INFERNAL1/a [1.1.5 | Sep 2023] NAME c-di-GMP-I-UAU ACC RF03168 DESC c-di-GMP-I-UAU riboswitch aptamer STATES 252 NODES 65 CLEN 81 W 100 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 19:43:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03168/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 3.254883 CKSUM 4016926078 NULL 0.000 0.000 0.000 0.000 GA 65.90 TC 65.90 NC 65.80 EFP7GF -7.5116 0.72387 ECMLC 0.72174 -6.43693 1.48877 1600000 365991 0.003279 ECMGC 0.45033 -13.47406 -2.73556 1600000 50378 0.007940 ECMLI 0.61943 -5.47945 3.01883 1600000 231928 0.005174 ECMGI 0.46898 -9.58320 0.51481 1600000 45582 0.008775 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 100 123 -7.409 -7.616 -0.038 -6.030 IL 1 1 2 1 4 5 36 103 126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 5 35 103 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 6 35 100 123 -8.397 -0.015 -7.051 -1.089 0.640 -1.912 0.770 D 4 2 3 5 3 2 30 98 121 -6.174 -1.687 -0.566 IL 5 5 3 5 3 5 34 102 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 6 34 99 122 -8.397 -0.015 -7.051 0.602 -0.999 -0.410 0.298 D 7 5 3 8 3 1 29 97 120 -6.174 -1.687 -0.566 IL 8 8 3 8 3 4 33 101 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 5 33 98 121 -8.397 -0.015 -7.051 0.596 0.045 -1.217 0.038 D 10 8 3 11 3 1 28 96 119 -6.174 -1.687 -0.566 IL 11 11 3 11 3 4 33 99 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 5 32 97 120 -8.397 -0.015 -7.051 -0.437 -0.440 0.334 0.337 D 13 11 3 14 3 1 28 95 118 -6.174 -1.687 -0.566 IL 14 14 3 14 3 3 32 98 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 5 31 96 119 -8.397 -0.015 -7.051 1.104 -1.826 0.211 -1.282 D 16 14 3 17 3 1 27 94 117 -6.174 -1.687 -0.566 IL 17 17 3 17 3 3 31 97 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 4 30 95 118 -8.397 -0.015 -7.051 0.627 -0.357 -1.168 0.298 D 19 17 3 20 3 0 26 93 116 -6.174 -1.687 -0.566 IL 20 20 3 20 3 3 30 96 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 4 29 94 117 -8.397 -0.015 -7.051 1.397 -0.775 -1.629 -1.123 D 22 20 3 23 3 0 26 92 115 -6.174 -1.687 -0.566 IL 23 23 3 23 3 3 29 95 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 4 28 93 116 -8.397 -0.015 -7.051 0.931 -1.170 -0.430 -0.142 D 25 23 3 26 3 0 25 91 114 -6.174 -1.687 -0.566 IL 26 26 3 26 3 2 28 94 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 3 3 27 92 115 -8.397 -0.015 -7.051 0.633 -1.134 0.086 -0.100 D 28 26 3 29 3 0 24 90 113 -6.174 -1.687 -0.566 IL 29 29 3 29 3 2 27 93 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 3 26 91 114 -8.763 -0.014 -7.080 -2.309 -2.167 -3.074 1.789 D 31 29 3 32 3 0 24 90 113 -5.620 -0.734 -1.403 IL 32 32 3 32 3 2 26 92 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 88 - g - - MR 33 32 3 35 3 2 26 90 113 -8.763 -0.014 -7.080 0.294 -0.630 0.563 -0.621 D 34 32 3 35 3 0 22 88 111 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 25 91 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 87 - a - - MR 36 35 3 38 3 2 25 89 112 -8.763 -0.014 -7.080 0.032 -0.062 0.003 0.024 D 37 35 3 38 3 0 21 87 110 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 24 90 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 86 - A - - MR 39 38 3 41 3 2 24 88 111 -8.763 -0.014 -7.080 1.132 -1.833 0.163 -1.292 D 40 38 3 41 3 0 21 86 109 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 24 89 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 85 - a - - MR 42 41 3 44 3 2 23 87 110 -8.763 -0.014 -7.080 0.978 -0.601 -0.451 -0.647 D 43 41 3 44 3 0 20 85 108 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 23 88 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 84 - C - - MR 45 44 3 47 3 2 22 86 109 -8.763 -0.014 -7.080 -1.528 1.372 -2.401 -0.190 D 46 44 3 47 3 0 19 84 107 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 22 87 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 83 - U - - MR 48 47 3 50 3 1 21 85 108 -8.763 -0.014 -7.080 -2.309 -2.167 -3.074 1.789 D 49 47 3 50 3 0 19 84 106 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 21 86 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 82 - G - - MR 51 50 3 53 2 1 20 84 107 -8.862 -0.003 0.327 -1.970 1.079 -1.405 D 52 50 3 53 2 0 19 83 106 -4.432 -0.068 IR 53 53 3 53 2 1 20 85 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 54 53 3 55 135 0 19 83 106 [ BEGL 19 ] - - - - - - S 55 54 1 56 4 0 0 40 59 -0.037 -7.085 -6.492 -7.132 [ MATP 20 ] 11 36 g c - - MP 56 55 1 60 6 2 2 40 59 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.488 -2.696 -3.471 1.410 -3.467 -4.191 1.719 -3.699 -3.611 2.659 -4.029 -0.435 0.612 -3.498 -1.024 -2.410 ML 57 55 1 60 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 35 C G - - MP 62 61 6 66 4 2 2 38 57 -7.409 -7.616 -0.038 -6.030 -5.514 -5.500 -5.031 -1.674 -3.572 -5.314 3.765 -4.479 -5.130 -1.537 -5.269 -3.479 -0.177 -5.515 -1.319 -3.944 ML 63 61 6 66 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 65 61 6 66 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 66 66 5 66 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 67 67 6 67 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 13 - A - - - ML 68 67 6 70 3 1 1 36 54 -8.397 -0.015 -7.051 1.854 -3.243 -2.792 -2.876 D 69 67 6 70 3 0 0 35 53 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - A - - - ML 71 70 3 73 3 1 1 34 53 -8.397 -0.015 -7.051 1.095 -0.133 -1.446 -0.775 D 72 70 3 73 3 0 0 33 52 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 15 - A - - - ML 74 73 3 76 3 1 1 33 52 -8.763 -0.014 -7.080 1.854 -3.243 -2.792 -2.876 D 75 73 3 76 3 0 0 32 51 -5.620 -0.734 -1.403 IL 76 76 3 76 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 34 - C - - MR 77 76 3 79 3 1 1 32 51 -8.763 -0.014 -7.080 -2.792 1.818 -3.610 -2.007 D 78 76 3 79 3 0 0 31 49 -6.390 -1.568 -0.620 IR 79 79 3 79 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 33 - a - - MR 80 79 3 82 3 1 1 31 50 -8.763 -0.014 -7.080 0.593 -0.431 -1.166 0.383 D 81 79 3 82 3 0 0 30 48 -6.390 -1.568 -0.620 IR 82 82 3 82 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 32 - G - - MR 83 82 3 85 5 1 1 30 49 -7.478 -0.030 -7.293 -7.505 -8.397 -1.236 -2.130 1.487 -0.879 D 84 82 3 85 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 85 85 3 85 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 31 c g - - MP 86 85 3 90 6 2 2 29 48 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.101 -2.667 -3.176 1.326 -2.935 -3.979 2.183 -3.294 -3.223 1.897 -3.712 0.493 0.986 -3.279 -0.630 -2.139 ML 87 85 3 90 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 3 90 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 3 90 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 30 c g - - MP 92 91 6 96 6 2 2 27 46 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.533 -3.550 -3.521 0.095 0.184 -4.197 2.681 -3.303 -3.524 0.224 -3.979 -1.630 2.103 -3.743 -0.368 -2.454 ML 93 91 6 96 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 29 c g - - MP 98 97 6 102 6 2 2 25 44 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.017 -2.978 -3.106 1.632 -2.531 -3.900 2.223 -3.068 -3.111 0.823 -3.628 -1.060 1.630 -3.266 0.699 -2.079 ML 99 97 6 102 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 19 28 g c - - MP 104 103 6 108 6 2 2 23 42 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.494 -2.607 -3.465 1.786 -3.673 -4.186 1.307 -3.788 -3.640 2.707 -4.044 -0.327 0.433 -3.475 -1.208 -2.423 ML 105 103 6 108 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 20 27 g c - - MP 110 109 6 114 6 2 2 21 40 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -2.954 -2.467 -3.013 1.400 -2.993 -3.769 1.477 -3.282 -3.142 2.332 -3.607 0.406 0.849 -3.062 0.169 -2.050 ML 111 109 6 114 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 26 g c - - MP 116 115 6 120 4 2 2 19 38 -7.409 -7.616 -0.038 -6.030 -3.334 -2.636 -3.328 1.398 -3.290 -4.055 1.459 -3.563 -3.486 2.583 -3.913 -0.421 1.183 -3.352 -0.881 -2.290 ML 117 115 6 120 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 119 115 6 120 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 120 120 5 120 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 121 121 6 121 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - G - - - ML 122 121 6 124 3 1 1 16 34 -8.397 -0.015 -7.051 -2.465 -3.801 1.863 -3.180 D 123 121 6 124 3 0 0 16 34 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - U - - - ML 125 124 3 127 3 1 1 14 33 -8.397 -0.015 -7.051 -0.211 -0.395 -1.421 1.002 D 126 124 3 127 3 0 0 15 33 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - A - - - ML 128 127 3 130 3 1 1 13 31 -8.397 -0.015 -7.051 1.153 -1.838 0.126 -1.300 D 129 127 3 130 3 0 0 13 32 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - A - - - ML 131 130 3 133 2 1 1 1 1 * 0.000 1.854 -3.243 -2.792 -2.876 D 132 130 3 133 2 0 0 0 0 * 0.000 IL 133 133 3 133 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 134 133 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 135 54 1 136 3 0 1 57 80 -8.397 -0.015 -7.051 IL 136 136 2 136 3 1 1 59 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - A - - - ML 137 136 2 139 3 1 2 57 80 -8.397 -0.015 -7.051 1.854 -3.243 -2.792 -2.876 D 138 136 2 139 3 0 0 55 78 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 58 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - A - - - ML 140 139 3 142 5 1 1 56 79 -7.478 -0.030 -7.293 -7.505 -8.397 1.854 -3.243 -2.792 -2.876 D 141 139 3 142 5 0 0 54 77 -4.959 -0.803 -4.221 -2.596 -2.508 IL 142 142 3 142 5 1 1 56 79 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 39 81 A U - - MP 143 142 3 147 6 2 2 55 78 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.622 -3.472 -4.544 3.684 -5.349 -6.521 -0.992 -4.529 -4.444 0.174 -5.030 -0.838 -1.402 -5.542 -2.928 -3.358 ML 144 142 3 147 6 1 1 53 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 3 147 6 1 1 53 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 50 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 54 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 54 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 40 80 g u - - MP 149 148 6 153 6 2 2 53 76 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -2.960 -2.004 -3.267 2.108 -3.587 -3.863 0.272 -3.408 -2.979 1.264 0.266 2.119 0.000 -3.393 -1.468 -2.179 ML 150 148 6 153 6 1 1 51 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 51 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 49 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 52 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 52 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 41 79 C G - - MP 155 154 6 159 6 2 2 51 74 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.304 -4.288 -4.201 -0.746 -3.236 -4.754 3.495 -3.964 -4.246 -0.597 0.010 -2.413 0.274 -4.488 -1.021 -3.187 ML 156 154 6 159 6 1 1 50 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 49 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 47 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 50 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 50 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 42 78 c g - - MP 161 160 6 165 4 2 2 49 71 -7.409 -7.616 -0.038 -6.030 -3.615 -3.686 -3.569 -0.135 0.551 -4.189 2.698 -3.343 -3.594 -0.043 -4.020 -1.873 0.911 -3.812 1.690 -2.545 ML 162 160 6 165 4 1 1 49 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 48 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 47 70 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 50 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - A - - - ML 167 166 6 169 5 1 1 47 69 -7.478 -0.342 -2.346 -7.505 -8.397 1.854 -3.243 -2.792 -2.876 D 168 166 6 169 5 0 0 45 68 -4.959 -0.803 -4.221 -2.596 -2.508 IL 169 169 3 169 5 1 1 47 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 44 77 C G - - MP 170 169 3 