INFERNAL1/a [1.1.5 | Sep 2023] NAME twister-P1 ACC RF03160 DESC type-P1 twister ribozyme STATES 213 NODES 57 CLEN 68 W 126 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:20:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03160/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1613 EFFN 19.243841 CKSUM 989086891 NULL 0.000 0.000 0.000 0.000 GA 67.20 TC 67.20 NC 67.10 EFP7GF -19.6905 0.71935 ECMLC 0.70858 -4.37397 3.54356 1600000 327832 0.003660 ECMGC 0.40626 -17.94338 -5.09164 1600000 74056 0.005401 ECMLI 0.66077 -3.65275 4.57784 1600000 276134 0.004346 ECMGI 0.42829 -13.82121 -2.01531 1600000 62805 0.006369 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 126 208 -10.632 -10.571 -0.016 -8.735 -7.251 -10.022 IL 1 1 2 1 6 2 24 127 209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 2 24 127 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 189 c g - - MP 3 2 3 7 6 5 28 126 208 -10.623 -10.562 -0.007 -9.339 -9.618 -10.013 -0.998 -1.902 -0.083 1.083 -1.171 -2.998 1.626 -2.632 -1.098 0.877 -1.269 -0.775 1.559 -2.469 0.631 -1.423 ML 4 2 3 7 6 1 22 124 206 -6.294 -6.640 -1.355 -0.962 -6.490 -4.020 0.497 -0.475 -0.196 -0.006 MR 5 2 3 7 6 1 22 124 206 -7.222 -5.951 -1.233 -5.929 -1.063 -4.142 0.298 -0.664 0.310 -0.151 D 6 2 3 7 6 0 18 120 202 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 2 23 125 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 2 24 125 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 188 c g - - MP 9 8 6 13 6 4 27 124 206 -10.631 -10.570 -0.014 -7.527 -9.626 -8.961 -1.935 -2.138 -0.568 1.078 -2.164 -3.288 2.021 -2.700 -2.180 0.836 -1.701 -0.945 1.554 -2.477 0.908 -1.460 ML 10 8 6 13 6 1 22 122 204 -6.294 -6.640 -1.248 -1.049 -6.490 -4.020 0.306 -0.370 -0.262 0.210 MR 11 8 6 13 6 1 21 121 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 17 118 200 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 2 23 123 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 2 23 123 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 187 u a - - MP 15 14 6 19 6 4 26 122 204 -10.625 -10.564 -0.016 -7.742 -9.290 -8.070 -2.068 -2.506 -2.401 1.760 -2.011 -2.880 1.716 -2.382 -2.125 0.499 -2.966 -0.144 1.830 -2.639 -0.401 0.001 ML 16 14 6 19 6 1 21 120 202 -6.450 -6.796 -1.436 -0.876 -6.646 -4.175 0.215 -0.369 -0.272 0.307 MR 17 14 6 19 6 1 19 120 202 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 17 117 200 -9.120 -7.819 -2.944 -4.298 -4.315 -0.391 IL 19 19 5 19 6 1 22 121 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 2 22 121 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 186 u a - - MP 21 20 6 25 4 3 24 120 202 -7.432 -3.448 -0.155 -7.853 -2.166 -2.321 -2.266 1.452 -2.132 -3.284 1.256 -0.923 -1.439 1.055 -2.309 0.159 1.519 -2.562 0.623 0.064 ML 22 20 6 25 4 1 20 119 201 -4.001 -4.184 -0.416 -2.913 0.161 -0.284 -0.234 0.275 MR 23 20 6 25 4 1 18 118 200 -4.827 -3.856 -1.724 -0.754 0.342 -0.378 -0.221 0.144 D 24 20 6 25 4 0 17 117 199 -4.738 -4.419 -1.757 -0.690 IL 25 25 5 25 4 1 22 119 202 -1.840 -2.523 -0.956 -5.009 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 22 119 201 -1.600 -0.627 -5.475 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - U - - - ML 27 26 6 29 3 2 23 118 200 -10.439 -0.004 -9.093 -2.185 -2.148 -2.971 1.777 D 28 26 6 29 3 0 16 115 198 -6.270 -1.495 -0.661 