24 164 277 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 23 164 277 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 18 159 272 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 25 165 278 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 26 165 278 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 111 c g - - MP 39 38 6 43 6 2 28 164 277 -9.244 -9.184 -0.033 -7.960 -6.279 -8.635 -1.527 -1.707 -2.111 1.370 -1.169 -2.952 1.870 -2.397 -2.173 1.510 -2.732 -0.381 1.329 -2.244 -0.005 -1.313 ML 40 38 6 43 6 1 23 162 275 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 22 162 275 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 17 157 271 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 25 163 277 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 25 163 276 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 110 c g - - MP 45 44 6 49 6 2 26 162 275 -9.231 -9.170 -0.019 -7.946 -8.226 -8.621 -1.713 -1.583 -1.905 1.197 -1.568 -1.823 2.039 -2.217 -1.963 1.132 -2.527 -0.469 1.369 -1.391 0.129 -1.141 ML 46 44 6 49 6 1 22 160 273 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 22 160 273 -7.153 -5.882 -1.331 -5.860 -0.994 -4.074 0.255 -0.624 0.317 -0.133 D 48 44 6 49 6 0 17 156 269 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 24 161 275 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 24 161 274 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 109 g c - - MP 51 50 6 55 6 2 24 160 273 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -2.353 -2.240 -2.485 1.131 -1.151 -3.295 1.512 -2.763 -2.574 2.309 -2.019 -0.449 1.153 -2.588 -0.225 -1.627 ML 52 50 6 55 6 1 21 158 271 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 20 158 271 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 17 155 268 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 22 159 273 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 22 159 272 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 108 G C - - MP 57 56 6 61 6 2 22 158 271 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -4.334 -2.939 -4.350 0.661 -4.967 -4.587 -0.372 -4.767 -2.222 3.514 -4.553 -0.637 -0.669 -4.127 -2.361 -3.289 ML 58 56 6 61 6 1 20 157 270 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 19 156 269 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 16 154 267 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 21 158 271 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 21 157 271 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 107 G C - - MP 63 62 6 67 4 2 20 156 270 -7.282 -3.286 -0.194 -5.904 -4.956 -3.200 -5.059 0.092 -5.870 -4.853 -1.067 -5.436 -4.536 3.667 -4.858 -0.291 -1.358 -4.613 -3.116 -3.940 ML 64 62 6 67 4 1 19 155 268 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 17 154 268 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 16 153 267 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 20 156 269 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 19 156 269 -1.779 -0.591 -4.479 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 69 68 6 71 3 1 18 154 267 -8.649 -0.090 -4.105 1.086 -0.597 -0.980 -0.495 D 70 68 6 71 3 0 15 153 266 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 19 155 268 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 105 - a - - MR 72 71 3 74 3 1 18 153 266 -8.575 -0.016 -6.893 0.866 -0.892 -0.143 -0.448 D 73 71 3 74 3 0 13 151 265 -6.987 -0.832 -1.217 IR 74 74 3 74 3 1 17 153 267 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 104 - G - - MR 75 74 3 77 3 1 17 152 265 -8.649 -0.015 -6.967 -2.232 -3.541 1.836 -2.926 D 76 74 3 77 3 0 12 150 263 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 16 153 266 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 103 - C - - MR 78 77 3 80 3 1 17 151 264 -8.649 -0.015 -6.967 -2.508 1.779 -3.337 -1.772 D 79 77 3 80 3 0 11 149 262 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 16 152 265 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 102 - C - - MR 81 80 3 83 3 1 16 150 263 -8.649 -0.015 -6.967 -2.508 1.779 -3.337 -1.772 D 82 80 3 83 3 0 10 148 261 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 15 151 264 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 101 - C - - MR 84 83 3 86 3 1 15 149 262 -8.649 -0.015 -6.967 -2.508 1.779 -3.337 -1.772 D 85 83 3 86 3 0 10 147 260 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 14 150 263 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 100 - G - - MR 87 86 3 89 3 1 14 148 262 -8.649 -0.015 -6.967 -2.232 -3.541 1.836 -2.926 D 88 86 3 89 3 0 9 146 259 