INFERNAL1/a [1.1.5 | Sep 2023] NAME c4-a1b1 ACC RF03163 DESC a1, b1 targets of C4 antisense RNA STATES 168 NODES 48 CLEN 53 W 65 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 21:05:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03163/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 77 EFFN 77.000000 CKSUM 2594508007 NULL 0.000 0.000 0.000 0.000 GA 46.70 TC 46.70 NC 46.60 EFP7GF -17.4114 0.72533 ECMLC 0.64530 -8.67024 0.89427 1600000 574965 0.002087 ECMGC 0.40538 -22.06886 -8.58690 1600000 94539 0.004231 ECMLI 0.69551 -6.60082 1.89798 1600000 442907 0.002709 ECMGI 0.42370 -19.60675 -6.99504 1600000 83705 0.004779 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 65 83 -11.428 -11.635 -0.002 -10.049 IL 1 1 2 1 4 3 25 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 25 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 5 28 65 83 -12.342 -0.001 -10.996 -1.309 1.486 -2.471 -0.699 D 4 2 3 5 3 1 20 65 84 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 24 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 5 27 64 82 -12.342 -0.001 -10.996 -1.520 -2.213 -5.893 1.773 D 7 5 3 8 3 1 20 64 83 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 24 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 5 26 63 81 -12.342 -0.001 -10.996 1.810 -1.970 -3.055 -3.093 D 10 8 3 11 3 1 19 63 82 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 23 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 4 25 62 80 -12.342 -0.001 -10.996 -1.133 -1.045 0.771 0.437 D 13 11 3 14 3 1 19 62 81 -6.174 -1.687 -0.566 IL 14 14 3 14 3 2 23 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 4 24 61 79 -12.342 -0.001 -10.996 0.185 -0.445 -1.008 0.706 D 16 14 3 17 3 1 18 61 80 -6.174 -1.687 -0.566 IL 17 17 3 17 3 2 22 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 4 23 60 78 -12.342 -0.001 -10.996 -4.680 1.257 -0.002 -0.806 D 19 17 3 20 3 0 18 60 79 -6.174 -1.687 -0.566 IL 20 20 3 20 3 2 21 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 4 22 59 77 -12.342 -0.001 -10.996 -5.196 -1.973 -3.289 1.854 D 22 20 3 23 3 0 17 59 78 -6.174 -1.687 -0.566 IL 23 23 3 23 3 2 21 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 3 21 58 76 -12.342 -0.001 -10.996 -1.959 0.974 -0.586 0.154 D 25 23 3 26 3 0 17 58 77 -6.174 -1.687 -0.566 IL 26 26 3 26 3 2 20 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 3 20 57 75 -12.342 -0.001 -10.996 -0.686 0.418 0.404 -0.476 D 28 26 3 29 3 0 16 57 76 -6.174 -1.687 -0.566 IL 29 29 3 29 3 2 19 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 3 19 55 74 -12.342 -0.001 -10.996 -1.274 -0.216 1.087 -0.734 D 31 29 3 32 3 0 16 56 75 -6.174 -1.687 -0.566 IL 32 32 3 32 3 2 19 60 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 3 18 54 73 -12.342 -0.001 -10.996 -0.940 1.217 -1.214 -0.469 D 34 32 3 35 3 0 15 55 73 -6.174 -1.687 -0.566 IL 35 35 3 35 3 2 18 59 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 3 17 53 72 -12.342 -0.001 -10.996 -1.760 1.264 -0.255 -1.106 D 37 35 3 38 3 0 14 54 72 -6.174 -1.687 -0.566 IL 38 38 3 38 3 2 17 58 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 2 16 52 71 -12.640 -0.001 -10.958 -1.691 0.779 0.337 -0.491 D 40 38 3 41 3 0 14 51 70 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 16 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 56 - u - - MR 42 41 3 44 3 2 15 51 70 -12.640 -0.001 -10.958 0.379 -0.801 -0.377 0.439 D 43 41 3 44 3 0 13 50 68 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - u - - MR 45 44 3 47 3 2 14 50 69 -12.640 -0.001 -10.958 -0.515 -0.432 -0.461 0.874 D 46 44 3 47 3 0 12 49 67 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - a - - MR 48 47 3 50 3 2 13 49 68 -12.640 -0.001 -10.958 0.782 -0.849 -0.208 -0.218 D 49 47 3 50 3 0 12 48 67 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - a - - MR 51 50 3 53 2 1 12 48 67 -12.987 -0.000 0.400 -0.830 0.202 -0.047 D 52 50 3 53 2 0 11 48 66 -4.432 -0.068 IR 