INFERNAL1/a [1.1.5 | Sep 2023] NAME c-di-GMP-II-GAG ACC RF03169 DESC c-di-GMP-II-GAG riboswitch aptamer STATES 262 NODES 66 CLEN 86 W 204 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 13:56:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03169/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 472 EFFN 7.969177 CKSUM 2893079519 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.90 EFP7GF -15.3661 0.71856 ECMLC 0.60306 -5.36808 3.06704 1600000 194256 0.006177 ECMGC 0.37926 -17.53535 -3.85426 1600000 71690 0.005580 ECMLI 0.58842 -4.21876 4.07894 1600000 158351 0.007578 ECMGI 0.39854 -13.00897 -0.99696 1600000 47987 0.008336 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 204 344 -9.834 -9.773 -0.115 -4.263 -6.494 -6.475 IL 1 1 2 1 6 1 32 205 345 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 33 205 345 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 201 c g - - MP 3 2 3 7 6 2 38 204 344 -9.732 -9.672 -0.014 -8.448 -8.728 -9.123 -1.227 -1.187 -0.548 1.051 -1.084 -1.164 1.518 -1.303 -1.265 1.056 -1.475 -0.239 1.286 -1.634 0.195 -0.779 ML 4 2 3 7 6 1 31 202 342 -7.312 -7.658 -1.360 -0.828 -7.508 -5.037 0.170 -0.131 -0.415 0.277 MR 5 2 3 7 6 1 30 202 342 -7.214 -5.943 -1.529 -5.921 -0.844 -4.135 0.268 -0.252 -0.174 0.097 D 6 2 3 7 6 0 24 197 337 -9.391 -8.090 -3.351 -3.674 -3.462 -0.459 IL 7 7 5 7 6 1 32 203 343 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 32 203 343 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 200 c g - - MP 9 8 6 13 6 2 38 202 342 -9.770 -9.709 -0.013 -8.485 -8.765 -9.160 -1.043 -1.263 -0.874 0.999 -0.674 -0.876 1.523 -1.293 -1.022 1.044 -0.784 -0.331 1.142 -1.379 0.090 -0.959 ML 10 8 6 13 6 1 30 200 340 -7.027 -7.373 -0.985 -1.193 -7.223 -4.752 0.165 -0.163 -0.338 0.256 MR 11 8 6 13 6 1 29 200 340 -7.166 -5.895 -1.371 -5.873 -0.961 -4.086 0.293 -0.130 -0.333 0.093 D 12 8 6 13 6 0 23 194 334 -9.214 -7.912 -3.709 -4.391 -4.409 -0.281 IL 13 13 5 13 6 1 31 201 341 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 32 201 341 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 199 c g - - MP 15 14 6 19 6 2 37 200 340 -9.810 -9.749 -0.013 -8.525 -8.805 -9.200 -1.020 -0.917 -1.271 1.073 -1.216 -1.385 1.405 -1.366 -0.906 1.186 -0.630 0.202 1.156 -1.679 -0.068 -0.968 ML 16 14 6 19 6 1 29 198 338 -6.573 -6.919 -1.222 -1.022 -6.769 -4.298 0.490 -0.453 -0.183 -0.022 MR 17 14 6 19 6 1 28 198 337 -7.013 -5.742 -1.651 -5.721 -0.809 -3.934 0.325 -0.374 -0.240 0.175 D 18 14 6 19 6 0 22 193 333 -9.214 -7.912 -3.304 -4.391 -4.409 -0.325 IL 19 19 5 19 6 1 31 199 339 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 31 199 339 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 198 c g - - MP 21 20 6 25 6 2 35 198 338 -9.820 -9.759 -0.015 -8.217 -8.276 -9.210 -0.973 -1.267 -0.861 1.104 -1.055 -1.038 1.582 -1.765 -1.275 1.000 -1.545 -0.293 1.239 -1.412 0.269 -0.721 ML 22 20 6 25 6 1 28 196 336 -6.411 -6.757 -1.101 -1.166 -6.607 -4.136 0.287 -0.499 0.152 -0.058 MR 23 20 6 25 6 1 28 196 336 -7.013 -5.742 -1.573 -5.721 -0.854 -3.934 0.464 -0.452 -0.188 0.017 D 24 20 6 25 6 0 22 191 331 -9.178 -7.876 -3.244 -4.355 -4.373 -0.338 IL 25 25 5 25 6 1 30 198 337 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 30 197 337 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 197 c g - - MP 27 26 6 31 6 2 34 196 336 -9.828 -6.556 -0.084 -4.624 -8.452 -9.219 -0.931 -0.602 -0.848 1.061 -0.966 -1.282 1.534 -1.697 -1.569 1.139 -1.562 -0.318 1.193 -1.247 0.188 -0.944 ML 28 26 6 31 6 1 28 194 334 -6.271 -6.617 -1.280 -1.026 -6.467 -3.996 0.338 -0.377 -0.225 0.151 MR 29 26 6 31 6 1 27 194 334 -7.015 -5.744 -1.570 -5.722 -0.856 -3.936 0.323 -0.373 -0.242 0.178 D 30 26 6 31 6 0 21 189 329 -9.138 -7.836 -3.633 -4.315 -4.333 -0.298 IL 31 31 5 31 6 1 29 196 335 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 30 195 335 -2.537 -0.447 -6.048 -4.216 -5.322 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 195 c g - - MP 33 32 6 37 6 2 33 195 334 -9.774 -5.778 -0.058 -6.379 -7.259 -9.165 -0.805 -0.953 -0.578 1.092 -1.262 -1.836 1.542 -1.920 -1.435 1.268 -0.897 -0.276 1.124 -1.955 0.170 -0.916 ML 34 32 6 37 6 1 28 193 332 -7.122 -7.468 -1.052 -1.109 -7.318 -4.847 0.249 -0.005 -0.490 0.142 MR 35 32 6 37 6 1 26 192 332 -7.005 -5.734 -1.643 -5.712 -0.815 -3.926 0.439 -0.435 -0.185 0.036 D 36 32 6 37 6 0 21 187 327 -9.138 -7.836 -3.393 -4.315 -4.333 -0.324 IL 37 37 5 37 6 1 29 194 333 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 29 194 333 -2.624 -0.416 -6.135 -4.303 -5.409 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 193 g c - - MP 39 38 6 43 6 2 32 193 332 -9.788 -9.727 -0.018 -8.504 -7.493 -9.179 -1.106 -0.742 -1.289 1.153 -1.783 -2.644 1.427 -1.818 -1.508 1.717 -2.077 -0.225 1.214 -1.751 -0.010 -0.894 ML 40 38 6 43 6 1 27 191 331 -6.878 -7.224 -0.758 -1.535 -7.074 -4.603 0.225 -0.193 -0.420 0.274 MR 41 38 6 43 6 1 26 190 330 -7.112 -5.841 -1.465 -5.819 -0.904 -4.033 0.193 -0.041 -0.466 0.215 D 42 38 6 43 6 0 20 186 326 -9.117 -7.815 -3.378 -4.294 -4.312 -0.329 IL 43 43 5 43 6 1 28 192 332 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 28 192 331 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 192 c g - - MP 45 44 6 49 6 2 30 191 330 -9.824 -9.763 -0.018 -7.321 -8.819 -9.214 -1.373 -1.958 -1.679 1.134 -1.802 -2.234 2.050 -1.822 -1.862 1.431 -2.177 -0.450 1.183 -2.031 0.001 -1.047 ML 46 44 6 49 6 1 25 188 328 -6.299 -6.646 -1.240 -1.054 -6.495 -4.025 0.373 -0.405 -0.077 0.003 MR 47 44 6 49 6 1 24 188 328 -7.099 -5.828 -1.418 -5.806 -0.940 -4.020 0.539 -0.505 -0.279 0.027 D 48 44 6 49 6 0 20 184 324 -9.096 -7.794 -3.120 -4.273 -4.291 -0.366 IL 49 49 5 49 6 1 27 190 330 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 27 190 329 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 191 g c - - MP 51 50 6 55 6 2 28 189 328 -9.829 -9.768 -0.013 -8.545 -8.824 -9.219 -2.099 -1.995 -2.251 1.036 -1.989 -2.000 1.230 -2.580 -1.985 2.375 -2.694 -0.090 1.274 -2.200 -0.486 -1.500 ML 52 50 6 55 6 1 24 187 327 -6.358 -6.704 -1.164 -1.113 -6.554 -4.084 0.316 -0.369 -0.108 0.074 MR 53 50 6 55 6 1 23 186 326 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 19 183 323 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 26 188 328 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 26 188 327 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 190 G C - - MP 57 56 6 61 6 2 26 187 326 -9.834 -9.773 -0.023 -7.823 -7.102 -9.224 -3.738 -2.482 -3.930 1.387 -4.326 -4.099 0.347 -4.572 -4.334 3.220 -4.607 -0.312 -0.083 -3.804 -2.081 -2.486 ML 58 56 6 61 6 1 23 185 325 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 21 185 324 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 19 182 322 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 24 186 326 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 24 186 326 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 189 G C - - MP 63 62 6 67 4 2 24 185 325 -7.726 -7.607 -0.048 -5.455 -3.770 -2.116 -3.977 0.880 -5.010 -4.568 -0.072 -4.640 -2.609 3.384 -3.814 -0.320 -0.314 -3.442 -2.164 -2.951 ML 64 62 6 67 4 1 22 184 324 -3.799 -3.981 -0.490 -2.711 0.518 -0.489 -0.203 -0.019 MR 65 62 6 67 4 1 20 183 323 -4.963 -3.991 -1.535 -0.837 0.295 -0.079 -0.430 0.116 D 66 62 6 67 4 0 18 182 322 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 23 185 324 -1.714 -2.398 -1.084 -4.883 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 23 184 324 -1.463 -0.783 -4.163 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - A - - - ML 69 68 6 71 3 1 23 183 323 -9.646 -0.009 -7.622 1.524 -1.915 -0.860 -1.702 D 70 68 6 71 3 0 17 181 321 -5.937 -0.556 -1.720 IL 71 71 3 71 3 1 21 183 323 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 187 - a - - MR 72 71 3 74 3 1 22 182 322 -9.668 -0.007 -7.986 0.897 -1.343 0.383 -1.184 D 73 71 3 74 3 0 15 179 319 -6.421 -1.508 -0.651 IR 74 74 3 74 3 1 20 182 322 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 186 - G - - MR 75 74 3 77 3 1 21 181 321 -9.670 -0.007 -7.988 -3.941 -5.431 1.953 -4.676 D 76 74 3 77 3 0 14 178 318 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 19 181 321 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 185 - C - - MR 78 77 3 80 3 1 20 180 320 -9.670 -0.007 -7.988 -3.821 1.906 -3.879 -3.141 D 79 77 3 80 3 0 14 177 317 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 18 180 320 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 184 - C - - MR 81 80 3 83 3 1 19 179 319 -9.670 -0.007 -7.988 -4.287 1.926 -4.898 -3.101 D 82 80 3 83 3 0 13 176 316 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 17 179 319 