INFERNAL1/a [1.1.5 | Sep 2023] NAME c-di-GMP-I-GGC ACC RF03167 DESC c-di-GMP-I-GGC riboswitch aptamer STATES 249 NODES 65 CLEN 80 W 248 ALPH RNA RF no CONS yes MAP yes DATE Mon Aug 5 11:52:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3DNew/RF03167/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 40 EFFN 13.344727 CKSUM 2887740156 NULL 0.000 0.000 0.000 0.000 GA 59.00 TC 59.00 NC 58.90 EFP7GF -15.0714 0.71935 ECMLC 0.81134 -6.26293 1.02016 1600000 442021 0.002715 ECMGC 0.43572 -17.96520 -7.60234 1600000 36562 0.010940 ECMLI 0.66091 -6.03064 2.39066 1600000 313575 0.003827 ECMGI 0.45891 -11.93547 -2.27516 1600000 33681 0.011876 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 248 442 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 IL 1 1 2 1 6 10 41 249 444 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 10 41 249 444 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 4 185 c g - - MP 3 2 3 7 4 11 41 248 443 -9.033 -4.646 -0.069 -7.654 -0.836 -0.530 -0.591 0.692 0.644 -3.126 1.521 -0.616 -1.178 0.617 -1.724 -0.570 0.982 0.200 -0.236 -1.547 ML 4 2 3 7 4 8 39 247 442 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 4 7 38 246 441 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 6 2 3 7 4 6 37 245 440 -4.568 -4.250 -2.265 -0.520 IL 7 7 5 7 4 9 40 248 443 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 8 8 6 8 3 9 40 247 442 -1.875 -0.545 -4.575 0.000 0.000 0.000 0.000 [ MATL 2 ] 5 - a - - - ML 9 8 6 11 3 9 39 246 441 -10.286 -0.059 -4.661 0.119 0.094 -0.296 0.045 D 10 8 6 11 3 6 36 244 439 -5.620 -0.734 -1.403 IL 11 11 3 11 3 8 39 246 441 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 183 - a - - MR 12 11 3 14 3 10 38 245 440 -10.231 -0.005 -8.549 0.777 -1.245 0.097 -0.332 D 13 11 3 14 3 5 35 243 438 -7.510 -0.525 -1.740 IR 14 14 3 14 3 7 37 245 440 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 182 - a - - MR 15 14 3 17 5 9 37 244 439 -8.952 -0.011 -8.768 -8.980 -9.871 0.580 -0.056 -0.733 -0.087 D 16 14 3 17 5 4 32 242 437 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 6 36 244 439 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 181 c g - - MP 18 17 3 22 6 9 36 243 438 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -1.210 -2.311 -0.479 1.214 -0.666 -3.147 2.085 -2.644 -1.370 0.376 -2.935 -1.003 1.143 -2.436 0.782 -0.407 ML 19 17 3 22 6 5 33 241 436 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 4 32 241 435 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 2 29 238 433 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 6 34 242 437 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 6 34 242 437 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 180 g c - - MP 24 23 6 28 4 8 34 241 436 -9.033 -9.240 -0.012 -7.654 -3.283 -1.528 -3.359 1.212 -3.659 0.487 0.042 -1.732 -0.935 2.772 -4.014 -0.367 -0.138 -0.470 -1.600 -2.515 ML 25 23 6 28 4 4 32 240 435 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 3 30 239 434 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 2 29 237 432 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 5 33 241 436 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 5 33 240 435 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - a - - - ML 30 29 6 32 3 7 32 239 434 -9.968 -0.005 -8.622 0.748 -0.513 -0.199 -0.419 D 31 29 6 32 3 2 29 236 431 -6.174 -1.687 -0.566 IL 32 32 3 32 3 5 32 239 434 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - a - - - ML 33 32 3 35 3 7 31 238 433 -9.968 -0.005 -8.622 0.656 0.118 -1.348 -0.080 D 34 32 3 35 3 2 28 235 430 -6.174 -1.687 -0.566 IL 35 35 3 35 3 4 31 238 433 