INFERNAL1/a [1.1.5 | Sep 2023] NAME S15-Flavobacteria ACC RF03161 DESC S15-Flavobacteria ribosomal protein leader STATES 202 NODES 62 CLEN 66 W 96 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 00:19:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03161/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 935 EFFN 5.567684 CKSUM 3963323426 NULL 0.000 0.000 0.000 0.000 GA 46.50 TC 46.70 NC 46.40 EFP7GF -12.9860 0.71881 ECMLC 0.46648 -10.79764 2.97745 1600000 741061 0.001619 ECMGC 0.32001 -18.45821 0.21372 1600000 157423 0.002541 ECMLI 0.44045 -8.46739 4.89689 1600000 432058 0.002777 ECMGI 0.33742 -12.01430 4.19846 1600000 95033 0.004209 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 96 134 -7.972 -8.179 -0.026 -6.593 IL 1 1 2 1 4 1 22 99 136 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 98 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 23 96 134 -8.935 -0.010 -7.589 -2.797 -2.283 -3.551 1.834 D 4 2 3 5 3 0 17 94 132 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 97 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 22 95 133 -8.935 -0.010 -7.589 1.890 -3.658 -3.356 -3.085 D 7 5 3 8 3 0 16 93 131 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 96 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 21 94 132 -8.935 -0.011 -7.452 -0.999 -0.299 -2.001 1.285 D 10 8 3 11 3 0 15 92 130 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 95 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 21 93 131 -8.934 -0.010 -7.588 0.793 0.032 -1.537 -0.152 D 13 11 3 14 3 0 15 91 129 -6.188 -1.701 -0.559 IL 14 14 3 14 3 1 19 94 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 20 92 130 -8.284 -0.013 -7.387 -3.276 -2.995 -4.061 1.892 D 16 14 3 17 3 0 14 90 128 -6.188 -1.701 -0.559 IL 17 17 3 17 3 1 18 93 131 -1.449 -0.792 -4.150 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - U - - - ML 18 17 3 20 3 1 19 91 129 -8.933 -0.010 -7.587 -3.275 -2.993 -4.059 1.892 D 19 17 3 20 3 0 13 89 127 -6.208 -1.657 -0.579 IL 20 20 3 20 3 1 18 92 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - U - - - ML 21 20 3 23 3 1 18 90 128 -8.934 -0.010 -7.588 -2.850 -2.371 -3.606 1.842 D 22 20 3 23 3 0 12 88 126 -6.188 -1.701 -0.559 IL 23 23 3 23 3 1 17 91 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - G - - - ML 24 23 3 26 3 1 18 89 127 -8.934 -0.010 -7.588 -3.005 -4.608 1.915 -3.961 D 25 23 3 26 3 0 12 87 125 -6.188 -1.701 -0.559 IL 26 26 3 26 3 1 16 90 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - C - - - ML 27 26 3 29 3 1 17 88 126 -8.934 -0.013 -7.183 -2.887 1.832 -3.528 -2.199 D 28 26 3 29 3 0 11 86 124 -6.188 -1.701 -0.559 IL 29 29 3 29 3 1 16 89 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - a - - - ML 30 29 3 32 3 1 16 87 125 -8.931 -0.012 -7.344 0.773 -0.157 -0.422 -0.626 D 31 29 3 32 3 0 10 85 123 -6.231 -1.744 -0.539 IL 32 32 3 32 3 1 15 88 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - c - - - ML 33 32 3 35 3 1 15 86 124 -8.930 -0.014 -7.100 -0.317 0.386 0.264 -0.536 D 34 32 3 35 3 0 10 84 122 -6.254 -1.561 -0.626 IL 35 35 3 35 3 1 14 87 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - C - - - ML 36 35 3 38 3 1 14 85 123 -8.931 -0.024 -6.100 -0.726 1.155 -1.265 -0.411 D 37 35 3 38 3 0 9 83 120 -6.240 -1.700 -0.558 IL 38 38 3 38 3 1 13 86 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - c - - - ML 39 38 3 41 3 1 14 84 122 -2.658 -0.258 -7.580 -0.796 0.735 -0.968 0.320 D 40 38 3 41 3 0 8 79 117 -5.789 -0.631 -1.572 IL 41 41 3 41 3 1 14 87 