53 53 3 53 2 1 12 50 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 54 53 3 55 117 0 11 47 66 [ BEGL 19 ] - - - - - - S 55 54 1 56 4 0 1 31 49 -0.004 -10.390 -9.798 -10.438 [ MATP 20 ] 14 34 G C - - MP 56 55 1 60 6 2 3 31 49 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -6.445 -5.061 -6.270 0.058 -7.399 -1.827 -2.462 -6.956 -2.348 3.136 -6.919 2.143 -1.605 -0.704 -4.472 -5.234 ML 57 55 1 60 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 33 U A - - MP 62 61 6 66 6 2 3 29 47 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.249 -9.525 -8.572 -5.756 -6.924 -8.719 1.973 -7.839 -8.674 -5.724 -8.796 -7.914 3.300 -9.086 1.104 -7.475 ML 63 61 6 66 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 32 C G - - MP 68 67 6 72 6 2 3 27 45 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -7.296 -7.048 -7.202 0.080 -5.970 -7.904 3.565 -6.676 -7.098 0.396 -7.548 -4.663 0.456 -7.437 -1.774 -5.829 ML 69 67 6 72 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 31 G C - - MP 74 73 6 78 6 2 3 25 43 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -6.381 -2.200 -6.203 0.311 -7.332 -6.791 0.865 -6.889 -6.628 3.499 -6.876 -0.375 -2.664 -6.055 -1.428 -5.167 ML 75 73 6 78 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 30 C G - - MP 80 79 6 84 6 2 3 23 41 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.253 -9.531 -8.574 -5.763 -6.926 -8.720 3.672 -7.840 -8.676 -5.733 -8.798 -7.925 1.370 -9.089 -0.755 -7.478 ML 81 79 6 84 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 29 U A - - MP 86 85 6 90 6 2 2 21 39 -12.299 -12.238 -0.027 -11.015 -11.294 -5.848 -7.740 -7.337 -7.611 1.199 -6.449 -8.331 0.594 -7.108 -7.503 1.090 -7.932 -4.907 3.308 -7.946 -3.990 -6.273 ML 87 85 6 90 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 28 G C - - MP 92 91 6 96 4 2 2 18 37 -11.402 -11.609 -0.002 -10.023 -9.874 -6.838 -11.240 -0.711 -11.657 -8.117 -6.116 -11.045 -8.182 3.914 -8.415 -1.925 -6.433 -8.536 -8.492 -10.010 ML 93 91 6 96 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 20 38 -6.362 -6.043 -0.374 -2.313 IL 96 96 5 96 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - C - - - ML 98 97 6 100 3 1 1 15 34 -12.342 -0.001 -10.996 -1.799 1.633 -3.686 -0.904 D 99 97 6 100 3 0 0 18 36 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - a - - - ML 101 100 3 103 3 1 1 14 33 -12.342 -0.001 -10.996 0.971 0.512 -1.960 -1.483 D 102 100 3 103 3 0 0 17 35 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - A - - - ML 104 103 3 106 3 1 1 13 31 -12.342 -0.031 -5.572 1.546 -1.185 -2.179 -1.254 D 105 103 3 106 3 0 0 15 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - A - - - ML 107 106 3 109 3 1 1 11 30 -12.312 -0.261 -2.599 1.769 -3.473 -2.031 -1.958 D 108 106 3 109 3 0 0 13 31 -8.481 -0.216 -2.873 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - A - - - ML 110 109 3 112 3 1 1 9 17 -4.151 -0.084 -10.743 1.282 -2.001 -4.812 0.359 D 111 109 3 112 3 0 0 5 14 -11.174 -0.031 -5.565 IL 112 112 3 112 3 1 1 9 17 -3.151 -0.201 -5.851 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - U - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 -5.187 -1.389 -3.180 1.799 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 117 54 1 118 5 0 0 26 45 -4.150 -0.085 -11.101 -11.313 -12.204 IL 118 118 2 118 5 1 1 27 46 -4.359 -0.113 -6.038 -7.870 -7.144 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 52 C G - - MP 119 118 2 123 6 2 2 26 45 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.081 -9.077 -8.506 -1.190 -6.951 -8.750 3.842 -7.816 -8.562 -0.581 -8.738 -7.065 -1.087 -9.030 -4.640 -7.373 ML 120 118 2 123 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 2 123 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 2 123 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 37 51 G C - - MP 125 124 6 129 6 2 2 24 43 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.069 -6.838 -9.573 0.451 -11.045 -8.599 -5.941 -9.616 -8.112 3.621 -8.479 1.178 -6.127 -8.758 -8.093 -8.240 ML 126 124 6 129 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 38 50 G C - - MP 131 130 6 135 6 2 2 22 41 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -10.156 -6.862 -12.164 -4.305 -11.825 -8.050 -6.160 -11.748 -8.225 3.960 -8.427 -1.578 -6.514 -8.507 -8.594 -11.113 ML 132 130 6 135 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 39 49 G C - - MP 137 136 6 141 4 2 2 20 39 -11.428 -3.534 -0.132 -10.049 -6.416 -5.123 -6.246 0.186 -6.972 -6.853 1.487 -6.792 -6.629 3.374 -6.900 -2.760 0.104 -2.649 -2.447 -5.179 ML 138 136 6 141 4 1 1 22 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 141 141 5 141 4 1 1 23 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 19 38 -3.803 -0.124 -6.503 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 143 142 6 145 3 1 1 18 36 -12.342 -0.001 -10.996 -0.696 -0.543 -5.540 1.420 D 144 142 6 145 3 0 0 20 38 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - U - - - ML 146 145 3 148 3 1 1 17 35 -12.342 -0.001 -10.996 -5.152 -1.943 -0.320 1.541 D 147 145 3 148 3 0 0 19 37 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 149 148 3 151 3 1 1 16 34 -12.342 -0.001 -10.996 -8.800 -7.849 -9.925 1.997 D 150 148 3 151 3 0 0 18 36 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 152 151 3 154 3 1 1 14 33 -12.342 -0.001 -10.996 -0.352 -3.086 1.618 -5.126 D 153 151 3 154 3 0 0 17 35 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 155 154 3 157 3 1 1 13 32 -12.342 -0.001 -10.996 0.533 -2.993 1.197 -2.889 D 156 154 3 157 3 0 0 16 34 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - C - - - ML 158 157 3 160 3 1 1 12 30 -12.342 -0.001 -10.996 -1.120 1.293 -1.182 -0.624 D 159 157 3 160 3 0 0 15 33 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 161 160 3 163 3 1 1 10 28 -12.342 -0.001 -10.996 1.530 -3.350 0.001 -6.263 D 162 160 3 163 3 0 0 13 32 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 0.246 -2.999 1.140 -1.044 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c4-a1b1 ACC RF03163 DESC a1, b1 targets of C4 antisense RNA LENG 53 MAXL 107 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 21:05:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03163/CM NSEQ 77 EFFN 77.000000 CKSUM 2594508007 STATS LOCAL MSV -7.5511 0.72533 STATS LOCAL VITERBI -8.1506 0.72533 STATS LOCAL FORWARD -3.8658 0.72533 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65215 1.23033 1.27152 1.44494 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 0.00000 * 1 2.29357 0.35659 3.09910 1.87114 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 2 2.43972 2.91992 5.47122 0.15704 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 3 0.13146 2.75175 3.50408 3.53034 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 4 2.17172 2.11081 0.85206 1.08369 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 5 1.25775 1.69445 2.08532 0.89713 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 6 4.63012 0.51477 1.38765 1.94526 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 7 4.98793 2.75375 3.66634 0.10101 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 8 2.74394 0.71128 1.79235 1.27978 8 c - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 9 1.86184 1.09644 1.10602 1.71657 9 c - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 10 2.26960 1.53600 0.63281 1.89507 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 11 2.03751 0.54261 2.22784 1.71114 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 12 2.60641 0.50997 1.56296 2.15268 12 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 13 2.55856 0.84649 1.15284 1.72637 13 c - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 14 2.67896 3.50795 0.17690 2.75609 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 15 6.31543 1.40114 6.24604 0.28776 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 16 2.69359 