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 183 - A - - MR 84 83 3 86 3 1 19 178 318 -9.670 -0.007 -7.988 1.955 -4.890 -4.342 -4.605 D 85 83 3 86 3 0 12 175 315 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 17 178 318 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 182 - G - - MR 87 86 3 89 3 1 18 177 317 -9.670 -0.007 -7.988 -3.941 -5.431 1.953 -4.676 D 88 86 3 89 3 0 11 174 314 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 16 177 317 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 181 - A - - MR 90 89 3 92 3 1 17 176 316 -9.670 -0.007 -7.988 1.455 -0.481 -1.951 -1.821 D 91 89 3 92 3 0 11 173 313 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 15 176 316 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 180 - G - - MR 93 92 3 95 3 1 16 175 315 -9.670 -0.007 -7.988 -3.213 -5.095 1.932 -4.415 D 94 92 3 95 3 0 10 172 312 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 15 175 315 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 179 - C - - MR 96 95 3 98 3 1 16 174 314 -9.670 -0.007 -7.988 -2.283 1.269 -3.264 0.357 D 97 95 3 98 3 0 9 171 311 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 14 174 314 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 178 - G - - MR 99 98 3 101 3 1 15 173 313 -9.670 -0.007 -7.988 -2.315 -3.843 1.862 -3.389 D 100 98 3 101 3 0 8 170 310 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 13 173 313 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 177 - G - - MR 102 101 3 104 3 1 14 172 312 -9.670 -0.007 -7.988 -1.366 -3.030 1.737 -2.676 D 103 101 3 104 3 0 7 169 309 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 12 172 312 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 176 - U - - MR 105 104 3 107 3 1 13 171 311 -9.670 -0.007 -7.988 -2.247 -1.953 -2.941 1.766 D 106 104 3 107 3 0 6 168 308 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 11 171 311 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 175 - g - - MR 108 107 3 110 3 1 12 170 310 -9.670 -0.007 -7.988 -0.043 -0.114 0.647 -0.891 D 109 107 3 110 3 0 5 167 307 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 10 170 310 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 174 - A - - MR 111 110 3 113 5 1 12 169 309 -6.403 -0.034 -7.649 -8.378 -8.129 1.901 -3.724 -3.245 -3.572 D 112 110 3 113 5 0 4 167 306 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 9 169 309 -2.491 -0.464 -6.002 -4.170 -5.275 0.000 0.000 0.000 0.000 [ MATP 27 ] 14 172 g c - - MP 114 113 3 118 6 2 12 168 308 -9.830 -9.770 -0.013 -8.546 -8.826 -9.221 -1.492 -0.848 -1.067 0.968 -1.783 -2.445 1.449 -2.345 -1.977 2.147 -2.116 -0.420 1.027 -1.897 -0.189 -1.290 ML 115 113 3 118 6 1 6 166 306 -6.282 -6.628 -1.264 -1.037 -6.478 -4.007 0.469 -0.456 -0.189 0.013 MR 116 113 3 118 6 1 5 165 305 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 2 162 302 -9.102 -7.800 -3.077 -4.279 -4.296 -0.372 IL 118 118 5 118 6 1 8 167 307 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 8 167 307 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 15 171 G C - - MP 120 119 6 124 6 2 10 166 306 -9.834 -9.773 -0.013 -8.550 -8.829 -9.224 -4.332 -2.575 -4.175 0.961 -5.241 -3.781 -0.230 -4.847 -3.777 3.436 -4.772 -0.417 -0.619 -2.739 -2.357 -3.146 ML 121 119 6 124 6 1 5 164 304 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 4 163 303 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 1 161 301 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 7 165 305 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 7 165 305 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 16 170 C G - - MP 126 125 6 130 4 2 8 164 304 -5.412 -8.596 -0.061 -6.031 -6.161 -6.337 -5.552 -2.499 -3.951 -5.745 3.769 -4.859 -5.644 -2.421 -5.782 -4.531 -0.609 -6.047 0.059 -4.440 ML 127 125 6 130 4 1 4 163 303 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 2 162 301 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 1 160 300 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 7 163 303 -2.000 -2.369 -0.920 -5.169 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 6 163 303 -1.446 -0.790 -4.191 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - u - - - ML 132 131 6 134 3 1 7 162 302 -9.328 -0.015 -6.798 0.047 -0.817 0.073 0.430 D 133 131 6 134 3 0 1 159 299 -6.407 -1.733 -0.541 IL 134 134 3 134 3 