IL 29 29 3 29 3 1 20 118 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - A - - - ML 30 29 3 32 3 2 22 117 199 -10.441 -0.004 -8.939 1.948 -4.539 -4.435 -4.244 D 31 29 3 32 3 0 15 115 197 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 20 117 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - A - - - ML 33 32 3 35 3 2 21 116 198 -8.341 -0.008 -8.552 1.944 -4.551 -4.023 -4.392 D 34 32 3 35 3 0 14 114 196 -5.629 -0.727 -1.412 IL 35 35 3 35 3 1 18 116 198 -1.986 -0.527 -4.225 0.000 0.000 0.000 0.000 [ MATR 8 ] - 181 - G - - MR 36 35 3 38 3 1 21 115 197 -10.751 -0.004 -9.068 -0.762 -1.641 1.539 -2.452 D 37 35 3 38 3 0 13 112 194 -6.440 -1.474 -0.670 IR 38 38 3 38 3 1 17 115 197 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 180 - G - - MR 39 38 3 41 3 1 20 114 196 -10.752 -0.004 -9.069 -1.010 -1.324 1.220 -0.369 D 40 38 3 41 3 0 12 111 193 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 17 114 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 179 - G - - MR 42 41 3 44 3 1 19 113 195 -10.752 -0.004 -8.896 -1.767 -2.511 1.697 -1.796 D 43 41 3 44 3 0 11 110 193 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 16 113 195 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 178 - A - - MR 45 44 3 47 3 1 18 112 194 -10.751 -0.004 -9.069 1.958 -4.865 -4.296 -5.140 D 46 44 3 47 3 0 11 109 192 -6.405 -1.539 -0.635 IR 47 47 3 47 3 1 15 112 194 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 177 - G - - MR 48 47 3 50 5 1 17 111 193 -8.853 -0.017 -9.226 -7.093 -10.330 -3.318 -4.916 1.932 -4.267 D 49 47 3 50 5 0 10 109 191 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 14 111 193 -2.422 -0.491 -5.934 -4.101 -5.207 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 175 c g - - MP 51 50 3 55 6 2 17 110 192 -10.625 -10.564 -0.009 -8.664 -9.620 -10.015 -4.398 -3.065 -4.294 0.715 -2.893 -4.648 2.704 -4.275 -3.874 -0.243 -4.953 -1.929 2.473 -4.207 -1.043 -3.295 ML 52 50 3 55 6 1 12 108 190 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 12 107 190 -7.201 -5.930 -1.262 -5.908 -1.042 -4.122 0.767 -0.662 -0.379 -0.156 D 54 50 3 55 6 0 8 104 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 13 109 191 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 13 109 191 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 174 g c - - MP 57 56 6 61 6 2 15 108 190 -10.630 -10.570 -0.008 -9.346 -9.146 -10.021 -4.471 -3.875 -4.690 0.445 -3.868 -5.083 1.159 -4.663 -4.766 2.548 -5.210 -1.595 2.431 -4.742 -1.550 -3.296 ML 58 56 6 61 6 1 11 106 188 -6.300 -6.646 -1.360 -0.956 -6.496 -4.025 0.298 -0.369 -0.270 0.223 MR 59 56 6 61 6 1 11 105 188 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 8 102 185 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 12 107 189 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 13 107 189 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 173 C G - - MP 63 62 6 67 6 2 14 106 188 -10.630 -10.569 -0.018 -9.345 -7.666 -7.680 -5.247 -4.994 -4.865 0.130 -3.521 -4.658 3.470 -4.579 -5.100 -0.491 -4.628 -2.612 1.063 -5.419 -1.204 -3.841 ML 64 62 6 67 6 1 11 104 186 -6.300 -6.646 -1.240 -1.055 -6.496 -4.025 0.383 -0.509 0.046 -0.058 MR 65 62 6 67 6 1 10 104 186 -7.011 -5.740 -1.577 -5.718 -0.852 -3.932 0.329 -0.374 -0.236 0.168 D 66 62 6 67 6 0 8 102 184 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 