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 13 149 262 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 99 - A - - MR 90 89 3 92 3 1 14 147 261 -8.649 -0.015 -6.967 1.532 -1.290 -1.716 -1.340 D 91 89 3 92 3 0 8 145 258 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 12 148 261 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 98 - G - - MR 93 92 3 95 3 1 13 146 260 -8.649 -0.015 -6.967 -2.232 -3.541 1.836 -2.926 D 94 92 3 95 3 0 7 144 257 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 12 147 260 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 97 - C - - MR 96 95 3 98 3 1 12 145 259 -8.649 -0.015 -6.967 -1.439 1.370 -2.297 -0.247 D 97 95 3 98 3 0 6 143 256 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 11 146 259 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 96 - G - - MR 99 98 3 101 3 1 11 144 258 -8.649 -0.015 -6.967 -2.232 -3.541 1.836 -2.926 D 100 98 3 101 3 0 6 142 255 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 10 145 258 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 95 - G - - MR 102 101 3 104 3 1 11 143 257 -8.649 -0.015 -6.967 -2.232 -3.541 1.836 -2.926 D 103 101 3 104 3 0 5 141 254 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 9 144 257 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 94 - U - - MR 105 104 3 107 3 1 10 142 256 -8.649 -0.015 -6.967 -2.080 -1.975 -2.838 1.752 D 106 104 3 107 3 0 4 140 253 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 9 143 256 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 93 - g - - MR 108 107 3 110 3 1 9 141 255 -8.649 -0.015 -6.967 -0.059 -0.050 0.412 -0.429 D 109 107 3 110 3 0 3 139 252 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 8 142 255 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 92 - A - - MR 111 110 3 113 5 1 9 140 254 -7.370 -0.209 -3.062 -7.398 -8.289 1.826 -3.006 -2.576 -2.613 D 112 110 3 113 5 0 3 139 252 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 6 141 254 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 13 91 g c - - MP 114 113 3 118 6 2 9 140 253 -9.157 -9.097 -0.020 -7.873 -8.153 -8.548 -2.019 -0.498 -1.717 1.271 -2.234 -2.978 1.274 -2.536 -2.272 2.070 -2.801 -0.039 1.040 -2.270 -0.149 -0.498 ML 115 113 3 118 6 1 5 138 251 -7.142 -7.489 -0.560 -1.897 -7.338 -4.868 1.260 -1.188 -0.928 -0.644 MR 116 113 3 118 6 1 4 137 250 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 134 247 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 6 139 252 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 6 139 252 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 90 G C - - MP 120 119 6 124 6 2 8 138 251 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -5.353 -3.391 -5.536 -0.223 -6.086 -4.923 -1.298 -5.803 -4.703 3.756 -5.001 -1.120 -1.669 -4.861 -3.373 -4.403 ML 121 119 6 124 6 1 4 136 249 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 2 135 249 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 133 246 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 5 137 250 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 5 137 250 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 15 89 C G - - MP 126 125 6 130 4 2 6 136 249 -7.282 -7.489 -0.042 -5.904 -4.813 -4.794 -4.448 -0.964 -3.071 -4.814 3.581 -3.908 -4.499 -0.782 -4.742 -2.771 0.718 -4.843 -0.763 -3.318 ML 127 125 6 130 4 1 3 135 248 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 133 247 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 132 245 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 4 135 249 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 4 135 248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 16 - g - - - ML 132 131 6 134 3 1 5 134 247 -8.277 -0.017 -6.931 0.103 -1.531 0.992 -0.758 D 133 131 6 134 3 0 0 131 244 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 3 134 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 17 - a - - - ML 135 134 3 137 3 1 5 133 246 -8.277 -0.017 -6.931 0.789 -0.860 -0.827 0.212 D 136 134 3 137 3 0 0 130 243 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 3 133 246 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 18 - u - - - ML 138 137 3 140 3 1 4 132 245 -8.277 -0.017 -6.931 -0.313 -0.329 -0.805 0.869 D 139 137 3 140 3 0 0 129 242 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 2 132 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 19 - G - - - ML 141 140 3 143 3 1 3 131 244 -8.277 -0.017 -6.931 -0.680 -2.436 1.545 -1.870 D 142 140 3 143 3 0 0 128 242 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 2 131 244 