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 36 35 3 38 3 6 30 237 432 -9.968 -0.005 -8.622 1.436 -0.970 -1.926 -0.939 D 37 35 3 38 3 1 27 235 429 -6.174 -1.687 -0.566 IL 38 38 3 38 3 4 30 237 432 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 39 38 3 41 3 5 29 236 431 -9.968 -0.005 -8.622 1.484 -2.638 -1.171 -0.744 D 40 38 3 41 3 1 27 234 429 -6.174 -1.687 -0.566 IL 41 41 3 41 3 4 30 237 431 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - A - - - ML 42 41 3 44 3 4 28 235 430 -9.968 -0.005 -8.622 1.030 -1.144 -0.079 -0.840 D 43 41 3 44 3 1 26 233 428 -6.174 -1.687 -0.566 IL 44 44 3 44 3 3 29 236 430 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - G - - - ML 45 44 3 47 3 3 27 234 429 -10.286 -0.005 -8.603 -4.680 -6.281 1.973 -5.416 D 46 44 3 47 3 1 26 233 427 -5.620 -0.734 -1.403 IL 47 47 3 47 3 3 28 234 429 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 179 - C - - MR 48 47 3 50 3 2 26 233 428 -10.286 -0.005 -8.603 -5.270 1.966 -5.765 -4.369 D 49 47 3 50 3 0 25 231 426 -6.390 -1.568 -0.620 IR 50 50 3 50 3 2 27 233 428 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 178 - G - - MR 51 50 3 53 2 1 25 232 427 -10.563 -0.001 -0.038 -3.961 1.523 -3.530 D 52 50 3 53 2 0 25 231 426 -4.432 -0.068 IR 53 53 3 53 2 1 26 232 427 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 54 53 3 55 135 0 24 231 426 [ BEGL 16 ] - - - - - - S 55 54 1 56 4 0 0 39 58 -0.017 -8.233 -7.640 -8.280 [ MATP 17 ] 14 41 G C - - MP 56 55 1 60 6 2 2 39 58 -10.269 -10.208 -0.034 -8.985 -5.781 -9.660 -4.571 -1.472 -4.461 0.106 -1.066 -5.096 1.891 -4.770 -4.713 3.100 -5.052 -1.225 -0.390 -4.418 -2.030 -3.384 ML 57 55 1 60 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 39 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 40 C G - - MP 62 61 6 66 4 2 2 37 56 -8.999 -9.206 -0.013 -7.620 -6.640 -6.807 -6.053 -2.944 -4.455 -6.261 3.680 -5.347 -6.127 -2.855 -6.293 -4.974 0.397 -6.528 0.460 -4.920 ML 63 61 6 66 4 1 1 39 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 4 1 1 38 57 -5.388 -4.417 -0.901 -1.345 -0.054 -0.958 0.815 -0.391 D 65 61 6 66 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 66 66 5 66 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 67 67 6 67 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 68 67 6 70 3 1 1 34 53 -9.968 -0.005 -8.622 1.790 -3.545 -1.771 -2.623 D 69 67 6 70 3 0 0 34 53 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - - - ML 71 70 3 73 3 1 1 33 52 -9.968 -0.005 -8.622 1.534 -0.732 -1.593 -2.545 D 72 70 3 73 3 0 0 33 52 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - - - ML 74 73 3 76 3 1 1 32 51 -10.286 -0.005 -8.603 1.736 -1.505 -2.388 -2.983 D 75 73 3 76 3 0 0 31 50 -5.620 -0.734 -1.403 IL 76 76 3 76 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 39 - C - - MR 77 76 3 79 3 1 1 31 50 -10.286 -0.026 -5.881 -0.756 1.517 -3.535 -1.121 D 78 76 3 79 3 0 0 30 48 -6.390 -1.568 -0.620 IR 79 79 3 79 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 38 - A - - MR 80 79 3 82 3 1 1 30 49 -10.265 -0.005 -8.583 1.163 -1.264 -0.042 -1.423 D 81 79 3 82 3 0 0 29 47 -6.934 -0.875 -1.163 IR 82 82 3 82 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 37 - G - - MR 83 82 3 85 5 1 1 29 48 -8.952 -0.011 -8.768 -8.980 -9.871 -1.480 -2.369 1.651 -1.701 D 84 82 3 85 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 85 85 3 85 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 36 C G - - MP 86 85 3 90 6 2 2 28 47 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -6.191 -6.170 -5.802 -0.721 -4.331 -6.167 3.614 -5.164 -5.813 -2.009 -6.081 -4.044 0.469 -6.187 0.303 -4.586 ML 87 