174 6 2 2 46 68 -9.145 -9.085 -0.021 -7.861 -8.141 -8.536 -4.750 -4.674 -4.406 -0.888 -3.081 -4.791 3.609 -3.911 -4.463 -0.675 -4.701 -2.624 0.412 -4.806 -0.793 -3.296 ML 171 169 3 174 6 1 1 45 68 -1.589 -7.950 -1.187 -2.358 -7.799 -5.329 -0.136 0.003 0.240 -0.142 MR 172 169 3 174 6 1 1 44 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 3 174 6 0 0 41 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 45 68 -3.273 -3.536 -0.421 -5.191 -5.967 -5.628 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 45 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 46 76 g c - - MP 176 175 6 180 6 2 2 44 66 -9.301 -9.240 -0.100 -8.017 -4.119 -8.692 -3.882 -3.021 -3.815 0.597 -3.544 -4.407 1.934 -3.900 -3.896 2.893 -4.277 -0.743 0.457 -3.846 -1.092 -2.717 ML 177 175 6 180 6 1 1 42 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 42 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 40 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 43 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 43 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 47 75 G C - - MP 182 181 6 186 4 2 2 42 64 -7.123 -8.368 -0.067 -4.822 -3.848 -2.744 -3.857 0.666 -4.286 -4.245 0.061 -4.295 -3.883 3.315 -4.243 -0.524 -0.235 -0.157 -1.851 -2.875 ML 183 181 6 186 4 1 1 41 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 41 63 -5.483 -13.910 -0.138 -3.866 1.246 -1.167 -0.908 -0.622 D 185 181 6 186 4 0 0 39 61 -12.737 -14.007 -2.036 -0.404 IL 186 186 5 186 4 1 1 41 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 41 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 74 - G - - MR 188 187 6 190 3 1 1 40 62 -8.763 -0.014 -7.080 -2.465 -3.801 1.863 -3.180 D 189 187 6 190 3 0 0 38 61 -6.390 -1.568 -0.620 IR 190 190 3 190 3 1 1 40 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 73 - A - - MR 191 190 3 193 5 1 1 39 61 -7.478 -0.030 -7.293 -7.505 -8.397 1.426 -0.857 -1.659 -1.173 D 192 190 3 193 5 0 0 37 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 193 193 3 193 5 1 1 39 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 48 72 g c - - MP 194 193 3 198 6 2 2 38 60 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.105 -2.392 -3.146 1.529 -3.488 -3.933 0.608 -0.328 -3.297 2.696 -3.744 0.614 0.353 -3.199 -1.220 -2.187 ML 195 193 3 198 6 1 1 36 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 196 193 3 198 6 1 1 36 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 197 193 3 198 6 0 0 33 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 198 198 5 198 6 1 1 37 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 199 199 6 199 5 1 1 37 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 49 71 u a - - MP 200 199 6 204 6 2 2 36 58 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.175 -3.145 -3.233 1.203 -2.591 -3.991 1.633 -3.157 -3.244 0.620 -3.740 -1.235 1.995 -3.418 1.802 -2.211 ML 201 199 6 204 6 1 1 34 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 202 199 6 204 6 1 1 34 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 203 199 6 204 6 0 0 31 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 204 204 5 204 6 1 1 35 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 205 205 6 205 5 1 1 35 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 50 70 c g - - MP 206 205 6 210 6 2 2 34 56 -9.301 -4.132 -0.102 -8.017 -8.297 -8.692 -3.991 -3.977 -3.865 -0.215 -2.771 -4.433 2.763 -3.494 -3.870 -0.047 -4.261 -1.978 1.602 -4.135 1.717 -2.741 ML 207 205 6 210 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 208 205 6 210 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 209 205 6 210 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 210 210 5 210 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 211 211 6 211 5 1 1 35 58 -1.177 -0.973 -7.011 -5.179 -6.285 0.000 0.000 0.000 0.000 [ MATP 55 ] 51 66 c g - - MP 212 211 6 216 6 2 2 30 52 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.473 -3.311 -3.496 0.454 -2.712 -4.253 2.320 -3.305 -3.479 1.396 -3.965 -1.203 2.255 -3.672 -0.352 -2.355 ML 213 211 6 216 6 1 1 29 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 214 211 6 216 6 1 1 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 215 211 6 216 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 216 216 5 216 6 1 1 30 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 217 217 6 217 5 1 1 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 52 65 c g - - MP 218 217 6 222 6 2 2 28 50 -9.301 -9.240 -0.174 -8.017 -8.297 -3.275 -3.392 -3.291 -3.429 1.185 -2.663 -4.192 2.318 -3.255 -3.411 0.680 -3.904 -1.237 2.283 -3.613 -0.331 -2.315 ML 219 217 6 222 6 1 1 27 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 220 217 6 222 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 221 217 6 222 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 222 222 5 222 6 1 1 28 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 223 223 6 223 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 53 64 c g - - MP 224 223 6 228 6 2 2 26 48 -9.148 -9.087 -0.104 -7.863 -8.143 -4.103 -3.285 -3.061 -3.303 0.642 -2.601 -4.043 2.466 -3.167 -3.311 1.623 -3.785 -0.963 1.739 -3.464 -0.256 -2.194 ML 225 223 6 228 6 1 1 25 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 226 223 6 228 6 1 1 25 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 227 223 6 228 6 0 0 23 45 -10.611 -9.310 -5.107 -5.789 -5.806 -0.100 IL 228 228 5 228 6 1 1 26 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 229 229 6 229 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 54 63 c g - - MP 230 229 6 234 4 2 2 25 46 -6.835 -2.418 -0.356 -5.456 -2.953 -3.006 -2.980 0.472 0.711 -3.676 2.365 -2.876 -3.007 0.607 -3.476 -1.215 1.901 -3.184 -0.054 -1.993 ML 231 229 6 234 4 1 1 23 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 232 229 6 234 4 1 1 23 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 233 229 6 234 4 0 0 23 45 -6.467 -2.059 -0.832 -2.419 IL 234 234 5 234 4 1 1 25 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 235 235 6 235 3 1 1 24 46 -1.221 -0.873 -5.318 0.000 0.000 0.000 0.000 [ MATL 59 ] 55 - g - - - ML 236 235 6 238 3 1 1 17 36 -8.397 -0.015 -7.051 0.278 -1.253 0.609 -0.246 D 237 235 6 238 3 0 0 17 35 -6.174 -1.687 -0.566 IL 238 238 3 238 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 56 - u - - - ML 239 238 3 241 3 1 1 16 34 -8.397 -0.015 -7.051 0.230 -0.312 -1.221 0.671 D 240 238 3 241 3 0 0 16 34 -6.174 -1.687 -0.566 IL 241 241 3 241 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 57 - a - - - ML 242 241 3 244 3 1 1 14 33 -8.397 -0.174 -3.179 0.693 -1.131 -0.011 -0.097 D 243 241 3 244 3 0 0 14 33 -6.174 -1.687 -0.566 IL 244 244 3 244 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 58 - a - - - ML 245 244 3 247 3 1 1 13 31 -8.240 -0.185 -3.094 0.430 -0.908 -0.319 0.399 D 246 244 3 247 3 0 0 12 31 -7.366 -2.879 -0.221 IL 247 247 3 247 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 59 - a - - - ML 248 247 3 250 2 1 1 1 1 * 0.000 0.603 -0.177 -1.040 0.151 D 249 247 3 250 2 0 0 0 0 * 0.000 IL 250 250 3 250 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 251 250 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c-di-GMP-I-UAU ACC RF03168 DESC c-di-GMP-I-UAU riboswitch aptamer LENG 81 MAXL 161 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 19:43:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03168/CM NSEQ 6 EFFN 4.889648 CKSUM 4016926078 STATS LOCAL MSV -8.4728 0.72387 STATS LOCAL VITERBI -9.9629 0.72387 STATS LOCAL FORWARD -3.4903 0.72387 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25162 1.50122 1.29159 1.53125 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 0.00000 * 1 2.43145 0.85987 3.03286 0.81940 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 2 0.93465 2.20521 1.68072 1.16857 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 3 0.93544 1.30946 2.38091 