1 5 162 302 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - a - - - ML 135 134 3 137 3 1 6 161 301 -9.323 -0.008 -7.977 0.441 -0.228 -0.566 0.154 D 136 134 3 137 3 0 0 159 298 -6.499 -1.269 -0.801 IL 137 137 3 137 3 1 4 161 301 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - u - - - ML 138 137 3 140 3 1 5 160 300 -9.336 -0.012 -7.288 -0.009 -0.235 -0.948 0.712 D 139 137 3 140 3 0 0 157 297 -6.235 -1.748 -0.537 IL 140 140 3 140 3 1 4 160 300 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - G - - - ML 141 140 3 143 3 1 4 159 299 -9.333 -0.008 -7.987 -2.313 -2.687 1.810 -2.862 D 142 140 3 143 3 0 0 157 296 -6.314 -1.640 -0.585 IL 143 143 3 143 3 1 3 159 299 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - A - - - ML 144 143 3 146 3 1 4 158 298 -9.335 -0.010 -7.498 1.829 -2.585 -2.682 -2.992 D 145 143 3 146 3 0 0 156 296 -6.257 -1.770 -0.528 IL 146 146 3 146 3 1 2 158 298 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - c - - - ML 147 146 3 149 3 1 3 157 297 -5.904 -0.046 -6.098 0.102 0.446 -1.486 0.272 D 148 146 3 149 3 0 0 155 295 -5.703 -0.681 -1.486 IL 149 149 3 149 3 1 2 157 297 -2.095 -0.481 -4.334 0.000 0.000 0.000 0.000 [ MATR 36 ] - 167 - A - - MR 150 149 3 152 3 1 3 156 296 -9.655 -0.008 -7.972 1.834 -3.365 -2.351 -2.826 D 151 149 3 152 3 0 0 154 293 -6.677 -1.350 -0.742 IR 152 152 3 152 3 1 1 156 296 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 166 - G - - MR 153 152 3 155 3 1 2 155 295 -9.665 -0.014 -6.880 -1.922 -3.176 1.778 -2.347 D 154 152 3 155 3 0 0 153 292 -6.499 -1.375 -0.729 IR 155 155 3 155 3 1 1 155 295 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 165 - g - - MR 156 155 3 158 5 1 1 154 294 -6.951 -0.027 -8.159 -8.372 -8.062 -0.861 0.167 0.682 -0.468 D 157 155 3 158 5 0 0 152 291 -5.426 -0.662 -3.052 -4.483 -2.478 IR 158 158 3 158 5 1 1 154 294 -2.456 -0.477 -5.967 -4.135 -5.241 0.000 0.000 0.000 0.000 [ MATP 39 ] 25 163 c g - - MP 159 158 3 163 6 2 3 153 293 -9.041 -9.771 -0.017 -8.548 -7.749 -9.222 -1.659 -0.259 -2.004 0.984 -1.404 -2.402 2.089 -2.124 -2.154 1.541 -2.572 -0.339 1.026 -2.173 -0.274 -1.349 ML 160 158 3 163 6 1 1 150 290 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 150 290 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 145 285 -9.106 -7.804 -3.047 -4.283 -4.301 -0.376 IL 163 163 5 163 6 1 1 152 292 -2.598 -2.861 -0.747 -4.516 -5.292 -4.953 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 152 292 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 27 162 C G - - MP 165 164 6 169 6 2 3 151 291 -9.830 -9.770 -0.013 -8.546 -8.826 -9.221 -2.759 -2.832 -3.589 0.340 -2.342 -4.434 3.072 -2.831 -3.553 0.554 -3.742 -1.433 1.320 -3.750 -0.276 -2.487 ML 166 164 6 169 6 1 1 148 288 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 148 288 -7.053 -5.782 -1.497 -5.761 -0.894 -3.974 0.419 -0.435 -0.250 0.114 D 168 164 6 169 6 0 0 142 282 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 150 290 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 150 290 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 28 161 g c - - MP 171 170 6 175 6 2 3 149 289 -9.834 -6.309 -0.033 -7.665 -8.829 -9.224 -2.870 -2.521 -2.865 0.939 -2.538 -3.556 1.586 -2.790 -3.089 2.535 -3.412 -0.475 1.309 -2.936 -0.628 -2.025 ML 172 170 6 175 6 1 1 146 286 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 146 286 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 140 280 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 148 288 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 148 288 -2.426 -0.497 -5.088 -4.271 -5.377 0.000 0.000 0.000 0.000 [ MATP 42 ] 29 158 c g - - MP 177 176 6 181 6 2 2 147 287 -5.757 -9.767 -0.038 -8.544 -8.824 -9.219 -2.462 -2.605 -2.028 0.731 -1.792 -2.779 2.720 -2.511 -2.556 0.844 -2.951 -0.979 1.348 -2.781 -0.045 -1.793 ML 178 176 6 181 6 1 1 144 284 -3.833 -6.717 -1.347 -1.126 -6.567 -4.096 0.456 -0.568 0.028 -0.099 MR 179 176 6 181 6 1 1 144 283 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 138 278 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 146 286 -2.988 -3.251 -0.532 -4.907 -5.683 -5.343 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 146 286 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 31 157 G C - - MP 183 182 6 187 6 2 2 145 285 -6.232 -9.773 -0.034 -8.550 -8.201 -8.428 -3.991 -2.486 -3.866 1.060 -4.266 -4.498 0.868 -4.454 -4.232 3.160 -3.424 -0.001 0.012 -3.587 -1.673 -2.739 ML 184 182 6 187 6 1 1 142 282 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 141 281 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 135 275 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 144 284 -2.600 -2.989 -0.676 -4.801 -5.577 -5.238 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 144 284 -2.422 -0.491 -5.934 -4.101 -5.207 0.000 0.000 0.000 0.000 [ MATP 44 ] 34 155 g c - - MP 189 188 6 193 6 2 2 143 283 -9.830 -9.770 -0.018 -8.546 -7.460 -9.221 -1.652 -1.770 -1.930 1.078 -1.643 -2.572 1.471 -2.346 -1.800 2.068 -2.536 -0.115 1.241 -2.246 0.033 -1.373 ML 190 188 6 193 6 1 1 140 280 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 138 278 -7.020 -5.749 -1.658 -5.727 -0.804 -3.941 0.392 -0.494 0.011 -0.044 D 192 188 6 193 6 0 0 133 273 -9.098 -7.796 -3.105 -4.275 -4.293 -0.368 IL 193 193 5 193 6 1 1 142 282 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 142 282 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 35 154 c g - - MP 195 194 6 199 6 2 2 141 281 -5.527 -9.766 -0.048 -7.704 -8.823 -8.543 -1.756 -1.755 -1.752 1.088 -0.175 -2.801 1.779 -2.346 -1.718 1.434 -2.424 -0.562 1.488 -2.065 0.013 -1.315 ML 196 194 6 199 6 1 1 137 277 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 135 275 -4.682 -5.840 -1.749 -3.880 -0.952 -4.032 0.289 -0.247 -0.162 0.059 D 198 194 6 199 6 0 0 129 269 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 140 280 -2.318 -2.073 -1.048 -4.672 -5.853 -5.514 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 139 279 -2.586 -0.508 -4.215 -4.265 -5.371 0.000 0.000 0.000 0.000 [ MATP 46 ] 38 152 c g - - MP 201 200 6 205 4 2 2 139 279 -8.363 -1.402 -0.711 -6.984 -2.347 -2.890 -2.982 0.667 -2.161 -3.457 2.677 -3.103 -3.005 1.476 -3.135 -0.649 1.088 -3.126 -0.016 -2.060 ML 202 200 6 205 4 1 1 134 273 -3.984 -2.409 -0.703 -2.896 0.261 -0.051 -0.398 0.107 MR 203 200 6 205 4 1 1 126 266 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 126 266 -4.606 -3.706 -2.303 -0.557 IL 205 205 5 205 4 1 1 136 276 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 144 284 -0.190 -3.056 -8.288 0.000 0.000 0.000 0.000 [ MATL 47 ] 39 - c - - - ML 207 206 6 209 3 1 1 95 190 -9.334 -0.034 -5.531 -0.744 0.844 -1.040 0.165 D 208 206 6 209 3 0 0 91 186 -6.275 -1.788 -0.520 IL 209 209 3 209 3 1 1 95 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 40 - g - - - ML 210 209 3 212 3 1 1 94 189 -9.309 -0.035 -5.482 0.216 -0.298 0.350 -0.414 D 211 209 3 212 3 0 0 89 183 -6.755 -1.283 -0.786 IL 212 212 3 212 3 1 1 94 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 41 - c - - - ML 213 212 3 215 3 1 1 93 188 -1.615 -0.989 -2.558 -0.243 0.466 -1.245 0.435 D 214 212 3 215 3 0 0 73 168 -6.873 -1.606 -0.593 IL 215 215 3 215 3 1 1 98 192 -0.281 -2.537 -7.752 0.000 0.000 0.000 0.000 [ MATL 50 ] 91 - a - - - ML 216 215 3 218 3 1 1 28 46 -9.053 -0.010 -7.707 0.777 -0.468 -0.360 -0.350 D 217 215 3 218 3 0 0 27 45 -8.583 -0.207 -2.932 IL 218 218 3 218 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 92 - a - - - ML 219 218 3 221 3 1 1 27 45 -9.337 -0.008 -7.992 0.631 0.018 -0.849 -0.178 D 220 218 3 221 3 0 0 26 45 -6.203 -1.716 -0.552 IL 221 221 3 221 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 93 - c - - - ML 222 221 3 224 3 1 1 25 44 -9.337 -0.008 -7.992 -0.063 0.326 -0.736 0.250 D 223 221 3 224 3 0 0 25 44 -6.203 -1.716 -0.552 IL 224 224 3 224 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 94 - a - - - ML 225 224 3 227 3 1 1 24 43 -9.337 -0.008 -7.992 0.356 0.101 -0.700 0.045 D 226 224 3 227 3 0 0 24 43 -6.203 -1.626 -0.594 IL 227 227 3 227 3 1 1 28 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 95 - C - - - ML 228 227 3 230 3 1 1 23 42 -9.339 -0.008 -7.993 -2.004 1.545 -2.373 -0.645 D 229 227 3 230 3 0 0 23 42 -6.174 -1.687 -0.566 IL 230 230 3 230 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 96 - G - - - ML 231 230 3 233 3 1 1 22 41 -9.339 -0.008 -7.993 -2.439 -3.383 1.831 -2.623 D 232 230 3 233 3 0 0 22 40 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 97 - G - - - ML 234 233 3 236 3 1 1 21 40 -9.339 -0.008 -7.993 -3.583 -4.908 1.926 -3.605 D 235 233 3 236 3 0 0 21 39 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 