INFERNAL1/a [1.1.5 | Sep 2023] NAME L2-Alphaproteobacteria ACC RF03142 DESC L2-Alphaproteobacteria ribosomal protein leader STATES 207 NODES 58 CLEN 66 W 152 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 22:48:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03142/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 452 EFFN 9.355743 CKSUM 829956238 NULL 0.000 0.000 0.000 0.000 GA 37.80 TC 37.80 NC 37.30 EFP7GF -14.2402 0.71891 ECMLC 0.78987 -7.77502 0.46584 1600000 805525 0.001490 ECMGC 0.40637 -19.35731 -5.99769 1600000 91165 0.004388 ECMLI 0.65609 -8.47917 0.98551 1600000 597028 0.002010 ECMGI 0.43768 -12.90141 -1.22706 1600000 66246 0.006038 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 152 248 -8.419 -9.664 -0.029 -5.990 IL 1 1 2 1 4 1 23 153 250 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 153 250 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 256 - A - - MR 3 2 3 5 3 1 23 152 249 -9.854 -0.050 -4.921 1.963 -5.175 -4.617 -4.878 D 4 2 3 5 3 0 19 150 247 -6.434 -1.611 -0.597 IR 5 5 3 5 3 1 23 152 249 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 255 - A - - MR 6 5 3 8 3 1 23 151 248 -6.762 -0.019 -8.128 1.580 -2.197 -1.013 -1.748 D 7 5 3 8 3 0 18 149 246 -7.178 -0.741 -1.341 IR 8 8 3 8 3 1 22 151 248 -2.026 -0.509 -4.265 0.000 0.000 0.000 0.000 [ MATR 3 ] - 253 - A - - MR 9 8 3 11 3 1 22 150 247 -9.854 -0.007 -8.171 1.550 -1.560 -1.845 -1.138 D 10 8 3 11 3 0 17 148 244 -6.434 -1.611 -0.597 IR 11 11 3 11 3 1 21 150 247 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 252 - G - - MR 12 11 3 14 3 1 21 149 246 -9.854 -0.007 -8.171 -2.944 -3.008 1.865 -3.287 D 13 11 3 14 3 0 16 147 243 -6.434 -1.611 -0.597 IR 14 14 3 14 3 1 20 149 246 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 251 - A - - MR 15 14 3 17 3 1 20 148 245 -9.854 -0.034 -5.499 1.928 -4.523 -3.300 -4.320 D 16 14 3 17 3 0 16 146 243 -6.434 -1.611 -0.597 IR 17 17 3 17 3 1 20 148 245 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 250 - C - - MR 18 17 3 20 3 1 20 147 244 -9.827 -0.007 -8.144 -3.082 1.884 -3.887 -3.012 D 19 17 3 20 3 0 15 145 242 -6.946 -0.865 -1.176 IR 20 20 3 20 3 1 18 147 244 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 249 - A - - MR 21 20 3 23 3 1 19 146 243 -9.856 -0.007 -8.173 1.898 -3.940 -3.851 -2.849 D 22 20 3 23 3 0 14 144 240 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 18 146 243 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 248 - G - - MR 24 23 3 26 3 1 18 145 242 -9.856 -0.007 -8.173 -4.180 -5.703 1.961 -4.913 D 25 23 3 26 3 0 13 143 239 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 17 145 242 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 247 - A - - MR 27 26 3 29 3 1 17 144 241 -7.176 -0.025 -6.593 1.963 -5.178 -4.620 -4.881 D 28 26 3 29 3 0 12 142 238 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 16 144 241 -2.001 -0.520 -4.240 0.000 0.000 0.000 0.000 [ MATR 10 ] - 245 - A - - MR 30 29 3 32 3 1 16 143 240 -9.846 -0.007 -8.163 1.962 -5.163 -4.606 -4.867 D 31 29 3 32 3 0 12 141 237 -6.607 -1.217 -0.837 IR 32 32 3 32 3 1 15 143 240 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 244 - G - - MR 33 32 3 35 3 1 15 142 239 -9.856 -0.007 -8.173 -3.467 -5.413 1.944 -4.694 D 34 32 3 35 3 0 11 140 236 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 14 142 239 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 243 - G - - MR 36 35 3 38 3 1 14 141 238 -9.856 -0.007 -8.173 -4.180 -5.703 1.961 -4.913 D 37 35 3 38 3 0 10 139 235 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 141 238 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 242 - C - - MR 39 38 3 41 3 1 13 140 237 -9.856 -0.053 -4.847 -4.516 1.935 -5.082 -3.271 D 40 38 3 41 3 0 10 138 234 