125 -0.708 -1.415 -6.294 0.000 0.000 0.000 0.000 [ MATR 14 ] - 152 - G - - MR 42 41 3 44 3 1 13 73 94 -9.278 -0.010 -7.596 -2.895 -4.128 1.881 -2.986 D 43 41 3 44 3 0 6 71 92 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 11 74 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 151 - U - - MR 45 44 3 47 3 1 12 72 93 -9.278 -0.010 -7.596 -2.062 -2.305 -3.142 1.784 D 46 44 3 47 3 0 6 70 91 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 10 73 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 150 - A - - MR 48 47 3 50 3 1 11 71 92 -9.278 -0.010 -7.596 1.856 -2.864 -3.055 -3.031 D 49 47 3 50 3 0 5 69 90 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 10 72 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 149 - c - - MR 51 50 3 53 3 1 11 70 91 -9.278 -0.010 -7.596 0.629 0.713 -1.919 -0.862 D 52 50 3 53 3 0 4 68 89 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 9 71 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 148 - G - - MR 54 53 3 56 3 1 10 69 90 -9.278 -0.010 -7.596 -2.860 -4.522 1.907 -3.889 D 55 53 3 56 3 0 4 67 88 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 8 70 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 147 - G - - MR 57 56 3 59 3 1 9 68 89 -9.278 -0.012 -7.295 -0.241 -2.151 1.361 -1.471 D 58 56 3 59 3 0 3 66 87 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 8 69 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 146 - U - - MR 60 59 3 62 3 1 9 67 88 -9.276 -0.010 -7.594 -3.275 -2.993 -4.059 1.892 D 61 59 3 62 3 0 3 65 86 -6.417 -1.516 -0.647 IR 62 62 3 62 3 1 7 68 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 145 - U - - MR 63 62 3 65 3 1 8 66 87 -9.278 -0.010 -7.596 -2.783 -2.259 -3.536 1.832 D 64 62 3 65 3 0 2 64 85 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 6 67 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 144 - A - - MR 66 65 3 68 3 1 7 65 86 -9.278 -0.010 -7.596 1.819 -3.045 -2.581 -2.439 D 67 65 3 68 3 0 2 63 84 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 6 66 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 143 - U - - MR 69 68 3 71 3 1 6 64 85 -9.278 -0.010 -7.596 -3.278 -2.996 -4.062 1.892 D 70 68 3 71 3 0 1 62 83 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 5 65 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 142 - A - - MR 72 71 3 74 3 1 5 63 84 -9.278 -0.011 -7.403 1.928 -4.235 -3.715 -3.945 D 73 71 3 74 3 0 1 61 82 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 4 64 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 141 - A - - MR 75 74 3 77 3 1 4 62 83 -9.277 -0.010 -7.595 1.898 -3.858 -3.038 -3.603 D 76 74 3 77 3 0 0 60 81 -6.407 -1.535 -0.637 IR 77 77 3 77 3 1 4 63 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 140 - U - - MR 78 77 3 80 3 1 3 61 82 -7.237 -0.017 -7.596 -0.406 -0.416 -1.609 1.117 D 79 77 3 80 3 0 0 59 80 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 3 62 83 -1.918 -0.552 -4.226 0.000 0.000 0.000 0.000 [ MATR 27 ] - 137 - A - - MR 81 80 3 83 3 1 2 60 81 -9.278 -0.010 -7.596 1.369 -1.262 -1.558 -0.598 D 82 80 3 83 3 0 0 58 79 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 61 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 136 - A - - MR 84 83 3 86 3 1 1 59 80 -9.278 -0.650 -1.470 1.805 -2.624 -2.802 -2.317 D 85 83 3 86 3 0 0 58 79 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 60 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 135 - a - - MR 87 86 3 89 3 1 2 58 79 -8.644 -0.015 -6.961 0.930 -0.123 -1.206 -0.427 D 88 86 3 89 3 0 0 57 78 -9.118 -0.152 -3.348 IR 89 89 3 89 3 1 1 59 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 134 - A - - MR 90 89 3 92 3 1 2 57 78 -9.278 -0.010 -7.596 1.773 -2.550 -2.694 -1.964 D 91 89 3 92 3 0 0 55 77 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 58 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 133 - U - - MR 93 92 3 95 3 1 1 56 77 -6.726 -0.098 -4.156 -0.343 -1.333 -1.420 1.287 D 94 92 3 95 3 0 0 55 76 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 57 78 -1.883 -0.563 -4.271 0.000 0.000 0.000 0.000 [ MATR 32 ] - 129 - U - - MR 96 95 3 98 3 1 1 55 76 -9.203 -0.010 -7.520 -3.146 -2.880 -3.928 1.882 D 97 95 3 98 3 0 0 54 75 -7.242 -0.660 -1.472 IR 98 98 3 98 3 1 1 56 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 128 - U - - MR 99 98 3 101 3 1 1 54 75 -9.278 -0.010 -7.596 -2.395 -2.465 -3.351 1.820 D 100 98 3 101 3 0 0 52 74 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 55 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 127 - A - - MR 102 101 3 104 3 1 1 53 74 -9.278 -0.010 -7.596 1.928 -4.235 -3.715 -3.945 D 103 101 3 104 3 0 0 51 73 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 54 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 126 - C - - MR 105 104 3 107 3 1 1 52 73 -9.278 -0.010 -7.596 -1.566 1.325 -2.414 -0.046 D 106 104 3 107 3 0 0 50 72 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 53 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 125 - U - - MR 108 107 3 110 3 1 1 51 72 -9.278 -0.010 -7.596 -2.106 -1.960 -3.023 1.760 D 109 107 3 110 3 0 0 49 71 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 52 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 124 - A - - MR 111 110 3 113 3 1 1 50 71 -9.278 -0.010 -7.596 1.777 -2.445 -2.691 -2.091 D 112 110 3 113 3 0 0 48 70 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 51 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 123 - A - - MR 114 113 3 116 3 1 1 49 70 -8.903 -0.012 -7.340 1.785 -2.843 -2.388 -2.168 D 115 113 3 116 3 0 0 47 69 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 50 71 -1.930 -0.552 -4.168 0.000 0.000 0.000 0.000 [ MATR 39 ] - 121 - a - - MR 117 116 3 119 3 1 1 48 69 -9.277 -0.010 -7.594 0.674 -0.757 -1.059 0.415 D 118 116 3 119 3 0 0 46 68 -6.413 -1.524 -0.643 IR 119 119 3 119 3 1 1 49 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 120 - A - - MR 120 119 3 122 3 1 1 47 68 -9.278 -0.010 -7.596 1.883 -3.712 -2.784 -3.458 D 121 119 3 122 3 0 0 45 66 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 48 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 119 - A - - MR 123 122 3 125 3 1 1 46 67 -9.278 -0.010 -7.596 1.760 -2.352 -2.256 -2.263 D 124 122 3 125 3 0 0 44 65 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 47 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 118 - U - - MR 126 125 3 128 3 1 1 45 66 -9.278 -0.010 -7.596 -3.278 -2.996 -4.062 1.892 D 127 125 3 128 3 0 0 43 64 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 46 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 117 - A - - MR 129 128 3 131 3 1 1 44 65 -8.229 -0.012 -7.596 1.905 -3.861 -3.484 -3.386 D 130 128 3 131 3 0 0 42 63 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 45 66 -1.941 -0.547 -4.179 0.000 0.000 0.000 0.000 [ MATR 44 ] - 115 - C - - MR 132 131 3 134 3 1 1 43 64 -9.278 -0.010 -7.596 -3.891 1.912 -4.595 -2.975 D 133 131 3 134 3 0 0 41 62 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 44 