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 20 - A - - - ML 144 143 3 146 3 1 3 130 243 -8.277 -0.017 -6.931 1.826 -3.006 -2.576 -2.613 D 145 143 3 146 3 0 0 128 241 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 2 130 243 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 21 - u - - - ML 147 146 3 149 3 1 2 129 242 -8.649 -0.015 -6.967 -0.217 0.129 -0.642 0.491 D 148 146 3 149 3 0 0 127 240 -5.620 -0.734 -1.403 IL 149 149 3 149 3 1 1 129 242 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 88 - A - - MR 150 149 3 152 3 1 2 128 241 -8.649 -0.015 -6.967 1.826 -3.006 -2.576 -2.613 D 151 149 3 152 3 0 0 125 239 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 128 241 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 87 - G - - MR 153 152 3 155 3 1 2 127 240 -8.649 -0.015 -6.967 -1.208 -2.129 1.508 -1.015 D 154 152 3 155 3 0 0 124 238 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 127 240 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 86 - g - - MR 156 155 3 158 5 1 1 126 239 -7.370 -0.032 -7.186 -7.398 -8.289 0.004 -0.198 0.185 -0.016 D 157 155 3 158 5 0 0 123 237 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 126 239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 22 85 g c - - MP 159 158 3 163 6 2 2 125 238 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -1.945 -2.009 -2.118 1.158 -1.464 -2.948 1.674 -1.734 -1.436 1.869 -2.738 0.073 1.218 -2.243 -0.172 -1.323 ML 160 158 3 163 6 1 1 122 236 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 122 235 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 117 230 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 124 237 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 124 237 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 23 84 C G - - MP 165 164 6 169 6 2 2 123 236 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -5.244 -5.209 -4.812 -1.392 -3.395 -5.131 3.719 -4.275 -4.893 -1.232 -5.070 -3.174 0.038 -5.265 -1.127 -3.712 ML 166 164 6 169 6 1 1 120 234 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 120 233 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 115 229 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 122 235 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 122 235 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 24 83 g c - - MP 171 170 6 175 6 2 2 121 234 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -3.302 -2.614 -3.300 1.275 -3.242 -4.029 1.306 -3.521 -3.446 2.596 -3.877 -0.400 1.410 -3.331 -0.840 -2.260 ML 172 170 6 175 6 1 1 118 232 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 118 231 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 114 227 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 120 233 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 120 233 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 25 82 C G - - MP 177 176 6 181 6 2 2 119 232 -9.244 -9.184 -0.019 -7.960 -8.240 -8.635 -4.179 -4.129 -3.970 -0.297 -2.749 -4.469 3.133 -3.510 -3.978 -0.094 -4.326 -2.070 1.895 -4.276 -0.405 -2.813 ML 178 176 6 181 6 1 1 116 230 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 116 229 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 112 225 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 118 231 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 118 231 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 26 81 G C - - MP 183 182 6 187 6 2 2 117 230 -5.929 -9.184 -0.054 -7.960 -8.240 -6.467 -4.361 -2.940 -4.336 0.723 -4.876 -4.594 0.111 -4.727 -4.244 3.475 -4.571 -0.618 -0.543 -4.125 -2.221 -3.253 ML 184 182 6 187 6 1 1 114 228 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 114 227 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 111 224 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 116 229 -2.793 -3.056 -0.629 -4.711 -5.487 -5.147 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 116 229 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 28 80 g c - - MP 189 188 6 193 6 2 2 115 228 -9.232 -9.171 -0.062 -4.940 -8.227 -8.622 -2.453 -2.165 -2.563 1.473 -2.643 -3.343 1.300 -1.976 -2.687 2.424 -2.466 -0.143 0.881 -2.633 -0.594 -1.325 ML 190 188 6 193 6 1 1 112 226 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 112 225 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 110 223 -9.267 -7.966 -3.763 -4.445 -4.462 -0.270 IL 193 193 5 193 6 1 1 114 227 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 114 227 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 29 79 c g - - MP 195 194 6 199 6 2 2 113 226 -4.131 -9.129 -0.103 -7.906 -8.185 -8.580 -1.591 -1.547 -2.163 1.077 -1.098 -3.010 2.057 -2.401 -2.209 1.105 -2.772 -0.587 1.725 -2.305 -0.045 -1.339 ML 196 194 6 199 6 1 1 110 223 -6.749 -7.095 -1.810 -1.504 -6.945 -1.567 0.007 -0.884 0.729 -0.329 MR 197 194 6 199 6 1 1 108 221 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 110 223 -9.267 -7.966 -2.223 -4.445 -4.462 -0.538 IL 199 199 5 199 6 1 1 112 225 -3.235 -3.498 -0.434 -5.153 -5.929 -5.590 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 112 225 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 31 78 c g - - MP 201 200 6 205 4 2 2 111 224 -7.186 -1.758 -0.557 -5.807 -3.175 -3.034 -3.242 0.692 -2.555 -4.043 2.531 -3.112 -3.221 1.216 -3.733 -0.655 1.800 -3.398 -0.042 -2.121 ML 202 200 6 205 4 1 1 103 216 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 102 215 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 110 224 -5.146 -1.454 -2.843 -1.097 IL 205 205 5 205 4 1 1 110 223 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 116 230 -0.235 -2.789 -7.504 0.000 0.000 0.000 0.000 [ MATL 47 ] 32 - a - - - ML 207 206 6 209 3 1 1 33 52 -8.277 -0.017 -6.931 0.308 0.237 -0.600 -0.115 D 208 206 6 209 3 0 0 32 51 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 33 - g - - - ML 210 209 3 212 3 1 1 32 51 -8.277 -0.017 -6.931 -0.011 -0.347 0.210 0.090 D 211 209 3 212 3 0 0 31 50 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 34 - a - - - ML 213 212 3 215 3 1 1 31 50 -8.277 -0.017 -6.931 0.285 -0.294 -0.358 0.246 D 214 212 3 215 3 0 0 29 49 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 35 - u - - - ML 216 215 3 218 3 1 1 30 49 -8.277 -0.017 -6.931 0.268 -0.176 -0.559 0.300 D 217 215 3 218 3 0 0 28 48 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 36 - c - - - ML 219 218 3 221 3 1 1 29 48 -8.277 -0.064 -4.629 -0.216 0.529 -0.710 0.117 D 220 218 3 221 3 0 0 27 47 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 37 - u - - - ML 222 221 3 224 3 1 1 28 47 -8.230 -0.292 -2.473 0.182 0.236 -1.007 0.251 D 223 221 3 224 3 0 0 26 45 -6.628 -2.141 -0.390 IL 224 224 3 224 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 38 - u - - - ML 225 224 3 227 3 1 1 27 46 -2.301 -0.346 -6.612 0.079 -0.199 -0.680 0.534 D 226 224 3 227 3 0 0 23 42 -7.887 -0.341 -2.279 IL 227 227 3 227 3 1 1 27 47 -1.408 -0.759 -4.951 0.000 0.000 0.000 0.000 [ MATL 54 ] 42 - C - - - ML 228 227 3 230 3 1 1 23 42 -8.277 -0.017 -6.931 -1.830 1.581 -2.681 -0.807 D 229 227 3 230 3 0 0 22 41 -6.174 -1.687 -0.566 IL 230 230 3 230 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 43 - G - - - ML 231 230 3 233 3 1 1 22 41 -8.277 -0.017 -6.931 -2.232 -3.541 1.836 -2.926 D 232 230 3 233 3 0 0 21 40 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 44 - G - - - ML 234 233 3 236 3 1 1 21 40 -8.277 -0.017 -6.931 -2.232 -3.541 1.836 -2.926 D 235 233 3 236 3 0 0 20 39 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 45 - U - - - ML 237 236 3 239 3 1 1 20 38 -8.277 -0.017 -6.931 -0.778 -0.176 -1.297 1.087 D 238 236 3 239 3 0 0 19 38 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 46 - C - - - ML 240 239 3 242 3 1 1 19 37 -8.277 -0.017 -6.931 -2.508 1.779 -3.337 -1.772 D 241 239 3 242 3 0 0 18 37 -6.174 -1.687 -0.566 IL 242 242 3 242 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 47 - G - - - ML 243 242 3 245 3 1 1 17 36 -8.277 -0.017 -6.931 -0.441 -2.275 1.460 -1.709 D 244 242 3 245 3 0 0 17 36 -6.174 -1.687 -0.566 IL 245 245 3 245 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 48 - C - - - ML 246 245 3 248 3 1 1 16 35 -8.277 -0.017 -6.931 -2.508 1.779 -3.337 -1.772 D 247 245 3 248 3 0 0 16 34 -6.174 -1.687 -0.566 IL 248 248 3 248 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 49 - C - - - ML 249 248 3 251 3 1 1 15 33 -8.277 -0.017 -6.931 -1.815 1.575 -2.667 -0.786 D 250 248 3 251 3 0 0 15 33 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 50 - u - - - ML 252 251 3 254 3 1 1 13 31 -8.277 -0.017 -6.931 -0.236 0.053 -0.516 0.500 D 253 251 3 254 3 0 0 13 32 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 51 - g - - - ML 255 254 3 257 2 1 1 1 1 * 0.000 -0.230 -0.427 0.288 0.242 D 256 254 3 257 2 0 0 0 0 * 0.000 IL 257 257 3 257 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 258 257 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c-di-GMP-II-GCG ACC RF03170 DESC c-di-GMP-II-GCG riboswitch aptamer LENG 85 MAXL 233 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 10:11:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03170/CM NSEQ 33 EFFN 6.054565 CKSUM 2725441014 STATS LOCAL MSV -8.9654 0.71872 STATS LOCAL