85 3 90 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 3 90 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 3 90 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 35 C G - - MP 92 91 6 96 6 2 2 26 45 -10.269 -6.228 -0.028 -8.985 -9.265 -9.660 -5.082 -4.891 -5.011 -0.242 -3.852 -5.712 3.221 -1.677 -4.927 -0.620 -5.381 -2.585 1.778 -5.240 -0.104 -3.696 ML 93 91 6 96 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 25 44 -2.631 -0.414 -6.142 -4.310 -5.415 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 33 c g - - MP 98 97 6 102 6 2 2 24 43 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -3.824 -3.783 -3.930 1.194 -3.285 -4.776 2.613 -3.830 -3.897 0.946 -4.438 -1.775 1.656 -4.089 0.012 -0.678 ML 99 97 6 102 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 32 g c - - MP 104 103 6 108 6 2 2 22 41 -10.269 -4.965 -0.055 -8.985 -9.265 -9.660 -3.678 -3.173 -3.726 1.009 -3.755 -4.483 1.317 -4.026 -3.879 2.601 -4.341 0.092 0.917 -3.766 0.536 -1.363 ML 105 103 6 108 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 21 40 -2.910 -0.332 -6.421 -4.589 -5.694 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 30 c g - - MP 110 109 6 114 6 2 2 20 39 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -2.933 -3.055 -3.099 0.190 0.344 -3.949 1.928 -3.272 -3.130 1.337 -3.691 -0.331 1.777 -3.247 0.627 -0.598 ML 111 109 6 114 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 29 C G - - MP 116 115 6 120 4 2 2 18 37 -9.033 -9.240 -0.012 -7.654 -4.817 -4.591 -4.798 0.011 -3.703 -5.578 3.331 -1.566 -4.694 0.540 -5.184 -2.251 0.881 -4.998 -0.545 -3.457 ML 117 115 6 120 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 119 115 6 120 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 120 120 5 120 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 121 121 6 121 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - G - - - ML 122 121 6 124 3 1 1 15 33 -9.968 -0.005 -8.622 -1.815 -2.869 1.799 -3.341 D 123 121 6 124 3 0 0 16 34 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 125 124 3 127 3 1 1 13 32 -9.968 -0.005 -8.622 1.105 -0.380 -2.292 -0.189 D 126 124 3 127 3 0 0 15 33 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 128 127 3 130 3 1 1 12 30 -9.968 -0.005 -8.622 1.433 -2.005 -0.135 -2.841 D 129 127 3 130 3 0 0 13 32 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 131 130 3 133 2 1 1 1 1 * 0.000 1.919 -4.432 -4.383 -3.013 D 132 130 3 133 2 0 0 0 0 * 0.000 IL 133 133 3 133 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 134 133 3 -1 0 0 0 0 0 [ BEGR 36 ] - - - - - - S 135 54 1 136 3 0 4 205 400 -9.968 -0.005 -8.622 IL 136 136 2 136 3 1 2 207 401 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - G - - - ML 137 136 2 139 3 1 4 205 400 -9.968 -0.005 -8.622 -2.524 -5.369 1.912 -4.723 D 138 136 2 139 3 0 0 203 397 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 2 206 401 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - A - - - ML 140 139 3 142 5 1 4 204 399 -3.246 -0.169 -8.768 -8.980 -9.871 1.586 -1.220 -1.276 -2.687 D 141 139 3 142 5 0 0 202 397 -4.959 -0.803 -4.221 -2.596 -2.508 IL 142 142 3 142 5 1 2 204 399 -1.615 -0.652 -5.555 -7.387 -6.661 0.000 0.000 0.000 0.000 [ MATP 39 ] 46 177 A U - - MP 143 142 3 147 6 2 5 203 398 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -5.851 0.894 -6.040 3.709 -8.023 -9.217 -3.505 -6.075 -5.606 -1.170 -6.271 -1.805 -3.503 -7.328 -5.351 -4.642 ML 144 142 3 147 6 1 1 201 396 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 3 147 6 1 1 200 395 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 196 391 