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 140 237 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 241 - A - - MR 42 41 3 44 3 1 12 139 236 -9.810 -0.007 -8.127 1.922 -4.425 -3.187 -4.223 D 43 41 3 44 3 0 9 136 233 -7.187 -2.365 -0.324 IR 44 44 3 44 3 1 12 139 236 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 240 - A - - MR 45 44 3 47 3 1 11 138 235 -9.810 -0.173 -3.156 1.713 -2.543 -1.439 -2.460 D 46 44 3 47 3 0 9 136 232 -7.187 -2.365 -0.324 IR 47 47 3 47 3 1 12 139 235 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 239 - A - - MR 48 47 3 50 3 1 11 137 234 -2.152 -0.513 -3.748 1.588 -1.982 -2.471 -0.834 D 49 47 3 50 3 0 9 135 232 -8.467 -0.771 -1.283 IR 50 50 3 50 3 1 12 137 234 -3.403 -0.176 -5.642 0.000 0.000 0.000 0.000 [ MATR 17 ] - 237 - C - - MR 51 50 3 53 3 1 11 136 233 -9.693 -0.010 -7.497 -2.232 1.808 -3.635 -2.283 D 52 50 3 53 3 0 7 133 230 -8.205 -2.924 -0.209 IR 53 53 3 53 3 1 11 137 233 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 236 - G - - MR 54 53 3 56 3 1 10 135 232 -9.699 -0.085 -4.153 -1.395 -2.624 1.710 -2.421 D 55 53 3 56 3 0 7 133 229 -8.167 -3.344 -0.155 IR 56 56 3 56 3 1 10 136 232 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 235 - A - - MR 57 56 3 59 3 1 9 134 231 -1.722 -0.747 -3.306 1.421 -1.237 -2.152 -0.571 D 58 56 3 59 3 0 7 133 229 -5.303 -1.045 -1.029 IR 59 59 3 59 3 1 9 134 231 -3.696 -0.245 -3.660 0.000 0.000 0.000 0.000 [ MATR 20 ] - 233 - u - - MR 60 59 3 62 3 1 8 133 230 -1.701 -0.921 -2.604 0.411 -0.271 -1.116 0.465 D 61 59 3 62 3 0 6 132 228 -2.150 -2.373 -0.782 IR 62 62 3 62 3 1 8 133 230 -2.516 -0.323 -5.279 0.000 0.000 0.000 0.000 [ MATR 21 ] - 230 - C - - MR 63 62 3 65 3 1 7 132 229 -2.656 -0.517 -2.812 -1.395 1.317 -2.672 -0.042 D 64 62 3 65 3 0 6 130 227 -6.839 -1.127 -0.907 IR 65 65 3 65 3 1 8 132 229 -2.694 -0.286 -5.305 0.000 0.000 0.000 0.000 [ MATR 22 ] - 227 - G - - MR 66 65 3 68 2 1 6 131 228 -9.695 -0.002 0.084 -1.843 1.154 -1.195 D 67 65 3 68 2 0 5 130 227 -7.147 -0.010 IR 68 68 3 68 2 1 7 131 228 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 23 ] - - - - - - B 69 68 3 70 126 0 5 130 227 [ BEGL 24 ] - - - - - - S 70 69 1 71 4 0 0 78 155 -0.021 -7.880 -7.287 -7.927 [ MATP 25 ] 1 58 g u - - MP 71 70 1 75 6 2 2 78 155 -9.959 -8.388 -0.014 -8.675 -8.955 -9.350 -3.895 -2.068 -4.629 0.622 -5.402 -4.126 -0.404 -2.668 -3.681 1.882 -3.679 2.969 -0.794 -4.220 -2.618 -0.612 ML 72 70 1 75 6 1 1 76 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 1 75 6 1 1 76 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 1 75 6 0 0 72 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 77 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 77 154 -2.438 -0.484 -5.949 -4.117 -5.223 0.000 0.000 0.000 0.000 [ MATP 26 ] 2 56 G C - - MP 77 76 6 81 6 2 2 76 153 -9.959 -9.899 -0.012 -8.675 -8.955 -9.350 -4.425 -3.060 -4.263 0.646 -5.233 -4.808 0.486 -4.889 -4.617 3.424 -4.877 -0.381 -0.513 -4.110 -1.858 -3.216 ML 78 76 6 81 6 1 1 74 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 74 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 71 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 75 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 75 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 3 55 g c - - MP 83 82 6 87 6 2 2 74 151 -9.959 -9.899 -0.012 -8.675 -8.955 -9.350 -4.179 -3.209 -4.093 0.773 -4.173 -4.766 1.942 -4.368 -3.066 2.936 -4.685 -0.895 0.075 -4.062 -1.001 -3.000 ML 84 82 6 87 6 1 1 73 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 72 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 70 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 73 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 73 