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 114 - A - - MR 135 134 3 137 3 1 1 42 63 -9.278 -0.010 -7.596 1.690 -2.897 -1.089 -2.569 D 136 134 3 137 3 0 0 40 61 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 43 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 113 - U - - MR 138 137 3 140 3 1 1 41 62 -9.278 -0.273 -2.552 -1.824 -1.654 -2.661 1.697 D 139 137 3 140 3 0 0 39 60 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 42 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 112 - a - - MR 141 140 3 143 5 1 1 40 61 -1.455 -0.683 -7.536 -7.748 -8.640 0.629 -0.648 -0.220 -0.064 D 142 140 3 143 5 0 0 37 57 -6.653 -0.846 -4.280 -5.711 -1.461 IR 143 143 3 143 5 1 1 40 61 -1.303 -0.814 -7.915 -6.083 -7.189 0.000 0.000 0.000 0.000 [ MATP 48 ] 28 74 u a - - MP 144 143 3 148 6 2 2 37 57 -9.516 -9.456 -0.029 -7.231 -8.182 -7.166 -1.653 -1.819 -1.906 1.053 -1.419 -2.700 1.700 -2.148 -1.854 1.194 -2.564 -0.336 1.752 -1.612 0.192 -0.535 ML 145 143 3 148 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 32 52 -10.137 -8.835 -4.632 -5.314 -5.332 -0.141 IL 148 148 5 148 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 29 73 g c - - MP 150 149 6 154 6 2 2 35 55 -9.504 -9.443 -0.052 -7.971 -8.061 -5.333 -2.464 -2.432 -2.726 1.428 -2.515 -3.588 1.661 -3.001 -2.795 1.985 -3.376 -0.331 1.592 -2.879 -0.309 -1.753 ML 151 149 6 154 6 1 1 33 53 -6.332 -6.679 -1.256 -1.034 -6.528 -4.058 0.410 -0.323 -0.299 0.083 MR 152 149 6 154 6 1 1 33 53 -7.003 -5.732 -1.594 -5.710 -0.844 -3.924 0.387 -0.403 -0.201 0.093 D 153 149 6 154 6 0 0 30 50 -10.209 -8.908 -4.705 -5.387 -5.404 -0.134 IL 154 154 5 154 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 30 72 a u - - MP 156 155 6 160 6 2 2 33 53 -9.472 -9.412 -0.079 -6.483 -7.691 -4.874 -2.167 -2.210 -2.404 2.087 -2.361 -3.261 1.440 -2.630 -2.467 1.520 -3.055 -0.478 1.345 -2.436 -0.178 -1.144 ML 157 155 6 160 6 1 1 31 51 -6.292 -6.638 -1.317 -0.991 -6.488 -4.018 0.308 -0.370 -0.259 0.205 MR 158 155 6 160 6 1 1 31 51 -7.009 -5.738 -1.582 -5.716 -0.850 -3.930 0.332 -0.375 -0.232 0.161 D 159 155 6 160 6 0 0 28 48 -10.504 -9.202 -4.999 -5.681 -5.699 -0.108 IL 160 160 5 160 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 31 71 u a - - MP 162 161 6 166 6 2 2 31 51 -9.413 -9.353 -0.057 -7.408 -7.591 -5.350 -1.936 -2.102 -1.918 1.621 -2.041 -2.984 1.519 -2.393 -2.197 1.055 -2.761 -0.610 1.878 -1.853 0.201 -0.893 ML 163 161 6 166 6 1 1 30 49 -6.455 -6.801 -1.219 -1.044 -6.651 -4.180 0.354 -0.429 -0.379 0.275 MR 164 161 6 166 6 1 1 29 49 -7.030 -5.759 -1.565 -5.737 -0.856 -3.951 0.350 -0.347 -0.265 0.147 D 165 161 6 166 6 0 0 26 46 -10.830 -9.529 -5.326 -6.008 -6.025 -0.086 IL 166 166 5 166 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 30 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 32 70 u a - - MP 168 167 6 172 6 2 2 29 49 -9.385 -9.324 -0.038 -7.558 -7.811 -6.242 -2.158 -2.243 -2.322 1.609 -2.162 -3.201 1.564 -2.533 -2.412 1.157 -2.968 -0.579 1.984 -2.162 0.039 -1.222 ML 169 167 6 172 6 1 1 28 48 -6.386 -6.732 -1.130 -1.141 -6.582 -4.111 0.446 -0.457 -0.303 0.135 MR 170 167 6 172 6 1 1 28 48 -7.041 -5.770 -1.519 -5.749 -0.882 -3.962 0.515 -0.513 -0.143 -0.052 D 171 167 6 172 6 0 0 25 45 -11.014 -9.712 -5.509 -6.191 -6.209 -0.075 IL 172 172 5 172 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 28 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 33 69 g c - - MP 174 173 6 178 4 2 2 27 47 -7.570 -7.777 -0.357 -2.254 -2.803 -2.384 -2.740 1.697 -3.063 -3.712 1.206 -3.303 -2.959 2.468 -3.581 -0.219 1.027 -2.993 -0.745 -1.723 ML 175 173 6 178 4 1 1 27 47 -3.787 -3.969 -0.495 -2.698 0.377 -0.453 -0.075 0.031 MR 176 173 6 178 4 1 1 27 47 -4.843 -3.872 -1.633 -0.800 0.321 -0.308 -0.269 0.154 D 177 173 6 178 4 0 0 24 44 -6.541 -6.222 -4.238 -0.116 IL 178 178 5 178 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 34 - a - - - ML 180 179 6 182 3 1 1 25 44 -1.340 -0.745 -6.917 0.368 -0.122 -0.413 0.056 D 181 179 6 182 3 0 0 22 41 -8.338 -0.518 -1.743 IL 182 182 3 182 3 1 1 25 44 -1.526 -0.663 -5.567 0.000 0.000 0.000 0.000 [ MATL 55 ] 46 - A - - - ML 183 182 3 185 3 1 1 22 41 -8.798 -0.012 -7.452 1.444 -1.510 -1.460 -0.822 D 184 182 3 185 3 0 0 20 40 -7.574 -2.541 -0.281 IL 185 185 3 185 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 47 - a - - - ML 186 185 3 188 3 1 1 21 40 -8.810 -0.011 -7.464 0.926 -0.992 -0.848 0.059 D 187 185 3 188 3 0 0 19 38 -7.494 -3.007 -0.201 IL 188 188 3 188 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 48 - A - - - ML 189 188 3 191 3 1 1 20 39 -8.810 -0.339 -2.270 1.220 -1.272 -0.829 -0.527 D 190 188 3 191 3 0 0 18 38 -7.494 -3.007 -0.201 IL 191 191 3 191 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 49 - a - - - ML 192 191 3 194 3 1 1 19 39 -8.485 -0.183 -3.103 0.570 -0.737 -0.031 -0.095 D 193 191 3 194 3 0 0 17 37 -8.722 -4.235 -0.082 IL 194 194 3 194 3 1 1 21 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 50 - a - - - ML 195 194 3 197 3 1 1 18 38 -1.744 -1.038 -2.222 0.828 -0.452 -0.542 -0.310 D 196 194 3 197 3 0 0 17 36 -1.841 -2.507 -0.876 IL 197 197 3 197 3 1 1 18 38 -1.370 -0.947 -3.409 0.000 0.000 0.000 0.000 [ MATL 60 ] 68 - u - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.063 -0.396 -0.061 0.405 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME S15-Flavobacteria ACC RF03161 DESC S15-Flavobacteria ribosomal protein leader LENG 66 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 00:19:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03161/CM NSEQ 935 EFFN 7.985935 CKSUM 3963323426 STATS LOCAL MSV -7.7795 0.71881 STATS LOCAL VITERBI -8.9298 0.71881 STATS LOCAL FORWARD -3.4497 0.71881 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.02979 1.82552 1.87098 1.11532 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 0.00000 * 1 3.66411 3.18354 4.18425 0.08588 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 2 0.05429 4.28629 4.10049 3.79343 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 3 2.24016 1.60107 3.01496 0.44188 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01749 4.78195 4.71503 1.46634 0.26236 1.09861 0.40547 4 0.79384 1.32761 2.64540 1.55207 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.01691 4.78137 4.78137 1.46634 0.26236 1.12142 0.39425 5 4.10497 3.86226 4.65621 0.04815 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01930 4.62606 4.67563 1.28208 0.32498 1.12142 0.39425 6 4.10368 3.86109 4.65490 0.04822 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.01693 4.78043 4.78043 1.46634 0.26236 1.05138 0.42995 7 3.70621 3.25943 4.22851 0.08073 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.01691 4.78137 4.78137 1.46634 0.26236 1.12142 0.39425 8 3.77040 5.00168 0.04158 4.51341 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01691 4.78137 4.78137 1.46634 0.26236 1.12142 0.39425 9 3.71653 0.08336 4.07260 3.25379 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.01873 4.78137 4.58843 1.46634 0.26236 1.12142 0.39425 10 0.81224 