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 202 397 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 202 397 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 47 176 g c - - MP 149 148 6 153 6 2 4 201 396 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -4.722 -0.692 -4.579 1.325 -5.729 -5.235 -0.839 -5.207 -2.035 2.993 -5.204 1.675 -1.094 -4.490 -2.836 -3.520 ML 150 148 6 153 6 1 1 199 394 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 199 393 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 195 390 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 200 395 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 200 395 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 48 175 C G - - MP 155 154 6 159 6 2 4 199 394 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -5.073 -4.870 -5.005 -0.795 -3.843 -5.714 3.404 -4.536 -4.916 -0.582 -5.373 -0.881 0.850 -5.232 0.232 -1.560 ML 156 154 6 159 6 1 1 197 392 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 197 392 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 194 389 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 198 393 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 198 393 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 49 174 c g - - MP 161 160 6 165 4 2 2 197 392 -9.033 -3.485 -0.146 -7.654 -0.835 -2.445 -1.467 0.712 0.076 -3.289 2.173 -2.760 -1.669 0.334 -3.070 -1.089 1.542 -2.579 0.915 -1.686 ML 162 160 6 165 4 1 1 196 391 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 195 390 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 194 389 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 197 392 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 196 391 -2.291 -0.388 -4.991 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - A - - - ML 167 166 6 169 5 1 1 195 390 -5.253 -0.152 -3.817 -8.980 -9.871 1.237 -1.722 -0.842 -0.356 D 168 166 6 169 5 0 0 193 388 -4.959 -0.803 -4.221 -2.596 -2.508 IL 169 169 3 169 5 1 1 195 390 -2.726 -0.384 -4.405 -6.237 -5.511 0.000 0.000 0.000 0.000 [ MATP 44 ] 52 172 c g - - MP 170 169 3 174 6 2 2 194 389 -5.928 -10.131 -0.033 -8.907 -9.187 -9.582 -3.957 -3.889 -4.044 0.599 -3.312 -0.763 2.937 -3.882 -3.998 0.575 -4.531 -1.818 1.450 -4.211 0.110 -2.902 ML 171 169 3 174 6 1 1 193 388 -0.703 -7.952 -2.666 -2.361 -7.802 -5.331 0.287 -0.191 -0.044 -0.098 MR 172 169 3 174 6 1 1 192 387 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 3 174 6 0 0 188 383 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 193 388 -3.887 -4.150 -0.261 -5.805 -6.581 -6.241 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 193 388 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 54 171 G C - - MP 176 175 6 180 6 2 2 192 387 -10.269 -10.208 -0.009 -8.985 -9.265 -9.660 -4.090 -1.669 -4.020 1.080 -4.716 -4.681 0.941 -4.597 -1.735 3.096 -4.689 -0.376 0.169 -1.786 -2.202 -3.055 ML 177 175 6 180 6 1 1 190 385 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 190 385 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 187 382 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 191 386 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 191 386 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 55 170 G C - - MP 182 181 6 186 4 2 2 190 385 -8.856 -10.102 -0.020 -6.555 -4.508 -3.182 -4.345 0.825 -5.415 -4.945 -0.555 -0.993 -4.752 3.393 -1.965 -0.330 -0.818 -1.486 -2.549 -3.316 ML 183 181 6 186 4 1 1 188 383 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 189 384 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 186 381 -12.737 -14.007 -2.036 -0.404 IL 186 186 5 186 4 1 1 189 384 