INFERNAL1/a [1.1.5 | Sep 2023] NAME S15-Halobacteria ACC RF03143 DESC S15-Halobacteria ribosomal protein leader STATES 202 NODES 48 CLEN 66 W 123 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 03:54:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03143/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 237 EFFN 3.822464 CKSUM 1027755345 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 50.70 NC 48.10 EFP7GF -11.3562 0.71905 ECMLC 0.63287 -6.36286 2.78014 1600000 390974 0.003069 ECMGC 0.42910 -16.94816 -3.95021 1600000 105751 0.003782 ECMLI 0.62698 -4.53230 3.86380 1600000 231942 0.005174 ECMGI 0.46956 -11.63625 -0.53616 1600000 73396 0.005450 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 123 188 -7.569 -7.776 -0.055 -5.180 IL 1 1 2 1 4 1 20 125 191 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 125 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 20 123 189 -8.529 -0.014 -7.183 0.360 -0.801 0.230 -0.044 D 4 2 3 5 3 0 13 121 186 -6.417 -1.930 -0.462 IL 5 5 3 5 3 1 18 124 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 19 122 188 -8.529 -0.014 -7.183 -0.205 -0.178 -0.706 0.710 D 7 5 3 8 3 0 12 120 185 -6.417 -1.472 -0.672 IL 8 8 3 8 3 1 17 123 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 18 121 187 -8.541 -0.014 -7.196 -0.643 -1.680 1.336 -0.936 D 10 8 3 11 3 0 11 119 184 -6.268 -1.781 -0.523 IL 11 11 3 11 3 1 16 122 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 17 120 186 -8.541 -0.014 -7.196 -1.404 -3.193 1.745 -2.640 D 13 11 3 14 3 0 10 118 183 -6.268 -1.781 -0.523 IL 14 14 3 14 3 1 16 121 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 16 119 185 -8.541 -0.014 -7.196 -1.275 -3.102 1.722 -2.552 D 16 14 3 17 3 0 9 117 182 -6.268 -1.781 -0.523 IL 17 17 3 17 3 1 15 120 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 16 118 184 -8.541 -0.014 -7.196 1.283 -1.604 -0.589 -0.802 D 19 17 3 20 3 0 8 116 181 -6.268 -1.781 -0.523 IL 20 20 3 20 3 1 14 119 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 15 117 183 -8.541 -0.014 -7.196 1.651 -1.578 -2.095 -1.785 D 22 20 3 23 3 0 7 115 181 -6.268 -1.498 -0.660 IL 23 23 3 23 3 1 13 118 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 1 14 116 182 -8.548 -0.014 -7.203 -0.307 0.838 -0.628 -0.401 D 25 23 3 26 3 0 6 114 180 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 117 182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 5 1 13 115 181 -7.615 -0.027 -7.431 -7.643 -8.534 0.862 -0.032 -0.990 -0.514 D 28 26 3 29 5 0 5 113 179 -4.959 -0.803 -4.221 -2.596 -2.508 IL 29 29 3 29 5 1 10 115 181 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 158 G C - - MP 30 29 3 34 6 2 13 114 180 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -2.682 -2.590 -3.721 1.268 -4.592 -4.403 0.068 -4.261 -3.971 3.129 -4.313 0.821 -0.195 -3.670 -1.898 -2.674 ML 31 29 3 34 6 1 7 112 178 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 6 112 177 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 3 108 174 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 9 113 179 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 9 113 179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 157 C G - - MP 36 35 6 40 6 2 12 112 178 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -5.376 -5.428 -4.907 -1.573 -3.429 -5.192 3.712 -4.319 -4.988 -1.430 -5.162 -3.462 0.008 -5.354 -0.541 -3.794 ML 37 35 6 40 6 1 6 110 176 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 6 110 176 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 2 107 173 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 8 112 177 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 111 177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 156 A U - - MP 42 41 6 46 6 2 10 110 176 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -4.467 -3.267 -4.509 3.601 -5.802 -6.673 -1.421 -4.585 -4.311 0.376 -4.928 0.364 -1.594 -5.453 -3.314 -3.268 ML 43 41 6 46 6 1 6 109 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 5 108 174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 2 106 172 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 