12 105 187 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 12 105 187 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 172 c g - - MP 69 68 6 73 4 2 12 104 186 -9.499 -2.503 -0.289 -8.120 -2.368 -2.561 -2.481 1.882 -2.313 -3.323 2.359 -2.777 -1.581 1.111 -3.175 -1.078 0.963 -2.454 -0.600 -1.619 ML 70 68 6 73 4 1 10 102 184 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 9 102 184 -4.998 -2.907 -1.645 -0.955 0.391 -0.311 -0.323 0.115 D 72 68 6 73 4 0 8 101 183 -4.805 -2.354 -2.502 -0.756 IL 73 73 5 73 4 1 11 104 186 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 11 105 187 -0.596 -1.591 -7.262 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 75 74 6 77 3 1 10 101 183 -10.441 -0.004 -9.095 -0.721 -3.412 1.648 -2.599 D 76 74 6 77 3 0 7 99 181 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 101 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - C - - - ML 78 77 3 80 3 1 9 100 182 -10.752 -0.188 -3.041 -4.172 1.903 -3.338 -3.231 D 79 77 3 80 3 0 7 98 181 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 9 100 182 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 147 - A - - MR 81 80 3 83 3 1 9 99 181 -10.568 -0.004 -8.886 1.822 -3.060 -2.199 -2.985 D 82 80 3 83 3 0 6 98 180 -9.034 -0.474 -1.846 IR 83 83 3 83 3 1 8 99 181 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 146 - A - - MR 84 83 3 86 3 1 8 98 180 -10.715 -0.004 -9.033 1.777 -2.662 -2.172 -2.368 D 85 83 3 86 3 0 5 97 179 -7.452 -1.019 -0.998 IR 86 86 3 86 3 1 7 98 180 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 145 - A - - MR 87 86 3 89 3 1 7 97 179 -10.739 -0.004 -9.056 1.680 -2.777 -1.344 -1.969 D 88 86 3 89 3 0 4 96 179 -6.871 -0.929 -1.100 IR 89 89 3 89 3 1 6 97 179 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 144 - U - - MR 90 89 3 92 3 1 6 96 178 -10.752 -0.004 -9.069 -0.133 -1.363 -1.376 1.210 D 91 89 3 92 3 0 4 97 179 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 97 179 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 143 - g - - MR 93 92 3 95 2 1 5 95 177 -5.691 -0.028 0.639 -2.281 0.853 -1.213 D 94 92 3 95 2 0 4 98 180 -4.432 -0.068 IR 95 95 3 95 2 1 6 111 194 -0.323 -2.316 0.000 0.000 0.000 0.000 [ BIF 24 ] - - - - - - B 96 95 3 97 162 0 4 76 120 [ BEGL 25 ] - - - - - - S 97 96 1 98 4 0 0 60 104 -0.200 -8.634 -7.114 -3.064 [ MATP 26 ] 16 109 C G - - MP 98 97 1 102 6 2 2 60 104 -10.463 -10.402 -0.076 -9.179 -6.579 -4.720 -5.590 -5.388 -5.453 -0.944 -3.777 -5.052 3.506 -3.952 -5.373 -0.657 -5.792 -3.051 1.394 -5.711 -1.371 -4.118 ML 99 97 1 102 6 1 1 58 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 1 102 6 1 1 58 102 -7.130 -5.859 -1.696 -5.838 -0.763 -4.051 0.678 -0.597 -0.303 -0.108 D 101 97 1 102 6 0 0 50 94 -11.686 -10.384 -6.181 -6.863 -6.881 -0.047 IL 102 102 5 102 6 1 1 59 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 59 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 108 u u - - MP 104 103 6 108 6 2 2 58 102 -10.396 -10.335 -0.016 -9.112 -8.847 -7.577 -2.305 -1.920 -2.572 1.556 -2.339 -3.419 1.056 -2.765 -2.638 0.924 -3.206 -0.655 1.329 -2.359 -0.535 1.890 ML 105 103 6 108 6 1 1 56 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 56 100 -7.426 -6.155 -1.255 -6.133 -1.007 -4.346 0.287 -0.322 -0.093 0.059 D 107 103 6 108 6 0 0 48 92 -12.016 -10.714 -6.511 -7.193 -7.211 -0.037 IL 108 108 5 108 6 1 1 57 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 57 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 107 g c - - MP 110 109 6 114 6 2 2 56 100 -10.402 -10.341 -0.033 -9.117 -9.397 -5.786 -4.103 -2.340 -3.753 1.122 -4.050 -3.683 1.443 -4.557 -3.914 2.991 -4.381 -0.747 0.589 -3.883 -2.032 -3.099 ML 111 109 6 114 6 1 1 54 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 54 98 -7.164 -5.893 -1.314 -5.872 -1.005 -4.085 0.354 -0.118 -0.448 0.094 D 113 109 6 114 6 0 0 47 91 -12.047 -10.745 -6.542 -7.224 -7.242 -0.036 IL 114 114 5 114 6 1 1 55 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 55 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 106 u a - - MP 116 115 6 120 6 2 2 54 98 -10.384 -10.323 -0.137 -6.904 -9.379 -3.663 -3.213 -3.357 -3.730 0.799 -2.424 -4.579 1.759 -3.737 -3.515 0.947 -4.272 -1.362 2.780 -3.582 -0.466 -2.667 ML 117 115 6 120 6 1 1 53 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 52 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 46 90 -12.169 -10.867 -6.664 -7.346 -7.364 -0.033 IL 120 120 5 120 6 1 1 54 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 53 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 105 a u - - MP 122 121 6 126 6 2 2 52 96 -10.256 -10.196 -0.139 -6.661 -6.372 -3.871 -2.247 -2.117 -2.379 2.507 -2.402 -3.132 1.493 -2.763 -2.565 1.099 -2.908 -0.537 0.914 -2.362 -0.259 -1.434 ML 123 121 6 126 6 1 1 51 95 -6.525 -6.871 -1.032 -1.219 -6.721 -4.251 0.688 -0.603 -0.407 -0.035 MR 124 121 6 126 6 1 1 51 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 45 89 -12.620 -11.318 -7.115 -7.797 -7.815 -0.024 IL 126 126 5 126 6 1 1 52 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 52 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 104 g c - - MP 128 127 6 132 4 2 2 51 95 -8.848 -9.055 -0.180 -3.139 -2.327 -1.740 -2.781 1.004 -2.850 -3.398 1.219 -2.988 -1.992 2.012 -3.087 1.675 0.938 -2.498 -0.552 -1.776 ML 129 127 6 132 4 1 1 50 94 -4.008 -4.191 -0.413 -2.920 0.260 -0.322 -0.238 0.207 MR 130 127 6 132 4 1 1 49 93 -5.197 -4.226 -1.090 -1.154 0.427 -0.482 -0.239 0.126 D 131 127 6 132 4 0 0 45 89 -8.326 -8.008 -6.023 -0.033 IL 132 132 5 132 4 1 1 51 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 50 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - C - - - ML 134 133 6 136 3 1 1 49 93 -9.672 -0.061 -4.647 -0.770 1.195 -1.201 -0.539 D 135 133 6 136 3 0 0 44 88 -10.651 -5.512 -0.033 IL 136 136 3 136 3 1 1 50 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - U - - - ML 137 136 3 139 3 1 1 48 92 -0.350 -2.236 -8.280 -0.738 -0.790 -1.261 1.266 D 138 136 3 139 3 0 0 44 88 -6.795 -0.056 -5.102 IL 139 139 3 139 3 1 1 47 91 -0.893 -1.131 -7.624 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - u - - - ML 140 139 3 142 3 1 1 44 88 -10.439 -0.004 -9.093 -0.407 0.114 -0.663 0.615 D 141 139 3 142 3 0 0 42 86 -6.253 -1.766 -0.530 IL 142 142 3 142 3 1 1 45 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - u - - - ML 143 142 3 145 3 1 1 43 87 -10.439 -0.004 -9.093 0.167 -0.179 -0.847 0.524 D 144 142 3 145 3 0 0 41 85 -6.253 -1.766 -0.530 IL 145 145 3 145 3 1 1 44 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - u - - - ML 146 145 3 148 3 1 1 42 86 -10.439 -0.034 -5.486 0.198 0.200 -1.206 0.345 D 147 145 3 148 3 0 