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 189 384 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 169 - G - - MR 188 187 6 190 3 1 1 188 383 -10.286 -0.005 -8.603 -1.019 -4.400 1.762 -3.901 D 189 187 6 190 3 0 0 186 380 -6.390 -1.568 -0.620 IR 190 190 3 190 3 1 1 188 383 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 168 - A - - MR 191 190 3 193 5 1 1 187 382 -8.952 -0.045 -8.768 -8.980 -5.340 1.018 -0.515 -0.931 -0.413 D 192 190 3 193 5 0 0 185 379 -5.352 -0.707 -2.978 -4.409 -2.404 IR 193 193 3 193 5 1 1 187 382 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 56 167 g c - - MP 194 193 3 198 6 2 2 186 381 -10.243 -10.182 -0.010 -8.959 -9.238 -9.633 -3.515 -1.392 -3.856 1.412 -4.383 -3.876 -0.126 -4.091 -1.778 2.467 -0.753 1.902 -0.175 -3.596 -1.977 -1.582 ML 195 193 3 198 6 1 1 184 378 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 196 193 3 198 6 1 1 183 378 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 197 193 3 198 6 0 0 177 372 -9.800 -8.498 -4.295 -4.978 -4.995 -0.181 IL 198 198 5 198 6 1 1 185 380 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 199 199 6 199 5 1 1 185 380 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 57 166 u a - - MP 200 199 6 204 6 2 2 184 379 -10.243 -5.602 -0.039 -8.959 -9.238 -9.633 -4.876 -4.685 -4.840 -0.639 -1.787 -5.583 2.375 -4.413 -4.752 0.194 -5.227 -2.386 2.845 -5.053 0.000 -3.531 ML 201 199 6 204 6 1 1 181 376 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 202 199 6 204 6 1 1 180 375 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 203 199 6 204 6 0 0 176 371 -9.800 -8.498 -4.295 -4.978 -4.995 -0.181 IL 204 204 5 204 6 1 1 183 378 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 205 205 6 205 5 1 1 183 378 -2.740 -0.380 -6.251 -4.419 -5.525 0.000 0.000 0.000 0.000 [ MATP 51 ] 58 164 C G - - MP 206 205 6 210 4 2 2 182 377 -1.284 -4.187 -2.326 -1.578 -5.221 -5.154 -5.107 -1.258 -3.970 -5.713 3.350 -1.584 -5.079 -1.092 -1.644 -3.029 0.883 -5.369 1.005 -3.911 ML 207 205 6 210 4 1 1 179 374 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 208 205 6 210 4 1 1 178 373 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 209 205 6 210 4 0 0 176 371 -5.281 -4.962 -2.978 -0.295 IL 210 210 5 210 4 1 1 184 379 -0.491 -1.983 -4.865 -9.663 0.000 0.000 0.000 0.000 IR 211 211 6 211 3 1 1 180 375 -0.698 -1.643 -3.979 0.000 0.000 0.000 0.000 [ MATL 52 ] 63 - u - - - ML 212 211 6 214 3 1 1 178 373 -9.196 -0.063 -4.606 0.039 -0.556 -0.050 0.407 D 213 211 6 214 3 0 0 175 370 -10.207 -5.720 -0.029 IL 214 214 3 214 3 1 1 178 373 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 64 - c - - - ML 215 214 3 217 3 1 1 177 372 -9.142 -0.067 -4.511 -0.650 0.511 -0.942 0.503 D 216 214 3 217 3 0 0 175 369 -10.275 -2.952 -0.201 IL 217 217 3 217 3 1 1 178 372 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 65 - c - - - ML 218 217 3 220 3 1 1 176 371 -0.522 -1.740 -7.869 0.169 0.286 -0.354 -0.194 D 219 217 3 220 3 0 0 174 369 -10.181 -0.063 -4.573 IL 220 220 3 220 3 1 1 175 370 -3.716 -0.191 -4.387 0.000 0.000 0.000 0.000 [ MATL 55 ] 67 - u - - - ML 221 220 3 223 3 1 1 174 369 -9.941 -0.033 -5.520 -0.088 -0.137 -0.883 0.685 D 222 220 3 223 3 0 0 170 365 -6.936 -2.449 -0.306 IL 223 223 3 223 3 1 1 175 370 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 68 - u - - - ML 224 223 3 226 3 1 1 174 368 -9.913 -0.044 -5.109 -0.118 0.091 -0.689 0.479 D 225 223 3 226 3 0 0 169 364 -7.434 -2.947 -0.210 IL 226 226 3 226 3 1 1 174 369 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 69 - a - - - ML 227 226 3 229 3 1 1 173 368 -9.874 -0.005 -8.528 0.634 -1.110 -0.763 0.481 