1.40586 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 4 1.82568 1.70450 1.07474 1.15315 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 5 0.55119 3.00741 1.18901 2.66219 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 6 0.90777 1.64487 2.32610 1.18461 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 7 0.33666 1.95058 2.81403 2.48059 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 8 0.68356 2.35067 1.70335 1.52416 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 9 0.91493 2.31478 1.28919 1.49089 9 a - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 10 3.49511 3.32066 4.03592 0.08790 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 11 1.66676 1.51815 0.74730 2.13383 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 12 4.20184 0.08901 4.07650 2.93309 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 13 0.05902 4.15506 3.80382 3.94527 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 14 0.54387 1.44019 2.65185 2.18836 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 15 0.05902 4.15506 3.80382 3.94527 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 16 1.71945 1.12991 1.09110 1.82061 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 17 2.79778 0.63912 2.59125 1.08954 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 18 1.45865 1.14502 2.05593 1.13552 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 19 1.37989 1.84792 0.72156 2.25536 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 20 1.64165 1.71939 0.83009 1.65467 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 21 1.66666 1.74174 0.79191 1.69866 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 22 3.57940 4.55256 0.05668 4.09382 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 23 1.58229 1.68953 2.54477 0.63224 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 24 0.51654 3.01619 1.25295 2.67699 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 25 0.05902 4.15506 3.80382 3.94527 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 26 1.87177 0.86945 1.61111 1.48148 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 27 2.15282 1.03558 1.38734 1.27624 27 c - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 28 2.50625 0.79878 1.73360 1.23133 28 c - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 29 1.53907 2.22875 0.86607 1.35807 29 g - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 30 0.95875 2.76430 0.74002 2.57043 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 31 2.05356 1.40620 1.04272 1.29406 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 32 2.57486 3.22242 0.27053 2.11196 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 33 0.93340 1.70925 2.32219 1.11558 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 34 3.90988 0.07191 4.42323 3.28748 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 35 3.20361 4.21527 0.07744 3.95610 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 36 2.37226 0.82278 1.42458 1.48320 36 c - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 37 0.05902 4.15506 3.80382 3.94527 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 38 0.05902 4.15506 3.80382 3.94527 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 39 0.11291 3.96929 2.71206 3.84045 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 40 1.09388 3.08936 0.56958 2.92264 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 41 3.41629 0.31015 1.99210 2.32873 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 42 3.10439 0.57228 2.93692 1.08506 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 43 0.05902 4.15506 3.80382 3.94527 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 44 2.72271 0.32175 2.33683 2.18222 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.17050 1.93402 4.40672 0.16093 1.90616 1.09861 0.40547 45 2.32144 1.34678 0.62389 2.24492 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.16469 4.40672 1.96860 1.46634 0.26236 