0 40 84 -6.253 -1.766 -0.530 IL 148 148 3 148 3 1 1 43 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - u - - - ML 149 148 3 151 3 1 1 41 85 -10.409 -0.613 -1.534 0.164 -0.797 -0.090 0.448 D 150 148 3 151 3 0 0 39 84 -7.250 -2.763 -0.241 IL 151 151 3 151 3 1 1 42 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - a - - - ML 152 151 3 154 3 1 1 40 84 -0.785 -2.801 -1.856 0.590 -1.266 0.331 -0.285 D 153 151 3 154 3 0 0 39 83 -0.945 -4.493 -1.197 IL 154 154 3 154 3 1 1 41 85 -0.603 -1.861 -3.912 0.000 0.000 0.000 0.000 [ MATL 39 ] 102 - g - - - ML 155 154 3 157 3 1 1 12 30 -9.598 -0.026 -5.941 0.505 -1.362 0.648 -0.679 D 156 154 3 157 3 0 0 10 29 -10.745 -3.639 -0.122 IL 157 157 3 157 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 103 - G - - - ML 158 157 3 160 2 1 1 1 1 * 0.000 -0.861 -1.259 1.345 -1.028 D 159 157 3 160 2 0 0 0 0 * 0.000 IL 160 160 3 160 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 161 160 3 -1 0 0 0 0 0 [ BEGR 42 ] - - - - - - S 162 96 1 163 5 0 0 28 47 -9.411 -0.042 -5.308 -9.438 -10.330 IL 163 163 2 163 5 1 1 30 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 110 126 c g - - MP 164 163 2 168 6 2 2 28 47 -10.604 -10.543 -0.007 -9.319 -9.599 -9.994 -2.406 -2.716 -2.610 1.792 -1.953 -3.437 2.641 -2.726 -2.759 0.604 -3.431 -0.880 0.925 -2.996 -0.636 -1.649 ML 165 163 2 168 6 1 1 28 46 -7.046 -7.392 -0.608 -1.801 -7.242 -4.771 0.651 -0.413 -0.595 0.023 MR 166 163 2 168 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 2 168 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 111 125 C G - - MP 170 169 6 174 6 2 2 26 45 -10.632 -10.571 -0.007 -9.347 -9.627 -10.022 -5.022 -4.752 -4.522 0.434 -2.758 -5.860 3.308 -4.402 -4.900 0.841 -5.412 -2.243 0.869 -5.210 -1.230 -3.641 ML 171 169 6 174 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 112 124 G C - - MP 176 175 6 180 4 2 2 24 43 -9.513 -9.720 -0.009 -8.134 -4.829 -2.767 -4.649 1.318 -5.766 -5.242 -0.180 -5.335 -4.798 3.388 -4.900 -0.888 -0.034 -4.183 -2.846 -3.614 ML 177 175 6 180 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 113 - G - - - ML 182 181 6 184 3 1 1 22 40 -10.441 -0.004 -9.095 -3.723 -6.122 1.951 -4.561 D 183 181 6 184 3 0 0 22 40 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 114 - U - - - ML 185 184 3 187 3 1 1 21 39 -10.441 -0.004 -9.095 -3.647 -3.160 -3.865 1.903 D 186 184 3 187 3 0 0 21 39 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 115 - C - - - ML 188 187 3 190 3 1 1 20 38 -10.441 -0.004 -9.095 -2.416 1.476 -1.773 -0.438 D 189 187 3 190 3 0 0 20 38 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 116 - C - - - ML 191 190 3 193 3 1 1 18 37 -10.441 -0.004 -9.095 -0.314 1.136 -1.263 -0.781 D 192 190 3 193 3 0 0 19 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 117 - C - - - ML 194 193 3 196 3 1 1 17 36 -10.441 -0.004 -9.095 -1.923 1.719 -2.885 -1.694 D 195 193 3 196 3 0 0 18 36 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 118 - A - - - ML 197 196 3 199 3 1 1 16 34 -10.441 -0.004 -9.095 1.927 -3.575 -3.907 -4.439 D 198 196 3 199 3 0 0 17 35 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 119 - A - - - ML 200 199 3 202 3 1 1 15 33 -10.441 -0.004 -9.095 1.950 -5.232 -3.930 -4.534 D 201 199 3 202 3 0 0 16 34 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 120 - G - - - ML 203 202 3 