110 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 109 175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 155 C G - - MP 48 47 6 52 4 2 8 108 174 -7.569 -7.776 -0.034 -6.190 -5.549 -5.605 -5.050 -1.754 -3.556 -5.314 3.754 -4.467 -5.148 -1.616 -5.291 -3.645 -0.151 -5.520 -0.889 -3.954 ML 49 47 6 52 4 1 5 107 173 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 3 107 172 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 2 106 171 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 6 108 174 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 6 108 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 54 53 6 56 3 1 7 106 172 -8.907 -0.013 -7.225 0.318 -2.150 1.136 -1.598 D 55 53 6 56 3 0 1 105 170 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 5 107 172 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 154 - A - - MR 57 56 3 59 5 1 6 105 171 -7.615 -0.027 -7.431 -7.643 -8.534 1.240 -0.928 -1.000 -0.706 D 58 56 3 59 5 0 0 103 169 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 3 105 171 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 153 g c - - MP 60 59 3 64 6 2 7 104 170 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -1.760 -1.122 -1.677 1.229 -2.231 -2.962 1.088 -2.529 0.425 1.901 -2.769 0.544 0.940 -2.270 -0.399 -1.389 ML 61 59 3 64 6 1 2 102 168 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 2 102 167 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 98 163 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 103 169 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 103 169 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 152 C G - - MP 66 65 6 70 6 2 7 102 168 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -4.768 -4.768 -4.434 -0.887 -3.055 -4.827 3.470 -3.873 -4.461 -0.716 -4.742 -2.730 1.172 -4.799 -0.317 -3.271 ML 67 65 6 70 6 1 2 100 166 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 100 165 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 96 161 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 3 102 167 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 3 101 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 151 C G - - MP 72 71 6 76 6 2 7 100 166 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -4.673 -4.658 -4.367 -0.773 -3.013 -4.784 3.386 -3.818 -4.385 -0.598 -4.684 -2.603 1.501 -4.717 -0.491 -3.196 ML 73 71 6 76 6 1 2 98 164 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 2 98 163 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 94 160 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 100 165 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 3 99 165 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 150 G C - - MP 78 77 6 82 6 2 6 98 164 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -4.642 -3.084 -4.650 0.525 -5.656 -4.905 -0.843 -5.102 -4.461 3.485 -4.804 0.777 -1.104 -4.443 -2.860 -3.536 ML 79 77 6 82 6 1 1 96 162 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 96 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 92 158 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 98 163 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 97 163 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 149 C G - - MP 84 83 6 88 6 2 6 96 162 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -4.760 -4.780 -4.419 -0.923 -3.036 -4.802 3.446 -3.856 -4.450 -0.765 -4.727 -2.774 0.642 -4.788 0.771 -3.266 ML 85 83 6 88 6 1 1 94 160 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 94 160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 91 157 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 96 161 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 95 161 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 148 A U - - MP 90 89 6 94 6 2 5 94 160 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -3.940 -3.171 -3.929 3.275 -4.014 -4.993 0.268 -4.030 -3.960 1.194 -4.459 -0.791 -0.149 -4.269 -0.616 -2.853 ML 91 89 6 94 6 1 1 93 158 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 92 158 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 