98 - u - - - ML 237 236 3 239 3 1 1 20 38 -9.339 -0.008 -7.993 -0.959 -0.221 -0.333 0.875 D 238 236 3 239 3 0 0 20 38 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 99 - C - - - ML 240 239 3 242 3 1 1 19 37 -9.339 -0.008 -7.993 -4.080 1.904 -4.725 -2.648 D 241 239 3 242 3 0 0 19 37 -6.174 -1.687 -0.566 IL 242 242 3 242 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 100 - G - - - ML 243 242 3 245 3 1 1 18 36 -9.339 -0.008 -7.993 0.330 -2.612 1.252 -2.344 D 244 242 3 245 3 0 0 18 36 -6.174 -1.687 -0.566 IL 245 245 3 245 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 101 - C - - - ML 246 245 3 248 3 1 1 16 35 -9.339 -0.008 -7.993 -3.151 1.843 -3.510 -2.233 D 247 245 3 248 3 0 0 17 35 -6.174 -1.687 -0.566 IL 248 248 3 248 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 102 - C - - - ML 249 248 3 251 3 1 1 15 34 -9.339 -0.008 -7.993 -2.339 1.679 -3.258 -1.011 D 250 248 3 251 3 0 0 15 34 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 103 - u - - - ML 252 251 3 254 3 1 1 14 32 -9.339 -0.008 -7.993 -0.034 -0.439 0.088 0.289 D 253 251 3 254 3 0 0 14 33 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 104 - g - - - ML 255 254 3 257 3 1 1 12 31 -9.339 -0.599 -1.564 -0.009 -0.588 0.629 -0.333 D 256 254 3 257 3 0 0 13 32 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 105 - a - - - ML 258 257 3 260 2 1 1 1 1 * 0.000 0.274 -0.442 0.128 -0.055 D 259 257 3 260 2 0 0 0 0 * 0.000 IL 260 260 3 260 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 261 260 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c-di-GMP-II-GAG ACC RF03169 DESC c-di-GMP-II-GAG riboswitch aptamer LENG 86 MAXL 239 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 13:56:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03169/CM NSEQ 472 EFFN 36.554504 CKSUM 2893079519 STATS LOCAL MSV -8.7586 0.71856 STATS LOCAL VITERBI -9.6181 0.71856 STATS LOCAL FORWARD -3.7420 0.71856 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58787 1.20848 1.08742 1.83318 1.38629 1.38629 1.38629 1.38629 0.01236 5.48014 4.81382 1.46634 0.26236 0.00000 * 1 1.47206 1.24997 1.45329 1.38535 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.00841 5.47618 5.47618 1.46634 0.26236 0.90706 0.51703 2 1.59098 1.13213 1.31990 1.57617 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.00830 5.48920 5.48920 1.46634 0.26236 0.90727 0.51688 3 1.52380 1.43249 1.01995 1.69941 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.00821 5.49969 5.49969 1.46634 0.26236 1.09861 0.40547 4 1.48389 1.21942 1.51146 1.35768 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.00996 5.50144 5.14440 1.46634 0.26236 1.09861 0.40547 5 1.36746 1.28009 1.45246 1.45569 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.00933 5.50321 5.25737 1.46634 0.26236 0.87526 0.53915 6 1.32265 1.39832 1.23116 1.63679 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.01539 5.50382 4.49156 1.46634 0.26236 1.18745 0.36384 7 1.43319 1.70463 0.98254 1.58352 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.01390 5.49764 4.63470 1.46634 0.26236 0.66204 0.72525 8 1.81808 0.94832 1.31753 1.70113 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.00821 5.49951 5.49951 1.46634 0.26236 0.53812 0.87670 9 2.11112 1.80150 0.66785 1.60427 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 10 1.82619 2.67791 0.33559 2.89411 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01712 5.50893 4.34902 1.46634 0.26236 1.09861 0.40547 11 2.51661 3.39581 0.16858 3.19695 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02669 5.12428 3.89268 1.06257 0.42398 0.72604 0.66130 12 0.22718 3.22966 2.03301 3.42003 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.01068 5.48984 5.03751 1.46634 0.26236 0.30220 1.34395 13 1.66212 1.68092 0.72391 1.97178 14 g - - < 1.38629 1.38629 1.38629 1.38629 0.00815 5.50661 5.50661 1.46634 0.26236 0.82079 0.57997 14 2.36042 3.40518 0.17733 3.35485 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 15 5.55276 0.08544 5.50432 2.60441 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03951 3.63198 4.39972 0.28222 1.40285 1.09861 0.40547 16 1.45671 2.19875 1.20498 1.03182 18 u - - - 1.38629 1.38629 1.38629 1.38629 0.01392 5.50067 4.63106 1.46634 0.26236 1.21072 0.35380 17 1.02283 1.50148 1.83772 1.35308 19 a - - - 