205 3 1 1 14 32 -10.441 -0.004 -9.095 -3.102 -3.089 1.887 -3.889 D 204 202 3 205 3 0 0 15 33 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 121 - C - - - ML 206 205 3 208 3 1 1 12 30 -8.495 -0.007 -8.940 -2.992 1.686 -3.906 -0.762 D 207 205 3 208 3 0 0 13 31 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 17 35 -1.480 -0.771 -4.180 0.000 0.000 0.000 0.000 [ MATL 55 ] 123 - C - - - ML 209 208 3 211 2 1 1 1 1 * 0.000 -4.432 1.940 -4.681 -3.668 D 210 208 3 211 2 0 0 0 0 * 0.000 IL 211 211 3 211 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 212 211 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME twister-P1 ACC RF03160 DESC type-P1 twister ribozyme LENG 68 MAXL 200 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:20:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03160/CM NSEQ 1613 EFFN 1613.000000 CKSUM 989086891 STATS LOCAL MSV -8.0794 0.71935 STATS LOCAL VITERBI -8.6413 0.71935 STATS LOCAL FORWARD -3.9995 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34249 1.41956 1.25412 1.55279 1.38629 1.38629 1.38629 1.38629 0.00012 9.68238 9.68238 1.46634 0.26236 0.00000 * 1 1.37594 1.44502 1.67957 1.12330 1 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00012 9.68238 9.68238 1.46634 0.26236 1.09861 0.40547 2 1.69610 1.12621 2.04825 1.01230 2 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00134 9.68980 6.66585 1.46634 0.26236 1.09861 0.40547 3 1.30614 1.42750 2.21028 0.96874 3 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00447 9.68859 5.42642 1.46634 0.26236 0.09278 2.42358 4 1.64230 1.79839 1.41029 0.92425 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00597 5.32621 6.82326 0.02538 3.68635 0.13640 2.05956 5 3.17291 3.18609 3.75894 0.11263 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.00012 9.68832 9.68832 1.46634 0.26236 0.07755 2.59539 6 0.01535 5.39810 5.61925 4.95034 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.00036 9.68980 8.13472 1.46634 0.26236 1.09861 0.40547 7 0.01711 5.49913 4.78817 5.39361 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.00968 5.85132 4.99674 0.04252 3.17897 0.35231 1.21424 8 2.33955 0.75303 4.64842 0.86011 10 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00012 9.68308 9.68308 1.46634 0.26236 0.01816 4.01784 9 2.93644 2.40005 0.85811 0.83871 11 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00082 9.68980 7.18536 1.46634 0.26236 1.09861 0.40547 10 3.01589 0.17125 4.64401 2.31497 12 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01028 9.68910 4.58885 1.46634 0.26236 0.15138 1.96268 11 1.18844 0.81985 1.82084 2.37606 13 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00013 9.67965 9.67965 1.46634 0.26236 0.01212 4.41922 12 1.91071 5.30120 0.18978 3.91733 14 G - - , 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 13 5.34224 0.04681 3.66032 4.18473 15 C - - , 1.38629 1.38629 1.38629 1.38629 0.16740 9.68980 1.87028 1.46634 0.26236 1.09861 0.40547 14 4.71556 0.18939 4.34726 1.89288 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.06973 9.52254 2.69887 1.46634 0.26236 5.31588 0.00493 15 1.47390 2.80411 2.24395 0.50357 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.00737 9.45385 4.92488 1.46634 0.26236 3.00758 0.05067 16 2.14813 1.54291 0.54708 2.39796 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02593 9.45973 