0.29959 2.45787 2.24787 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 17 2.37500 2.15912 0.28033 3.32353 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 18 6.28057 0.22687 6.22640 1.61383 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 19 1.93278 2.34522 1.99666 0.47218 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02090 6.67456 3.94159 1.46634 0.26236 1.09861 0.40547 20 3.23996 6.56423 0.04294 6.53396 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.00258 6.65624 6.65624 1.46634 0.26236 0.12226 2.16209 21 2.63348 0.25473 3.94158 2.01269 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 22 0.71349 1.03168 2.74504 2.41445 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 23 0.31465 2.20798 2.89691 2.25529 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 6.67456 3.82981 1.46634 0.26236 1.09861 0.40547 24 0.16020 3.79354 2.79432 2.74333 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.18202 6.65390 1.80104 1.46634 0.26236 0.11002 2.26162 25 0.49769 2.77348 4.72138 1.13718 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06058 2.85977 6.49963 0.05171 2.98786 0.01549 4.17520 26 4.98141 2.34941 3.59034 0.13912 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02090 6.67456 3.94159 1.46634 0.26236 1.09861 0.40547 27 6.55997 0.05969 6.47025 2.90078 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.00258 6.65624 6.65624 1.46634 0.26236 0.12226 2.16209 28 0.47792 2.01061 2.31264 1.91718 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 29 1.81713 6.35281 0.18221 6.05913 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 30 4.42448 0.32671 1.97642 2.05444 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 31 2.43235 2.48368 0.27673 2.65253 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 32 0.48452 6.35342 0.96776 6.06068 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 33 3.37431 0.49939 4.15298 1.06961 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.06038 2.85895 6.67456 0.04348 3.15709 1.09861 0.40547 34 3.56866 0.10952 3.15111 3.41910 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 35 2.44813 6.48876 0.09406 6.32048 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 36 5.48638 6.59318 0.00689 6.60126 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 37 2.59354 1.73259 0.41874 2.40192 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 38 1.86843 1.76301 5.22630 0.40237 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 39 4.95765 2.73296 1.60818 0.31788 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 40 7.48633 6.82688 8.26572 0.00190 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 41 1.63042 3.52532 0.26455 4.93934 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 42 1.01686 3.46114 0.55664 3.38890 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 43 2.16246 0.49000 2.20583 1.81908 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 44 0.32576 3.70860 1.38526 5.72769 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 45 1.21593 3.46529 0.59586 2.11024 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.09196 2.44653 6.67456 0.02891 3.55795 1.09861 0.40547 46 2.66920 0.41579 1.67105 2.49103 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 47 6.66550 0.02747 6.54256 3.71397 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 48 6.47878 0.26189 6.38553 1.48199 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 49 3.49343 3.16384 0.10683 3.55206 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 50 1.10879 1.96184 1.24661 1.41897 53 a - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 51 0.84419 1.97500 1.53035 1.53771 54 a - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 52 1.74336 1.68590 1.70604 0.78043 55 u - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 53 1.12378 1.94156 1.64773 1.08180 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.00127 6.67330 * 1.46634 0.26236 0.00000 * //