1.46040 1.68717 1.97364 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.01800 4.77958 4.66287 1.46634 0.26236 1.18846 0.36340 11 1.69582 1.05217 1.14396 1.90504 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.01938 4.77854 4.52965 1.46634 0.26236 0.93536 0.49831 12 2.00470 0.51272 2.32961 1.77724 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.02730 4.77899 3.98862 1.46634 0.26236 1.13142 0.38945 13 2.10616 0.80497 2.09865 1.17580 14 c - - : 1.38629 1.38629 1.38629 1.38629 0.21367 1.69335 4.76951 1.15353 0.37910 0.59230 0.80532 14 1.73053 1.39285 1.52003 1.03356 28 u - - < 1.38629 1.38629 1.38629 1.38629 0.12563 4.78195 2.21017 1.46634 0.26236 1.09861 0.40547 15 1.57702 1.53212 1.17554 1.31423 29 g - - < 1.38629 1.38629 1.38629 1.38629 0.06759 4.67514 2.88190 1.46634 0.26236 2.57585 0.07914 16 1.10101 1.65921 1.50588 1.36510 30 a - - < 1.38629 1.38629 1.38629 1.38629 0.09127 4.62876 2.55795 1.46634 0.26236 2.80000 0.06274 17 1.37443 1.60474 1.72242 1.00119 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.07389 4.56089 2.80057 1.46634 0.26236 2.99179 0.05150 18 1.40768 1.59813 1.68809 0.99929 32 u - - < 1.38629 1.38629 1.38629 1.38629 0.04907 4.51298 3.29909 1.46634 0.26236 3.01709 0.05018 19 1.40554 1.89853 0.86067 1.70322 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.25852 4.49257 1.52963 1.46634 0.26236 3.25251 0.03944 20 1.12274 1.44508 1.67776 1.37795 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.65182 0.76599 4.26650 0.43854 1.03557 0.31748 1.30189 21 0.32687 2.58695 2.55914 2.06990 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01879 4.67699 4.67699 1.46634 0.26236 2.00980 0.14389 22 0.69912 2.16665 2.03158 1.35756 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01862 4.68621 4.68621 1.46634 0.26236 2.63152 0.07469 23 0.48321 2.39343 2.01994 1.83746 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.27536 4.68621 1.46327 1.46634 0.26236 2.63152 0.07469 24 0.96827 1.93868 1.38514 1.48687 49 a - - _ 1.38629 1.38629 1.38629 1.38629 0.13615 4.43485 2.15905 1.46634 0.26236 0.97929 0.47093 25 0.76678 1.70040 1.79214 1.68049 50 a - - _ 1.38629 1.38629 1.38629 1.38629 0.80373 1.06245 1.57633 0.41758 1.07481 1.43097 0.27322 26 1.46674 1.67104 1.39312 1.09970 68 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08318 4.36311 2.70190 1.46634 0.26236 1.00336 0.45673 27 1.92112 0.96334 1.71205 1.23290 69 c - - > 1.38629 1.38629 1.38629 1.38629 0.03607 4.49209 3.72006 1.46634 0.26236 2.27078 0.10896 28 1.19118 1.83360 1.36370 1.27087 70 a - - > 1.38629 1.38629 1.38629 1.38629 0.03491 4.50594 3.76095 1.46634 0.26236 1.69445 0.20297 29 1.24955 1.84295 1.32657 1.23915 71 u - - > 1.38629 1.38629 1.38629 1.38629 0.02282 4.54632 4.42644 1.46634 0.26236 1.12746 0.39135 30 1.62303 1.64792 1.44505 0.98212 72 u - - > 1.38629 1.38629 1.38629 1.38629 0.02462 4.62735 4.23071 1.46634 0.26236 1.22135 0.34932 31 1.48860 1.30750 1.35999 1.39775 73 c - - > 1.38629 1.38629 1.38629 1.38629 0.01893 4.66983 4.66983 1.46634 0.26236 1.73507 0.19405 32 1.27505 1.65784 1.21031 1.46133 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.71689 0.92288 2.16840 0.66331 0.72390 2.63152 0.07469 33 0.92267 1.86587 1.53055 1.46376 112 a - - : 1.38629 1.38629 1.38629 1.38629 0.02083 4.57512 4.57512 1.46634 0.26236 0.08236 2.53751 34 2.88191 2.70662 3.49791 0.16611 113 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 35 0.18130 3.75636 2.16482 3.58729 114 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 