90 156 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 94 159 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 93 159 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 147 a u - - MP 96 95 6 100 4 2 3 92 158 -7.569 -7.776 -0.034 -6.190 -2.101 -2.197 -2.268 2.329 -1.325 -3.111 1.317 -2.555 -0.525 1.083 -2.892 -0.652 1.087 -2.409 -0.183 -1.474 ML 97 95 6 100 4 1 1 91 157 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 91 156 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 89 155 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 92 158 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 92 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - A - - - ML 102 101 6 104 3 1 2 90 156 -8.548 -0.014 -7.203 1.371 -0.886 -1.274 -1.125 D 103 101 6 104 3 0 0 88 154 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 91 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 105 104 3 107 3 1 2 89 155 -8.907 -0.013 -7.225 -2.595 -2.408 -3.367 1.827 D 106 104 3 107 3 0 0 88 153 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 90 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 146 - A - - MR 108 107 3 110 5 1 1 88 154 -7.615 -0.027 -7.431 -7.643 -8.534 1.882 -3.538 -3.062 -3.198 D 109 107 3 110 5 0 0 87 152 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 88 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 145 C G - - MP 111 110 3 115 6 2 2 87 153 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -5.852 -5.867 -5.305 -2.036 -3.799 -5.543 3.813 -4.744 -5.431 -1.925 -5.517 -3.871 -0.458 -5.830 -1.572 -4.240 ML 112 110 3 115 6 1 1 86 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 85 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 83 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 87 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 86 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 144 c g - - MP 117 116 6 121 4 2 2 85 151 -7.569 -7.776 -0.034 -6.190 -4.119 -4.135 -3.985 -0.398 -1.982 -4.539 2.713 -3.613 -3.996 -0.259 -4.380 -2.174 1.185 -4.263 2.169 -2.876 ML 118 116 6 121 4 1 1 84 150 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 84 149 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 82 148 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 85 151 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 85 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - G - - - ML 123 122 6 125 3 1 1 83 149 -8.548 -0.014 -7.203 -2.745 -4.109 1.889 -3.477 D 124 122 6 125 3 0 0 81 147 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 84 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - A - - - ML 126 125 3 128 3 1 1 82 148 -8.548 -0.014 -7.203 1.882 -3.538 -3.062 -3.198 D 127 125 3 128 3 0 0 80 146 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 83 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - C - - - ML 129 128 3 131 3 1 1 81 147 -8.548 -0.014 -7.203 -3.135 1.855 -3.930 -2.296 D 130 128 3 131 3 0 0 79 145 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 82 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - u - - - ML 132 131 3 134 3 1 1 80 146 -8.548 -0.014 -7.203 -0.225 -0.773 -0.532 0.901 D 133 131 3 134 3 0 0 78 144 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 81 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - c - - - ML 135 134 3 137 3 1 1 79 145 -3.225 -0.174 -7.225 -0.656 0.999 -1.221 -0.092 D 136 134 3 137 3 0 0 78 143 -5.620 -0.734 -1.403 IL 137 137 3 137 3 1 1 79 145 -2.512 -0.345 -4.751 0.000 0.000 0.000 0.000 [ MATR 33 ] - 143 - G - - MR 138 137 3 140 3 1 1 78 144 -6.243 -0.029 -7.225 -2.745 -4.109 1.889 -3.477 D 139 137 3 140 3 0 0 76 142 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 79 144 -2.000 -0.521 -4.239 0.000 0.000 0.000 0.000 [ MATR 34 ] - 141 - U - - MR 141 140 3 143 3 1 1 77 143 -4.660 -0.068 -7.225 -0.795 -0.380 -1.660 1.226 D 142 140 3 143 3 0 0 75 141 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 77 143 -2.163 -0.455 -4.402 0.000 0.000 0.000 0.000 [ MATR 35 ] - 139 - U - - MR 144 143 3 146 5 1 1 76 142 -6.868 -0.032 -7.431 -7.643 -8.534 -2.595 -2.408 -3.367 1.827 D 145 143 3 146 5 0 0 74 140 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 76 142 -2.428 -0.488 -5.940 -4.107 -5.213 0.000 0.000 0.000 0.000 [ MATP 36 ] 32 137 G C - - MP 147 146 3 151 6 2 2 75 141 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -5.860 -3.645 -6.163 -0.595 -6.775 -5.106 -1.864 -6.416 -4.986 3.821 -5.259 -1.408 -2.228 -5.178 -3.979 -5.024 ML 148 146 3 151 6 1 1 73 139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 73 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 69 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 74 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 74 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 136 C G - - MP 153 152 6 157 6 2 2 73 139 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -4.412 -4.372 -4.200 -0.496 -2.952 -4.701 3.227 -3.718 -4.200 -0.316 -4.550 -2.293 1.615 -4.507 0.266 -3.024 ML 154 152 6 157 6 1 1 71 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 71 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 67 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 72 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 72 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 135 c g - - MP 159 158 6 163 6 2 2 71 137 -9.377 -9.316 -0.026 -8.092 -8.372 -6.955 -3.333 -3.291 -3.399 0.400 -2.449 -4.185 2.964 -2.269 -3.377 0.704 -3.886 -1.291 1.395 -3.577 -0.219 -1.474 ML 160 158 6 163 6 1 1 69 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 69 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 64 130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 70 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 70 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 134 g c - - MP 165 164 6 169 6 2 2 69 135 -9.368 -9.308 -0.128 -7.595 -4.579 -4.845 -3.367 -2.586 -3.347 1.404 -3.475 -4.060 1.444 -3.669 -3.549 2.683 -3.958 -0.083 0.673 -3.341 -0.658 -2.327 ML 166 164 6 169 6 1 1 67 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 67 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 62 128 -9.209 -7.908 -3.705 -4.387 -4.404 -0.282 IL 169 169 5 169 6 1 1 69 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 69 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 36 133 c g - - MP 171 170 6 175 6 2 2 67 133 -9.259 -9.199 -0.110 -6.736 -6.735 -4.280 -2.030 -2.201 -2.301 1.050 -2.120 -3.133 2.027 -2.527 -1.967 1.370 -2.430 -0.123 1.589 -2.435 0.224 -1.457 ML 172 170 6 175 6 1 1 65 131 -6.284 -6.630 -1.262 -1.039 -6.480 -4.009 0.322 -0.249 -0.286 0.122 MR 173 170 6 175 6 1 1 66 131 -7.608 -6.337 -0.836 -6.315 -1.449 -4.529 0.752 -0.835 -0.114 -0.266 D 174 170 6 175 6 0 0 59 124 -9.878 -8.576 -4.373 -5.056 -5.073 -0.171 IL 175 175 5 175 6 1 1 67 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 67 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 37 132 c g - - MP 177 176 6 181 6 2 2 66 131 -9.234 -9.174 -0.094 -7.326 -7.351 -4.405 -2.930 -2.709 -3.018 1.056 -2.455 -3.821 2.223 -3.073 -2.844 1.930 -3.566 -0.633 1.285 -3.131 -0.013 -1.990 ML 178 176 6 181 6 1 1 63 129 -6.361 -6.707 -1.246 -1.038 -6.557 -4.086 0.308 -0.441 -0.101 0.128 MR 179 176 6 181 6 1 1 63 129 -7.097 -5.826 -1.566 -5.804 -0.843 -4.017 0.337 -0.231 -0.375 0.155 D 180 176 6 181 6 0 0 57 122 -10.481 -9.179 -4.976 -5.658 -5.676 -0.110 IL 181 181 5 181 6 1 1 65 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 65 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 38 131 c g - - MP 183 182 6 187 4 2 2 64 129 -2.205 -3.398 -0.579 -5.731 -2.920 -2.661 -3.006 0.946 -2.604 -3.802 2.316 -3.056 -3.038 1.813 -3.250 -0.231 1.294 -3.118 -0.140 -1.970 ML 184 182 6 187 4 1 1 61 126 -3.144 -4.003 -0.569 -2.732 0.257 -0.210 -0.366 0.220 MR 185 182 6 187 4 1 1 61 126 -3.171 -3.956 -1.823 -0.884 0.446 -0.383 -0.314 0.093 D 186 182 6 187 4 0 0 55 120 -6.317 -3.311 -0.558 -2.268 IL 187 187 5 187 4 1 1 67 132 -0.495 -2.236 -3.780 -7.517 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 62 127 -0.406 -2.081 -6.767 0.000 0.000 0.000 0.000 [ MATL 43 ] 73 - g - - - ML 189 188 6 191 3 1 1 16 34 -8.548 -0.014 -7.203 0.151 -0.325 0.225 -0.116 D 190 188 6 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 74 - u - - - ML 192 191 3 194 3 1 1 14 33 -8.548 -0.014 -7.203 -0.278 0.245 -0.938 0.554 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 75 - u - - - ML 195 194 3 197 3 1 1 13 31 -8.548 -0.200 -2.981 -0.496 -0.366 -0.814 0.960 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 76 - u - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.554 -0.308 -0.909 0.985 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME S15-Halobacteria ACC RF03143 DESC S15-Halobacteria ribosomal protein leader LENG 66 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 03:54:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03143/CM NSEQ 237 EFFN 7.684708 CKSUM 1027755345 STATS LOCAL MSV -7.8104 0.71905 STATS LOCAL VITERBI -8.8240 0.71905 STATS LOCAL FORWARD -3.7647 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56586 1.35037 1.12706 1.57039 1.38629 1.38629 1.38629 1.38629 0.02673 4.60255 4.11378 1.46634 0.26236 0.00000 * 1 1.12457 2.05175 1.14453 1.47698 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02039 4.59621 4.59621 1.46634 0.26236 1.28932 0.32222 2 1.62324 1.49591 1.90495 0.84428 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.02039 4.59621 4.59621 1.46634 0.26236 0.80055 0.59617 3 2.07230 2.86088 0.33817 2.26519 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60605 4.60605 1.46634 0.26236 1.09861 0.40547 4 2.64458 4.27824 0.11110 3.89981 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60605 4.60605 1.46634 0.26236 1.09861 0.40547 5 2.52787 4.20081 0.12387 3.83067 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60605 4.60605 1.46634 0.26236 1.09861 0.40547 6 0.38266 2.95587 1.84787 2.22238 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60605 4.60605 1.46634 0.26236 1.09861 0.40547 7 0.15185 2.63788 3.45616 3.27500 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60605 4.60605 1.46634 0.26236 1.09861 0.40547 8 1.76776 0.64019 1.84739 1.93484 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 9 0.68738 1.32683 2.26913 2.05266 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 10 1.84681 2.96937 0.31381 2.80902 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 11 4.33884 0.10588 4.22350 2.62051 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 12 0.15820 4.49989 2.12583 4.14266 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 13 4.49713 0.08022 4.40638 2.92351 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 14 1.14633 3.52154 0.49141 3.19705 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 15 1.57747 2.15123 0.62847 1.93963 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 16 3.86166 0.23614 3.68995 1.80594 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 17 3.79845 0.28473 3.62025 1.61645 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 18 2.64581 3.84098 0.12497 3.68668 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 19 3.94736 0.24796 3.80153 1.72614 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 20 0.25124 3.40539 2.12888 2.65932 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 21 0.74925 1.83722 1.57538 1.82579 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 22 0.31598 2.05390 2.56239 2.72466 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 23 4.05820 3.81980 4.60856 0.05043 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 24 4.86534 0.04577 4.79256 3.54965 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 25 3.60171 0.77640 3.41019 0.73475 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 26 4.07993 5.10759 0.03367 4.58989 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 27 0.03298 4.73012 4.35224 4.53375 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 28 4.47254 0.04146 4.89630 3.82933 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 29 1.64157 2.08010 1.74794 0.67870 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 30 2.10874 0.54300 2.39617 1.57725 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.15949 1.98425 4.61170 0.13874 2.04372 