3.66851 1.46634 0.26236 3.64005 0.02660 17 2.36190 1.77590 2.16467 0.47539 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.12491 9.44083 2.14265 1.46634 0.26236 8.17830 0.00028 18 0.47943 1.82825 2.08826 2.34060 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.12859 9.31610 2.11549 1.46634 0.26236 8.52504 0.00020 19 2.33265 2.08483 0.43063 2.05157 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.13117 9.18772 2.09693 1.46634 0.26236 3.59872 0.02774 20 2.23280 0.36482 2.24893 2.37583 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03736 9.07681 3.30889 1.46634 0.26236 4.82828 0.00803 21 2.33209 2.11371 2.48876 0.35795 23 U - - _ 1.38629 1.38629 1.38629 1.38629 2.57574 0.07928 9.04657 0.76714 0.62425 0.00026 8.25135 22 1.93770 1.22333 1.89036 0.88989 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00123 9.68980 6.75521 1.46634 0.26236 1.09861 0.40547 23 1.30420 1.47035 2.12682 0.96877 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68870 9.68870 1.46634 0.26236 3.03562 0.04924 24 1.25831 1.14524 2.54378 1.14209 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02226 9.68870 3.81886 1.46634 0.26236 3.03562 0.04924 25 1.31710 2.10695 1.36356 1.03639 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.18289 9.66656 1.78932 1.46634 0.26236 1.28510 0.32383 26 0.86721 2.88605 0.99667 1.86448 46 a - - _ 1.38629 1.38629 1.38629 1.38629 2.20674 0.42713 1.43732 1.01822 0.44822 2.71248 0.06868 27 0.92342 2.92356 0.77970 2.40180 102 g - - _ 1.38629 1.38629 1.38629 1.38629 0.20170 9.23928 1.70065 1.46634 0.26236 3.17449 0.04271 28 2.39382 2.31188 0.33410 2.36807 103 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01530 9.06641 4.19502 1.46634 0.26236 1.75858 0.18909 29 2.16331 1.25384 1.90148 0.79783 104 u - - > 1.38629 1.38629 1.38629 1.38629 0.01132 9.19221 4.49576 1.46634 0.26236 1.59584 0.22657 30 2.94222 2.23304 1.64242 0.43612 105 U - - > 1.38629 1.38629 1.38629 1.38629 0.00018 9.30520 9.30520 1.46634 0.26236 1.17207 0.37066 31 0.50007 2.23986 1.68170 2.29283 106 A - - > 1.38629 1.38629 1.38629 1.38629 0.00016 9.44083 9.44083 1.46634 0.26236 2.38707 0.09640 32 2.36785 0.54441 1.55880 2.15637 107 C - - > 1.38629 1.38629 1.38629 1.38629 0.00015 9.46643 9.46643 1.46634 0.26236 3.70537 0.02490 33 1.95406 2.28377 2.59844 0.38271 108 U - - > 1.38629 1.38629 1.38629 1.38629 0.00015 9.47249 9.47249 1.46634 0.26236 1.45096 0.26702 34 1.90257 4.25856 0.19226 4.45827 109 G - - > 1.38629 1.38629 1.38629 1.38629 0.00015 9.52779 9.52779 1.46634 0.26236 0.00083 7.09787 35 1.23594 0.60568 2.53625 2.47015 110 C - - < 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 36 2.69856 0.25833 2.32055 2.77845 111 C - - < 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 37 1.92720 3.41192 0.26340 2.93681 112 G - - < 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 38 4.35107 10.34321 0.01973 5.01943 113 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 39 8.27882 4.84335 4.99765 0.01500 114 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 40 4.23810 0.28735 2.58547 1.83288 115 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 41 1.65949 0.46475 2.34765 2.45486 116 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 42 2.83848 0.14306 3.51980 3.09713 117 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 43 0.02556 