1.38629 1.38629 1.38629 1.38629 0.00823 5.49704 5.49704 1.46634 0.26236 0.54816 0.86278 18 1.47819 1.54694 2.25841 0.78848 20 u - - - 1.38629 1.38629 1.38629 1.38629 0.01095 5.50691 4.98670 1.46634 0.26236 1.25206 0.33675 19 3.90936 3.38323 0.07157 4.19478 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.00817 5.50414 5.50414 1.46634 0.26236 1.02647 0.44359 20 0.06354 3.44485 3.89018 4.68771 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.00997 5.50616 5.14049 1.46634 0.26236 1.30356 0.31685 21 1.32516 0.93275 3.03975 1.22784 23 c - - - 1.38629 1.38629 1.38629 1.38629 0.02892 3.81990 5.02390 0.33707 1.25127 0.66355 0.72365 22 1.62194 0.90973 1.26802 2.13317 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.01389 5.21034 4.78739 1.13698 0.38682 0.80513 0.59245 23 2.95655 0.29683 2.79867 1.93837 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.00817 5.50466 5.50466 1.46634 0.26236 0.68028 0.70618 24 2.24423 1.57817 0.71595 1.61490 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 25 2.45374 0.47261 2.20592 1.71200 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04430 3.23704 5.50893 0.19483 1.73145 1.09861 0.40547 26 2.31202 2.09774 0.33071 2.81692 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03422 3.67503 4.79257 0.40922 1.09115 1.09861 0.40547 27 1.93735 1.63205 0.77210 1.61776 34 g - - < 1.38629 1.38629 1.38629 1.38629 0.01111 5.50468 4.96509 1.46634 0.26236 0.97242 0.47509 28 1.92234 1.05642 1.34758 1.40173 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.05025 3.14216 5.14689 0.38084 1.14976 0.63981 0.74949 29 2.59052 0.57749 1.45286 2.04166 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.00984 5.50719 5.16150 1.46634 0.26236 1.23230 0.34478 30 2.37435 0.62222 2.20238 1.34848 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02842 5.50551 3.73175 1.46634 0.26236 1.34601 0.30148 31 1.25294 1.51761 0.99405 2.07924 40 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02941 5.48543 3.69542 1.46634 0.26236 0.65942 0.72805 32 1.71674 0.91862 2.58421 1.06183 41 c - - _ 1.38629 1.38629 1.38629 1.38629 0.82434 0.99313 1.65518 1.94277 0.15467 1.04873 0.43137 33 0.71738 1.70722 1.62081 2.01844 91 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01018 5.28555 5.28555 1.46634 0.26236 0.04351 3.15646 34 0.85228 1.25327 2.15421 1.76031 92 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00814 5.50799 5.50799 1.46634 0.26236 1.17310 0.37021 35 1.55036 1.00958 1.98081 1.25352 93 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00814 5.50799 5.50799 1.46634 0.26236 1.17310 0.37021 36 1.10470 1.18708 1.97637 1.49161 94 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00814 5.50799 5.50799 1.46634 0.26236 0.96447 0.47995 37 3.67484 0.21276 3.26487 2.05497 95 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 38 3.88771 4.28527 0.06660 3.50096 96 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 39 5.42773 6.54553 0.02074 4.22026 97 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 40 3.19749 1.51582 1.52084 0.65204 98 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 41 5.63852 0.03046 5.91014 3.74080 99 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 42 1.12131 4.06993 0.43655 4.52729 100 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 43 4.51985 0.05491 4.19307 3.59583 101 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 44 3.78539 0.14278 4.43292 2.31792 102 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 45 1.55872 1.72086 1.18723 1.18542 103 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 46 1.48316 1.81019 0.78440 1.87689 104 g - - _ 1.38629 1.38629 1.38629 1.38629 0.48430 5.50893 0.96805 1.46634 0.26236 1.09861 0.40547 47 1.19717 1.69709 1.14818 1.62190 105 g - - _ 1.38629 1.38629 1.38629 1.38629 1.14539 0.39609 4.71523 2.30064 0.10558 0.02110 3.86883 48 2.38544 1.59847 0.50126 2.30276 152 G - - > 1.38629 1.38629 1.38629 1.38629 0.03183 3.60190 5.50739 0.27484 1.42584 0.89557 0.52488 49 1.21468 1.45000 1.15609 1.87138 154 g - - > 1.38629 1.38629 1.38629 1.38629 0.01030 5.50893 5.08338 1.46634 0.26236 1.09861 0.40547 50 1.75173 0.89669 1.44239 1.70240 155 c - - > 1.38629 1.38629 1.38629 1.38629 0.00989 5.15225 5.50678 1.08189 0.41393 0.83587 0.56827 51 3.10104 0.40043 1.97198 1.92563 157 C - - > 1.38629 1.38629 1.38629 