1.09861 0.40547 31 3.60347 4.63055 0.04807 4.60986 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 32 3.56516 0.38583 3.35658 1.35881 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 33 2.60554 0.50629 2.22258 1.53674 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.03353 4.61170 3.77062 1.46634 0.26236 1.09861 0.40547 34 1.67576 1.76725 0.65394 2.10341 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.20262 4.59851 1.75246 1.46634 0.26236 1.46300 0.26337 35 1.81163 1.21804 1.41494 1.21112 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.17905 4.42025 1.88451 1.46634 0.26236 0.73720 0.65096 36 1.94245 1.06225 1.22242 1.53037 37 c - - < 1.38629 1.38629 1.38629 1.38629 0.15106 4.38599 2.05765 1.46634 0.26236 2.32166 0.10326 37 2.06453 0.96716 1.26686 1.55472 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.34387 1.28318 4.28147 1.51781 0.24742 0.06601 2.75075 38 1.31581 1.58325 1.14129 1.57488 73 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 39 1.70430 1.12478 2.13447 0.98064 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 40 1.93155 1.66955 1.99471 0.63357 75 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15609 4.61170 2.00558 1.46634 0.26236 1.09861 0.40547 41 2.01960 1.61985 2.09993 0.60349 76 U - - _ 1.38629 1.38629 1.38629 1.38629 0.64683 1.14098 1.85284 1.81598 0.17755 2.34903 0.10033 42 1.81510 1.45670 0.85677 1.71679 131 g - - > 1.38629 1.38629 1.38629 1.38629 0.07175 4.32781 2.88161 1.46634 0.26236 1.13777 0.38645 43 1.80957 1.32732 0.93029 1.73359 132 g - - > 1.38629 1.38629 1.38629 1.38629 0.02949 4.38784 4.09633 1.46634 0.26236 0.61979 0.77231 44 1.38437 1.72871 1.02306 1.54875 133 g - - > 1.38629 1.38629 1.38629 1.38629 0.02207 4.51749 4.51749 1.46634 0.26236 0.32216 1.28946 45 2.46485 0.75246 1.59169 1.42631 134 c - - > 1.38629 1.38629 1.38629 1.38629 0.02034 4.59851 4.59851 1.46634 0.26236 0.62191 0.76985 46 1.82507 2.37744 0.46539 2.13610 135 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 47 1.66934 3.52357 0.29285 3.32416 136 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 48 4.74433 0.05868 4.53914 3.28047 137 C - - > 1.38629 1.38629 1.38629 1.38629 0.02458 4.24409 4.61170 1.06994 0.42012 1.09861 0.40547 49 4.05820 3.81980 4.60856 0.05043 139 U - - - 1.38629 1.38629 1.38629 1.38629 0.06771 2.89080 4.61170 0.32598 1.27949 1.09861 0.40547 50 2.24345 1.69291 2.93292 0.42055 141 U - - - 1.38629 1.38629 1.38629 1.38629 0.03397 3.75222 4.61170 0.70280 0.68359 1.09861 0.40547 51 4.07993 5.10759 0.03367 4.58989 143 G - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 52 2.05497 3.57478 0.21162 3.36357 144 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 53 3.83858 4.96952 0.03828 4.70061 145 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 54 0.03298 4.73012 4.35224 4.53375 146 A - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 55 1.55925 2.11371 1.75457 0.70131 147 u - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 56 3.58740 2.33191 2.58718 0.22316 148 U - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 57 2.70507 3.95000 0.11733 3.70531 149 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 58 3.89905 0.27148 3.66489 1.65086 150 C - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 59 1.76398 3.77813 0.25205 3.55538 151 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 60 2.05752 3.84759 0.19347 3.61925 152 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 61 1.39808 1.13057 1.87531 1.28456 153 c - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 62 0.40626 2.14408 2.27314 2.17422 154 A - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 63 3.40298 4.54534 0.05942 4.28307 155 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 64 4.30911 3.10426 4.26122 0.07516 156 U - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 65 3.21375 4.35888 0.07216 4.09744 157 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61170 4.61170 1.46634 0.26236 1.09861 0.40547 66 2.91234 0.49228 2.77321 1.30210 158 C - - > 1.38629 1.38629 1.38629 1.38629 0.01009 4.60172 * 1.46634 0.26236 0.00000 * //