1.09861 0.40547 46 2.38340 2.98650 0.31509 2.05904 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27038 4.27038 1.46634 0.26236 0.16097 1.90594 47 1.58139 1.95740 0.58179 2.36244 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 48 1.80350 1.71843 2.29437 0.58860 49 U - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 49 3.02577 0.77252 2.81627 0.84443 50 c - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 50 2.43108 1.08810 1.65151 0.95857 51 u - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 51 1.82191 1.09253 2.18650 0.94005 52 u - - < 1.38629 1.38629 1.38629 1.38629 0.30237 4.40672 1.39133 1.46634 0.26236 1.09861 0.40547 52 2.24941 0.94754 1.48432 1.27229 53 c - - < 1.38629 1.38629 1.38629 1.38629 0.20479 4.13681 1.77663 1.46634 0.26236 3.10893 0.04568 53 2.37650 0.73444 2.19860 1.15078 54 c - - < 1.38629 1.38629 1.38629 1.38629 0.03846 3.97048 3.97048 1.46634 0.26236 0.06456 2.77227 54 1.20495 2.42526 0.88168 1.62075 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 55 1.21611 1.61307 2.36031 0.89171 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 56 0.86772 2.31245 1.36579 1.48768 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.15243 4.40672 2.04653 1.46634 0.26236 1.09861 0.40547 57 1.06758 2.12550 1.60494 1.09099 58 a - - _ 1.38629 1.38629 1.38629 1.38629 0.17153 4.28230 1.93921 1.46634 0.26236 2.53314 0.08274 58 0.92634 1.48904 2.22039 1.30991 59 a - - _ 1.38629 1.38629 1.38629 1.38629 0.71376 1.11349 1.70492 0.43147 1.04855 0.74824 0.64093 59 0.92763 2.36532 0.92694 2.16429 63 g - - > 1.38629 1.38629 1.38629 1.38629 0.19440 4.12642 1.82929 1.46634 0.26236 0.77723 0.61559 60 1.44091 1.59002 0.85312 2.01529 64 g - - > 1.38629 1.38629 1.38629 1.38629 0.03247 4.13681 4.13681 1.46634 0.26236 0.09354 2.41578 61 1.04467 2.36179 0.99508 1.69148 65 g - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 62 1.06523 1.75420 0.99165 2.19516 66 g - - > 1.38629 1.38629 1.38629 1.38629 0.16888 1.94352 4.40672 1.12185 0.39405 1.09861 0.40547 63 1.63146 2.98576 0.36722 2.79362 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 64 1.25177 2.47089 0.80964 1.69024 71 g - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 65 2.61966 0.76724 2.33021 1.00621 72 c - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 66 0.31728 2.01732 2.83919 2.52089 73 A - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 67 3.57940 4.55256 0.05668 4.09382 74 G - - - 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 68 2.41347 0.30964 2.80891 2.14974 75 C - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 69 2.54112 0.65200 1.26812 2.12982 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.31685 4.40672 1.34953 1.46634 0.26236 1.09861 0.40547 70 2.71546 3.59445 0.13701 3.36995 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.03293 4.12281 4.12281 1.46634 0.26236 0.08988 2.45392 71 1.56844 3.09943 0.37070 2.87698 78 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 72 2.60678 3.40743 0.16074 3.18002 79 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 73 3.12429 2.18392 1.84362 0.37806 80 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 74 4.05480 3.10313 3.76845 0.08920 81 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 75 1.15361 3.08136 0.55775 2.71638 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 76 3.49511 3.32066 4.03592 0.08790 83 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 77 2.80888 0.34668 3.44567 1.60537 84 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 78 0.64077 1.81763 1.72262 2.02415 85 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 79 0.53132 3.01215 1.22503 2.67026 86 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 80 1.39962 1.38953 1.34389 1.41352 87 g - - : 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 81 1.19657 1.84134 0.90565 2.00332 88 g - - : 1.38629 1.38629 1.38629 1.38629 0.01242 4.39445 * 1.46634 0.26236 0.00000 * //