1.38629 0.01212 5.50893 4.82895 1.46634 0.26236 1.09861 0.40547 52 1.90472 2.30722 0.41679 2.38123 158 G - - > 1.38629 1.38629 1.38629 1.38629 0.02555 3.85568 5.50498 0.48587 0.95494 0.69975 0.68658 53 1.74818 0.77047 1.49890 1.96800 161 c - - > 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 54 2.07898 2.84618 0.27216 2.89779 162 G - - > 1.38629 1.38629 1.38629 1.38629 0.01066 5.50893 5.02846 1.46634 0.26236 1.09861 0.40547 55 2.13126 1.10359 0.92395 1.87937 163 g - - > 1.38629 1.38629 1.38629 1.38629 0.01946 4.60632 4.67901 0.67851 0.70800 0.80513 0.59245 56 2.82207 1.09145 0.73438 2.07954 165 g - - - 1.38629 1.38629 1.38629 1.38629 0.01262 5.50370 4.77182 1.46634 0.26236 0.62826 0.76253 57 3.17022 4.21373 0.09893 3.28587 166 G - - - 1.38629 1.38629 1.38629 1.38629 0.01616 5.50455 4.42596 1.46634 0.26236 1.40585 0.28125 58 0.06405 4.95658 3.34525 3.92452 167 A - - - 1.38629 1.38629 1.38629 1.38629 0.01268 4.76734 5.49662 0.92207 0.50699 0.40385 1.10186 59 4.39001 5.65261 0.02084 5.35749 170 G - - > 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 60 3.80536 0.18642 3.38983 2.17059 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.01227 5.50893 4.80991 1.46634 0.26236 1.09861 0.40547 61 2.11549 0.69808 1.40665 1.98833 172 c - - > 1.38629 1.38629 1.38629 1.38629 0.01875 4.23326 5.50482 0.48958 0.94903 0.69022 0.69609 62 0.03210 4.68479 4.34128 4.67422 174 A - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 63 1.53863 1.31270 0.76773 2.95332 175 g - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 64 3.68287 3.22413 4.11580 0.08475 176 U - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 65 2.51298 4.03930 0.12477 3.98135 177 G - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 66 3.36923 4.73451 0.05528 4.54943 178 G - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 67 4.80501 0.41563 5.54815 1.11477 179 C - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 68 4.16945 6.61710 0.01954 5.97220 180 G - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 69 0.29310 1.57994 3.39682 4.22750 181 A - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 70 5.53047 6.73992 0.00752 6.05482 182 G - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 71 0.00593 6.53451 6.05381 6.16076 183 A - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 72 5.72553 0.01889 5.99310 4.34608 184 C - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 73 5.30283 0.02403 4.44149 4.96390 185 C - - - 1.38629 1.38629 1.38629 1.38629 0.00813 5.50893 5.50893 1.46634 0.26236 1.09861 0.40547 74 5.53047 6.73992 0.00752 6.05482 186 G - - - 1.38629 1.38629 1.38629 1.38629 0.00936 5.50893 5.24633 1.46634 0.26236 1.09861 0.40547 75 0.65441 2.65486 0.99728 3.19278 187 A - - - 1.38629 1.38629 1.38629 1.38629 0.01399 4.99379 4.94634 0.94489 0.49221 0.93141 0.50087 76 3.03806 0.20442 3.14727 2.36465 189 C - - > 1.38629 1.38629 1.38629 1.38629 0.00816 5.50588 5.50588 1.46634 0.26236 0.76120 0.62943 77 3.06492 0.36049 2.65280 1.68442 190 C - - > 1.38629 1.38629 1.38629 1.38629 0.01438 5.50893 4.58249 1.46634 0.26236 1.09861 0.40547 78 1.67428 0.74145 1.79886 1.76817 191 c - - > 1.38629 1.38629 1.38629 1.38629 0.01102 5.50066 4.98030 1.46634 0.26236 0.58329 0.81658 79 1.88950 1.43479 0.86714 1.65790 192 g - - > 1.38629 1.38629 1.38629 1.38629 0.05011 5.50315 3.10560 1.46634 0.26236 1.30362 0.31683 80 1.73436 0.98925 1.45438 1.52288 193 c - - > 1.38629 1.38629 1.38629 1.38629 0.08161 3.37607 3.11925 0.23251 1.57282 1.04374 0.43407 81 1.64907 1.39478 1.00946 1.63236 195 g - - > 1.38629 1.38629 1.38629 1.38629 0.02806 3.81326 5.18649 0.35648 1.20444 0.10966 2.26472 82 1.56140 1.27780 1.14344 1.64616 197 g - - > 1.38629 1.38629 1.38629 1.38629 0.00827 5.49248 5.49248 1.46634 0.26236 0.93903 0.49595 83 1.49328 1.51083 1.07339 1.54744 198 g - - > 1.38629 1.38629 1.38629 1.38629 0.01312 5.48585 4.72323 1.46634 0.26236 1.09861 0.40547 84 1.54298 1.37843 1.26606 1.37697 199 g - - > 1.38629 1.38629 1.38629 1.38629 0.01471 5.44866 4.57603 1.46634 0.26236 1.42163 0.27617 85 1.46656 1.42228 1.08619 1.65747 200 g - - > 1.38629 1.38629 1.38629 1.38629 0.02869 5.41991 3.73583 1.46634 0.26236 1.71147 0.19918 86 1.50469 1.49695 1.08852 1.52607 201 g - - > 1.38629 1.38629 1.38629 1.38629 0.00455 5.39577 * 1.46634 0.26236 0.00000 * //