VITERBI -9.7540 0.71872 STATS LOCAL FORWARD -3.6153 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62013 1.22395 1.12432 1.69724 1.38629 1.38629 1.38629 1.38629 0.17975 4.54229 1.87162 1.46634 0.26236 0.00000 * 1 1.53202 1.36975 1.55632 1.14312 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.02517 4.38771 4.38771 1.46634 0.26236 0.12963 2.10715 2 1.48510 1.33090 1.45569 1.28720 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 3 1.36738 1.36931 1.63314 1.21865 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 4 1.60614 1.20238 1.52353 1.26969 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 5 1.52293 1.25153 1.52454 1.27963 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 6 1.44388 1.40390 1.38596 1.31576 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 7 1.46624 1.24184 1.41263 1.44030 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.04855 4.54229 3.30379 1.46634 0.26236 1.09861 0.40547 8 1.64849 1.04623 1.67374 1.31358 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.02211 4.51585 4.51585 1.46634 0.26236 0.45720 1.00255 9 1.86547 1.60575 0.76518 1.71933 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 10 2.54179 3.67598 0.14248 3.54942 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 11 3.14132 4.12802 0.08045 4.01945 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 12 0.49631 1.83862 2.31057 2.01753 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 13 1.14131 1.91698 1.14017 1.54280 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 14 3.20380 4.07579 0.07998 3.94896 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 15 3.77718 0.16047 3.70893 2.29398 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 16 1.38764 2.88756 0.53312 2.22697 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 17 0.74219 2.18186 2.10257 1.24148 17 a - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 18 1.74573 1.64010 2.00246 0.70013 18 u - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 19 2.09121 3.73877 0.19988 3.38592 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 20 0.04464 4.42878 4.06314 4.23155 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 21 1.66875 1.20429 1.85896 1.03344 21 u - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 22 1.76257 1.38863 0.97994 1.59137 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 23 4.50694 0.06534 4.41284 3.21652 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 24 1.77928 2.00053 0.72612 1.55025 24 g - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 25 3.43589 0.42580 3.23318 1.29054 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 26 2.37085 2.89621 0.20784 3.24346 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.08943 2.97742 3.36326 0.37597 1.16034 1.09861 0.40547 27 1.54159 1.82276 0.74157 1.91044 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.02206 4.51802 4.51802 1.46634 0.26236 1.65846 0.21126 28 1.69361 1.13072 1.62635 1.21504 29 c - - < 1.38629 1.38629 1.38629 1.38629 0.28750 1.83312 2.40851 0.13128 2.09536 0.47943 0.96531 29 2.30549 0.84602 1.75277 1.21107 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.02335 4.46201 4.46201 1.46634 0.26236 0.21720 1.63356 30 1.16755 1.09872 1.85487 1.61395 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 31 1.48164 1.61409 1.13141 1.38197 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 32 1.18098 1.58538 1.62803 1.23157 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 33 1.19094 1.48256 1.80564 1.18862 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 34 1.68534 0.86390 1.93821 1.38973 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.06412 4.54229 2.96690 1.46634 0.26236 1.09861 0.40547 35 1.26951 1.10881 2.26953 1.25275 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.27651 4.50062 1.46762 1.46634 0.26236 1.92171 0.15824 36 1.35215 1.50762 1.90747 0.99041 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.35408 1.25891 4.25296 0.54086 0.87287 0.07819 2.58747 37 3.49510 0.15546 4.07669 2.33642 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 38 3.82170 4.81903 0.04402 4.33510 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 39 3.82170 4.81903 0.04402 4.33510 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 40 2.36751 1.50395 2.56115 0.49952 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 41 4.19003 0.05480 4.66150 3.54996 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 42 1.86505 3.60223 0.24940 3.25510 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 43 4.19003 0.05480 4.66150 3.54996 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 