36 4.51537 0.03973 4.93189 3.87282 115 C - - : 1.38629 1.38629 1.38629 1.38629 0.01890 4.57117 4.78195 1.22267 0.34877 1.09861 0.40547 37 0.04496 4.45201 4.20275 4.05396 117 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 38 4.10582 3.86304 4.65709 0.04811 118 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 39 0.13620 3.14705 3.14860 3.18343 119 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 40 0.05862 4.33914 3.54725 4.19403 120 A - - : 1.38629 1.38629 1.38629 1.38629 0.01804 4.78195 4.65697 1.46634 0.26236 1.09861 0.40547 41 0.88468 1.97458 2.20188 1.08548 121 a - - : 1.38629 1.38629 1.38629 1.38629 0.01752 4.71347 4.78083 1.38291 0.28881 1.01705 0.44888 42 0.11882 3.62356 3.25488 3.06267 123 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 43 0.12462 3.23908 3.55448 3.00842 124 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 44 3.07148 2.93807 3.76264 0.13073 125 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 45 2.71746 0.41072 3.30561 1.45198 126 C - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 46 0.03144 4.77830 4.39867 4.58075 127 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 47 3.28792 3.38094 4.01833 0.09357 128 U - - : 1.38629 1.38629 1.38629 1.38629 0.07635 4.78195 2.73139 1.46634 0.26236 1.09861 0.40547 48 4.01542 3.78107 4.56500 0.05260 129 U - - : 1.38629 1.38629 1.38629 1.38629 0.02713 4.02394 4.72352 0.96157 0.48174 0.22899 1.58640 49 1.67055 2.49848 2.48904 0.43594 133 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 50 0.12670 3.34737 3.55995 2.89350 134 A - - : 1.38629 1.38629 1.38629 1.38629 0.53745 4.78195 0.89800 1.46634 0.26236 1.09861 0.40547 51 0.67709 1.44272 2.38208 1.81240 135 A - - : 1.38629 1.38629 1.38629 1.38629 0.02828 4.27278 4.27278 1.46634 0.26236 0.04032 3.23112 52 0.10769 3.37211 3.63618 3.18381 136 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 53 0.37888 2.37491 2.64677 1.88736 137 A - - : 1.38629 1.38629 1.38629 1.38629 0.02258 4.27249 4.78195 1.02959 0.44185 1.09861 0.40547 54 1.72384 1.69719 2.66010 0.56479 140 U - - : 1.38629 1.38629 1.38629 1.38629 0.01773 4.78195 4.68957 1.46634 0.26236 1.09861 0.40547 55 0.04933 4.45655 3.77068 4.30561 141 A - - : 1.38629 1.38629 1.38629 1.38629 0.01692 4.78114 4.78114 1.46634 0.26236 1.03799 0.43721 56 0.03144 4.77830 4.39867 4.58075 142 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 57 4.10582 3.86304 4.65709 0.04811 143 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 58 0.09850 3.77503 3.40992 3.27470 144 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 59 3.65291 3.16280 4.17252 0.08734 145 U - - : 1.38629 1.38629 1.38629 1.38629 0.01822 4.78195 4.63836 1.46634 0.26236 1.09861 0.40547 60 4.10377 3.86117 4.65499 0.04821 146 U - - : 1.38629 1.38629 1.38629 1.38629 0.01692 4.78065 4.78065 1.46634 0.26236 1.00522 0.45565 61 1.59491 3.08226 0.39192 2.58415 147 G - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 62 3.64043 4.93406 0.04605 4.45980 148 G - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 63 0.91212 0.81851 3.02105 2.22110 149 c - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 64 0.07397 3.54839 3.85703 3.84443 150 A - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 65 3.01564 3.26569 3.87296 0.11427 151 U - - : 1.38629 1.38629 1.38629 1.38629 0.01690 4.78195 4.78195 1.46634 0.26236 1.09861 0.40547 66 3.76049 4.63672 0.06173 3.61562 152 G - - : 1.38629 1.38629 1.38629 1.38629 0.00849 4.77353 * 1.46634 0.26236 0.00000 * //