D 228 226 3 229 3 0 0 169 364 -7.911 -3.424 -0.148 IL 229 229 3 229 3 1 1 173 368 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 70 - a - - - ML 230 229 3 232 3 1 1 172 367 -9.874 -0.117 -3.699 0.662 -0.580 -1.466 0.472 D 231 229 3 232 3 0 0 168 363 -7.911 -1.729 -0.527 IL 232 232 3 232 3 1 1 172 367 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 71 - a - - - ML 233 232 3 235 3 1 1 171 366 -9.794 -0.197 -2.980 0.367 -0.346 -0.123 0.008 D 234 232 3 235 3 0 0 167 362 -8.558 -4.071 -0.093 IL 235 235 3 235 3 1 1 172 367 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 72 - a - - - ML 236 235 3 238 3 1 1 170 365 -9.603 -0.361 -2.183 0.135 -0.180 -0.076 0.098 D 237 235 3 238 3 0 0 167 362 -9.390 -4.903 -0.051 IL 238 238 3 238 3 1 1 171 366 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 73 - a - - - ML 239 238 3 241 3 1 1 170 365 -0.548 -2.353 -3.055 0.631 -0.810 -0.239 0.047 D 240 238 3 241 3 0 0 167 362 -0.819 -2.644 -1.871 IL 241 241 3 241 3 1 1 173 368 -0.136 -4.156 -4.874 0.000 0.000 0.000 0.000 [ MATL 62 ] 158 - g - - - ML 242 241 3 244 3 1 1 9 16 -0.458 -2.253 -4.009 -0.251 -0.536 0.517 0.056 D 243 241 3 244 3 0 0 7 14 -4.348 -3.944 -0.175 IL 244 244 3 244 3 1 1 8 15 -3.776 -0.127 -6.476 0.000 0.000 0.000 0.000 [ MATL 63 ] 160 - a - - - ML 245 244 3 247 2 1 1 1 1 * 0.000 0.434 0.226 -0.435 -0.434 D 246 244 3 247 2 0 0 0 0 * 0.000 IL 247 247 3 247 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 248 247 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c-di-GMP-I-GGC ACC RF03167 DESC c-di-GMP-I-GGC riboswitch aptamer LENG 80 MAXL 366 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Aug 5 11:52:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 40 EFFN 40.000000 CKSUM 2887740156 STATS LOCAL MSV -8.6957 0.71935 STATS LOCAL VITERBI -9.3769 0.71935 STATS LOCAL FORWARD -3.8240 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32251 1.37048 1.19374 1.73464 1.38629 1.38629 1.38629 1.38629 0.12061 2.27233 4.55132 1.12668 0.39172 0.00000 * 1 1.52736 0.97051 1.84929 1.39978 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 2 1.34002 1.24149 1.56053 1.43054 5 c - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 3 1.46198 0.98586 2.38752 1.19321 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 4 1.85227 1.72915 0.55057 2.41844 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 5 0.79657 1.75723 1.48499 1.89643 8 a - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 6 0.86744 1.23278 2.60479 1.53910 9 a - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 7 0.32010 2.10891 3.08594 2.23618 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 8 0.29169 4.35875 2.28543 1.97704 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 9 0.59051 2.34047 1.38974 2.29728 12 A - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 10 5.60980 6.82312 0.00694 6.13496 13 G - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 11 3.22567 1.13414 0.47550 4.07470 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02915 6.04501 3.63602 1.46634 0.26236 1.09861 0.40547 12 5.65771 0.17442 5.58345 1.87860 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.00487 6.02073 6.02073 1.46634 0.26236 0.16536 1.88119 13 0.11290 4.79847 2.68822 3.48961 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 14 0.28175 1.83029 2.62230 4.37939 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 15 0.14699 2.42265 3.32034 4.43358 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 16 3.45529 0.19610 5.38425 1.95262 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 17 3.38886 0.37213 4.32054 1.33297 