4.04249 4.88192 9.23994 118 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 44 0.01806 9.81816 4.42354 5.14086 119 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 45 4.48310 3.59513 0.04382 5.49304 120 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 46 4.62645 0.17094 5.18107 1.95390 121 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00263 6.05852 8.13919 0.05215 2.97963 1.09861 0.40547 47 5.61670 0.01731 5.49674 4.66416 123 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68957 9.68957 1.46634 0.26236 0.35364 1.21110 48 2.94988 0.26702 3.38190 1.91044 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 49 2.74009 2.33835 0.26056 2.68339 125 G - - > 1.38629 1.38629 1.38629 1.38629 0.02676 9.68980 3.63661 1.46634 0.26236 1.09861 0.40547 50 2.53242 2.79424 0.59235 1.18303 126 G - - > 1.38629 1.38629 1.38629 1.38629 0.02105 3.87441 9.66317 2.41738 0.09338 0.00469 5.36474 51 0.85855 3.77829 0.74073 2.56926 143 g - - , 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 52 1.53021 2.74496 2.64158 0.43385 144 U - - , 1.38629 1.38629 1.38629 1.38629 0.00979 9.68980 4.63749 1.46634 0.26236 1.09861 0.40547 53 0.17345 4.12611 2.34046 3.06167 145 A - - , 1.38629 1.38629 1.38629 1.38629 0.01748 9.68013 4.05929 1.46634 0.26236 5.06501 0.00633 54 0.10427 3.80287 3.08749 3.47064 146 A - - , 1.38629 1.38629 1.38629 1.38629 0.10952 9.66278 2.26650 1.46634 0.26236 6.07191 0.00231 55 0.07331 4.31062 3.11920 4.33730 147 A - - , 1.38629 1.38629 1.38629 1.38629 0.25784 1.48187 9.55340 1.18741 0.36386 0.00097 6.93849 56 2.32500 1.97757 0.80649 1.14763 172 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00144 9.68980 6.58980 1.46634 0.26236 1.09861 0.40547 57 2.38070 4.71328 0.16355 3.00750 173 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68849 9.68849 1.46634 0.26236 3.18627 0.04220 58 0.84663 0.86183 2.38172 2.87596 174 a - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68849 9.68849 1.46634 0.26236 0.08627 2.49312 59 0.85611 4.35249 0.75572 2.37903 175 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00091 7.06894 9.68980 0.13962 2.03781 1.09861 0.40547 60 4.14145 5.61379 0.02601 5.09565 177 G - - - 1.38629 1.38629 1.38629 1.38629 0.00039 9.68980 8.01815 1.46634 0.26236 1.09861 0.40547 61 0.01177 5.39495 4.94911 9.48480 178 A - - - 1.38629 1.38629 1.38629 1.38629 0.00012 9.68953 9.68953 1.46634 0.26236 0.31909 1.29760 62 3.18090 3.51844 0.13807 2.85131 179 G - - - 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 63 2.45863 2.41755 0.46245 1.63186 180 G - - - 1.38629 1.38629 1.38629 1.38629 0.00103 9.68980 6.94009 1.46634 0.26236 1.09861 0.40547 64 1.98695 2.55887 0.26346 4.06831 181 G - - - 1.38629 1.38629 1.38629 1.38629 0.11444 2.34672 4.38594 0.36441 1.18616 0.12035 2.17691 65 1.52989 2.06055 1.41157 0.88601 186 u - - ) 1.38629 1.38629 1.38629 1.38629 0.00214 9.67735 6.17946 1.46634 0.26236 0.47966 0.96494 66 1.24208 3.07868 1.40152 0.86995 187 u - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68199 9.68199 1.46634 0.26236 0.01829 4.01063 67 1.55502 2.33932 0.57720 2.03290 188 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68867 9.68867 1.46634 0.26236 1.09861 0.40547 68 1.20813 2.21283 0.79489 1.96451 189 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00006 9.68861 * 1.46634 0.26236 0.00000 * //