44 3.47966 0.15894 4.06419 2.31310 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 45 1.69330 1.26929 1.74016 1.02285 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 46 1.72124 1.69979 1.05102 1.24183 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.54792 0.88867 4.54229 2.29208 0.10653 1.09861 0.40547 47 1.39982 1.96774 0.73646 2.00410 78 g - - > 1.38629 1.38629 1.38629 1.38629 0.13058 4.54229 2.19135 1.46634 0.26236 1.09861 0.40547 48 1.23285 1.81061 1.04038 1.65202 79 g - - > 1.38629 1.38629 1.38629 1.38629 0.02398 4.43569 4.43569 1.46634 0.26236 0.41585 1.07816 49 2.22023 0.85340 1.70727 1.25846 80 c - - > 1.38629 1.38629 1.38629 1.38629 0.02206 4.51802 4.51802 1.46634 0.26236 0.47943 0.96531 50 3.47762 0.23592 2.78125 2.14288 81 C - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 51 1.38785 3.39714 0.39182 3.19187 82 G - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 52 1.67901 0.79471 1.85495 1.58342 83 c - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 53 3.50263 4.58095 0.05525 4.31372 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 54 1.64818 1.21554 1.34110 1.38833 85 c - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 55 1.47197 1.46971 1.15006 1.49648 86 g - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 56 2.86570 3.55325 0.20277 2.32324 87 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 57 0.04464 4.42878 4.06314 4.23155 88 A - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 58 2.52335 3.96148 0.13197 3.71299 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 59 4.45969 0.07496 4.24863 3.07113 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.19979 4.54229 1.76934 1.46634 0.26236 1.09861 0.40547 60 1.91712 1.00936 1.52369 1.30707 91 c - - > 1.38629 1.38629 1.38629 1.38629 0.02568 4.36818 4.36818 1.46634 0.26236 0.11774 2.19755 61 0.04464 4.42878 4.06314 4.23155 92 A - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 62 1.57466 1.32839 0.92619 2.02524 93 g - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 63 3.76278 3.55492 4.30806 0.06749 94 U - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 64 3.82170 4.81903 0.04402 4.33510 95 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 65 3.82170 4.81903 0.04402 4.33510 96 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 66 3.08493 0.28040 3.72896 1.74428 97 C - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 67 3.82170 4.81903 0.04402 4.33510 98 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 68 0.19671 2.45453 3.18678 2.96890 99 A - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 69 3.82170 4.81903 0.04402 4.33510 100 G - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 70 4.19003 0.05480 4.66150 3.54996 101 C - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 71 4.19003 0.05480 4.66150 3.54996 102 C - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 72 4.19003 0.05480 4.66150 3.54996 103 C - - - 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 73 3.82170 4.81903 0.04402 4.33510 104 G - - - 1.38629 1.38629 1.38629 1.38629 0.09252 4.54229 2.55462 1.46634 0.26236 1.09861 0.40547 74 0.68558 2.14036 1.45915 1.92307 105 A - - - 1.38629 1.38629 1.38629 1.38629 0.15883 1.99922 4.47286 0.16079 1.90699 0.24218 1.53671 75 4.12817 0.12899 3.95899 2.45543 107 C - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 76 3.20263 0.18722 3.48605 2.30799 108 C - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 77 1.79121 0.86859 1.49208 1.66710 109 c - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 78 1.59455 1.62545 0.94981 1.54477 110 g - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 79 1.53662 1.52812 1.14834 1.38315 111 g - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 80 1.39940 1.66304 1.19630 1.34177 112 g - - > 1.38629 1.38629 1.38629 1.38629 0.02153 4.54229 4.54229 1.46634 0.26236 1.09861 0.40547 81 1.52068 1.64587 1.18945 1.25807 113 g - - > 1.38629 1.38629 1.38629 1.38629 0.04136 4.54229 3.51115 1.46634 0.26236 1.09861 0.40547 82 1.43603 1.50799 1.11529 1.54667 114 g - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52289 4.52289 1.46634 0.26236 1.56951 0.23338 83 1.43327 1.87907 1.08289 1.30888 115 g - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52289 4.52289 1.46634 0.26236 1.56951 0.23338 84 1.44342 1.58418 1.11951 1.45962 116 g - - > 1.38629 1.38629 1.38629 1.38629 0.20826 4.52289 1.73076 1.46634 0.26236 1.56951 0.23338 85 1.34201 1.52681 1.24967 1.44880 117 g - - > 1.38629 1.38629 1.38629 1.38629 0.01328 4.32791 * 1.46634 0.26236 0.00000 * //