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 18 1.88495 0.83792 2.12698 1.21618 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 19 2.15700 1.91741 0.70186 1.42015 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 20 3.40823 1.02342 1.50987 0.95037 23 u - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 21 3.07702 0.27106 2.51833 2.20060 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 22 2.86898 3.56678 0.09899 4.68358 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 23 0.53188 1.64657 4.07245 1.59574 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 24 0.35410 2.95560 1.43629 4.78702 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 25 0.03642 5.63793 5.61079 3.55621 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 26 2.53500 2.57508 0.26348 2.57420 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 27 1.06560 1.76050 1.03396 2.05633 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.05128 3.04455 6.04501 0.09672 2.38392 1.09861 0.40547 28 2.22048 0.84662 1.36245 1.57722 32 c - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 29 1.63965 2.18322 0.71478 1.58976 33 g - - > 1.38629 1.38629 1.38629 1.38629 0.02327 3.88114 6.04501 0.21578 1.63945 1.09861 0.40547 30 1.55328 4.49875 0.33069 2.83195 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 31 2.69600 5.55087 0.10972 3.42479 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 32 2.69899 3.28011 0.18684 2.72529 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.02059 6.04501 4.01664 1.46634 0.26236 1.09861 0.40547 33 0.50457 2.40898 1.36259 2.98910 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.00483 6.02924 6.02924 1.46634 0.26236 0.23357 1.56879 34 1.89554 0.27309 4.86999 2.51247 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 35 2.64424 5.38513 0.08564 5.04628 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 36 2.90069 0.43992 1.26156 4.03345 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 37 3.20487 6.44870 0.04599 5.87918 42 G - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 38 0.24418 2.23120 2.32515 4.46654 43 A - - , 1.38629 1.38629 1.38629 1.38629 0.12873 2.13351 6.04501 0.53730 0.87785 1.09861 0.40547 39 0.02496 5.87031 4.03704 5.47669 46 A - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 40 1.63320 4.52013 0.24764 4.32996 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 41 4.88411 0.24276 3.19569 1.78954 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 42 2.02428 0.79689 2.65901 1.05796 49 c - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 43 0.44183 3.04106 2.03165 1.72465 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03225 3.52788 6.04501 0.15424 1.94540 1.09861 0.40547 44 2.31204 0.52884 2.34892 1.53163 52 C - - < 1.38629 1.38629 1.38629 1.38629 0.10906 2.29305 6.04501 0.04630 3.09567 1.09861 0.40547 45 1.99681 2.05648 0.43896 2.39007 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 46 2.51161 2.75887 0.21793 2.96966 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.03137 6.04501 3.55753 1.46634 0.26236 1.09861 0.40547 47 1.65579 3.74851 0.32382 2.77858 56 G - - < 1.38629 1.38629 1.38629 1.38629 0.00488 6.01852 6.01852 1.46634 0.26236 2.64126 0.07394 48 4.25372 1.06311 2.94615 0.53125 57 U - - < 1.38629 1.38629 1.38629 1.38629 0.00488 6.01852 6.01852 1.46634 0.26236 2.64126 0.07394 49 5.31971 0.29909 3.54329 1.49301 58 C - - < 1.38629 1.38629 1.38629 1.38629 1.73201 0.81984 0.96084 1.26132 0.33307 2.64126 0.07394 50 1.44338 1.85059 1.33240 1.07036 63 u - - _ 1.38629 1.38629 1.38629 1.38629 0.13369 5.54026 2.11019 1.46634 0.26236 5.13730 0.00589 51 2.23135 0.89121 2.13289 1.01071 64 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05499 5.41550 3.01470 1.46634 0.26236 2.08249 0.13310 52 1.29843 1.04137 1.60634 1.75189 65 c - - _ 1.38629 1.38629 1.38629 1.38629 1.44916 0.27306 5.47552 0.01097 4.51808 0.01080 4.53381 53 1.52903 1.45635 2.10131 0.84893 67 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04681 6.04501 3.13814 1.46634 0.26236 1.09861 0.40547 54 1.56476 1.25907 1.91016 1.02475 68 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03373 6.00315 3.48363 1.46634 0.26236 3.01059 0.05052 55 0.88298 2.42289 2.00858 1.01168 69 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00510 5.97452 5.97452 1.46634 0.26236 3.45701 0.03203 56 0.85845 1.85761 2.80493 1.02269 70 a - - _ 1.38629 1.38629 1.38629 1.38629 0.09188 5.97452 2.46223 1.46634 0.26236 1.17802 0.36801 57 1.11356 1.61656 1.41382 1.47047 71 a - - _ 1.38629 1.38629 1.38629 1.38629 0.15141 5.91220 1.98196 1.46634 0.26236 4.01603 0.01819 58 1.33419 1.46520 1.36550 1.38492 72 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07798 5.76707 2.63268 1.46634 0.26236 0.65671 0.73096 59 0.86904 2.11516 1.51578 1.42547 73 a - - _ 1.38629 1.38629 1.38629 1.38629 0.90556 0.68863 2.37063 2.94258 0.05417 0.65424 0.73363 60 1.76748 1.78742 0.87931 1.39928 158 g - - _ 1.38629 1.38629 1.38629 1.38629 1.70276 0.62617 1.26166 0.01045 4.56617 1.70314 0.20103 61 1.05153 1.07866 1.69206 2.06825 160 a - - _ 1.38629 1.38629 1.38629 1.38629 1.25956 0.33899 5.59163 0.95145 0.48805 0.08675 2.48783 62 2.42888 5.34026 0.13051 3.52600 164 G - - > 1.38629 1.38629 1.38629 1.38629 0.03428 3.46518 6.01852 0.14897 1.97754 2.64126 0.07394 63 0.60076 3.00603 0.95689 4.01553 166 A - - > 1.38629 1.38629 1.38629 1.38629 0.00488 6.01852 6.01852 1.46634 0.26236 2.64126 0.07394 64 2.85454 0.99662 2.53208 0.70563 167 u - - > 1.38629 1.38629 1.38629 1.38629 0.00488 6.01852 6.01852 1.46634 0.26236 0.15378 1.94811 65 0.59395 1.75383 2.13892 1.85171 168 A - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 66 2.08056 5.80211 0.14205 5.39522 169 G - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 67 4.05208 0.24859 3.11657 1.84260 170 C - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 68 2.45077 0.46115 2.01937 1.89395 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.08551 6.04501 2.53095 1.46634 0.26236 1.09861 0.40547 69 1.86879 2.08643 0.46069 2.40009 172 G - - > 1.38629 1.38629 1.38629 1.38629 0.11244 2.26551 5.96465 0.04878 3.04482 0.05785 2.87876 70 1.06617 3.06788 0.64729 2.45698 174 G - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 71 2.62992 4.84893 0.15465 2.75889 175 G - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 72 3.52935 0.58690 4.33121 0.91260 176 C - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 73 5.70504 2.01673 5.70025 0.15055 177 U - - > 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 74 1.38598 5.41195 0.30176 5.12543 178 G - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 75 6.13484 0.00790 6.45074 5.49028 179 C - - , 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 76 2.75201 0.34056 3.53995 1.63061 180 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 77 1.52099 2.79805 0.67864 1.54521 181 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 78 0.92968 1.36645 1.96660 1.55885 182 a - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 79 0.77286 2.51124 1.24944 1.76916 183 a - - - 1.38629 1.38629 1.38629 1.38629 0.00475 6.04501 6.04501 1.46634 0.26236 1.09861 0.40547 80 1.17344 1.44821 1.24181 1.79067 185 a - - ) 1.38629 1.38629 1.38629 1.38629 0.19711 1.72094 * 0.10592 2.29754 0.00000 * //