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 4 54 c g - - MP 89 88 6 93 4 2 2 72 149 -6.104 -4.942 -0.213 -3.474 -3.945 -3.396 -3.511 0.556 -3.541 -4.721 2.449 -3.972 -3.722 2.432 -4.004 -0.956 0.927 -4.020 -1.057 -2.819 ML 90 88 6 93 4 1 1 71 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 71 148 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 92 88 6 93 4 0 0 70 146 -4.568 -4.250 -2.265 -0.520 IL 93 93 5 93 4 1 1 72 149 -1.903 -2.586 -0.899 -5.072 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 72 149 -1.139 -1.084 -3.756 0.000 0.000 0.000 0.000 [ MATL 29 ] 6 - A - - - ML 95 94 6 97 5 1 1 70 147 -8.403 -0.016 -8.218 -8.430 -9.322 1.787 -2.572 -2.192 -2.637 D 96 94 6 97 5 0 0 69 146 -6.209 -0.306 -5.470 -3.845 -3.551 IL 97 97 3 97 5 1 1 70 147 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 7 49 C G - - MP 98 97 3 102 6 2 2 69 146 -9.958 -9.897 -0.046 -8.673 -8.953 -5.334 -5.328 -5.218 -2.566 -1.215 -3.813 -5.632 3.598 -4.589 -5.088 -0.215 -5.438 -3.009 0.270 -5.420 -0.379 -3.870 ML 99 97 3 102 6 1 1 67 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 3 102 6 1 1 67 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 3 102 6 0 0 68 145 -9.100 -7.799 -3.596 -4.278 -4.295 -0.307 IL 102 102 5 102 6 1 1 68 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 68 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 8 48 C G - - MP 104 103 6 108 6 2 2 67 144 -9.924 -9.863 -0.065 -8.639 -8.919 -4.753 -5.740 -5.664 -5.422 -1.165 -1.543 -5.844 3.710 -4.883 -5.446 -0.582 -5.704 -3.488 -0.359 -5.795 -1.452 -4.225 ML 105 103 6 108 6 1 1 65 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 65 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 68 145 -9.853 -8.551 -4.348 -5.030 -5.048 -0.174 IL 108 108 5 108 6 1 1 66 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 66 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 9 47 U G - - MP 110 109 6 114 4 2 2 65 142 -5.188 -2.916 -0.264 -7.070 -5.603 -5.590 -5.234 -0.554 -3.842 -5.605 1.215 -4.660 -5.267 -0.765 -3.820 -3.563 0.017 -5.631 3.451 -4.087 ML 111 109 6 114 4 1 1 63 140 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 4 1 1 62 139 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 113 109 6 114 4 0 0 69 145 -5.994 -0.789 -2.777 -1.946 IL 114 114 5 114 4 1 1 69 146 -1.995 -1.413 -1.524 -5.262 0.000 0.000 0.000 0.000 IR 115 115 6 115 3 1 1 71 148 -0.346 -2.270 -7.451 0.000 0.000 0.000 0.000 [ MATL 33 ] 12 - u - - - ML 116 115 6 118 3 1 1 14 32 -9.529 -0.007 -8.183 0.174 -0.838 -0.839 0.810 D 117 115 6 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 13 - C - - - ML 119 118 3 121 3 1 1 12 30 -9.529 -0.007 -8.183 -0.985 1.369 -1.927 -0.623 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 14 - G - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 -1.032 -1.507 1.497 -1.569 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 126 69 1 127 3 0 0 109 206 -9.529 -0.032 -5.601 IL 127 127 2 127 3 1 1 111 207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 59 - u - - - ML 128 127 2 130 3 1 1 109 206 -9.504 -0.018 -6.513 0.548 -0.929 -1.140 0.641 D 129 127 2 130 3 0 0 106 202 -6.730 -2.243 -0.360 IL 130 130 3 130 3 1 1 110 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 60 - u - - - ML 131 130 3 133 3 1 1 108 205 -9.493 -0.007 -8.147 -0.157 -0.282 -1.500 0.946 D 132 130 3 133 3 0 0 105 201 -6.914 -2.427 -0.312 IL 133 133 3 133 3 1 1 109 205 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 61 - A - - - ML 134 133 3 136 3 1 1 107 204 -9.493 -0.011 -7.365 1.499 -0.940 -2.197 -1.203 D 135 133 3 136 3 0 0 104 200 -6.914 -2.427 -0.312 IL 136 136 3 136 3 1 1 108 204 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 62 - A - - - ML 137 136 3 139 3 1 1 106 203 -9.490 -0.007 -8.144 1.015 0.297 -1.991 -1.005 D 138 136 3 139 3 0 0 103 199 -6.971 -2.484 -0.298 IL 139 139 3 139 3 1 1 107 203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 63 - C - - - ML 140 139 3 142 3 1 1 105 202 -9.490 -0.029 -5.739 -0.241 1.146 -1.748 -0.638 D 141 139 3 142 3 0 0 102 199 -6.971 -2.484 -0.298 IL 142 142 3 142 3 1 1 106 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 64 - a - - - ML 143 142 3 145 3 1 1 105 201 -9.467 -0.076 -4.316 0.702 0.307 -1.430 -0.387 D 144 142 3 145 3 0 0 101 198 -7.273 -2.786 -0.237 IL 145 145 3 145 3 1 1 105 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 65 - u - - - ML 146 145 3 148 3 1 1 104 200 -9.399 -0.115 -3.739 0.363 -0.409 -1.261 0.626 D 147 145 3 148 3 0 0 101 197 -7.924 -3.437 -0.146 IL 148 148 3 148 3 1 1 104 201 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 66 - a - - - ML 149 148 3 151 5 1 1 103 199 -1.614 -0.592 -8.122 -8.334 -8.365 0.864 -0.344 -1.017 -0.156 D 150 148 3 151 5 0 0 100 197 -6.695 -0.483 -5.400 -4.147 -2.360 IL 151 151 3 151 5 1 1 103 199 -1.526 -0.732 -6.246 -8.079 -4.889 0.000 0.000 0.000 0.000 [ MATP 46 ] 73 226 G C - - MP 152 151 3 156 6 2 2 101 198 -9.908 -9.847 -0.042 -5.437 -8.903 -9.298 -3.645 -2.309 -3.832 0.906 -4.569 -4.478 0.625 -3.189 -3.653 3.198 -4.500 -0.144 0.283 -2.740 -1.624 -2.841 ML 153 151 3 156 6 1 1 99 196 -6.288 -6.634 -1.256 -1.043 -6.484 -4.013 0.317 -0.235 -0.295 0.124 MR 154 151 3 156 6 1 1 99 195 -7.017 -5.746 -1.566 -5.724 -0.858 -3.938 0.394 -0.489 -0.001 -0.039 D 155 151 3 156 6 0 0 92 189 -10.055 -8.753 -3.875 -5.232 -5.250 -0.191 IL 156 156 5 156 6 1 1 100 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 100 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 74 225 g c - - MP 158 157 6 162 6 2 2 99 196 -9.884 -9.823 -0.012 -8.599 -8.879 -9.274 -2.812 -2.416 -2.925 0.813 -2.758 -2.460 1.601 -2.920 -2.868 2.603 -3.148 0.570 0.488 -2.996 -0.518 -2.000 ML 159 157 6 162 6 1 1 97 194 -6.811 -7.158 -0.748 -1.566 -7.007 -4.537 0.417 -0.276 -0.428 0.132 MR 160 157 6 162 6 1 1 97 193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 90 187 -10.018 -8.716 -4.513 -5.195 -5.213 -0.154 IL 162 162 5 162 6 1 1 98 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 98 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 75 224 c g - - MP 164 163 6 168 6 2 2 97 194 -9.913 -9.853 -0.014 -8.629 -8.233 -9.304 -2.208 -1.827 -2.208 1.180 -2.129 -3.121 2.243 -2.425 -2.340 1.362 -2.893 0.252 1.091 -2.530 0.044 -1.613 ML 165 163 6 168 6 1 1 95 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 95 191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 89 186 -10.018 -8.716 -4.513 -5.195 -5.213 -0.154 IL 168 168 5 168 6 1 1 96 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 96 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 76 223 g c - - MP 170 169 6 174 6 2 2 95 192 -9.912 -6.655 -0.035 -7.465 -7.390 -9.302 -3.318 -2.492 -3.361 1.275 -3.159 -4.103 1.233 -3.765 -3.115 2.758 -3.351 0.256 0.601 -3.381 -0.636 -2.450 ML 171 169 6 174 6 1 1 93 189 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 92 189 -7.023 -5.752 -1.661 -5.731 -0.801 -3.944 0.390 -0.499 0.022 -0.048 D 173 169 6 174 6 0 0 88 185 -10.018 -8.716 -4.513 -5.195 -5.213 -0.154 IL 174 174 5 174 6 1 1 94 191 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 94 191 -2.535 -0.447 -6.047 -4.214 -5.320 0.000 0.000 0.000 0.000 [ MATP 50 ] 77 221 g c - - MP 176 175 6 180 6 2 2 93 190 -2.898 -6.937 -0.293 -8.617 -8.897 -4.757 -2.047 -1.961 -2.291 1.163 -2.088 -2.474 1.695 -2.751 -2.333 2.182 -2.367 0.413 0.811 -2.438 -0.457 -1.625 ML 177 175 6 180 6 1 1 91 187 -4.134 -6.697 -1.326 -1.106 -6.547 -4.077 0.302 -0.207 -0.247 0.081 MR 178 175 6 180 6 1 1 90 186 -7.130 -4.644 -1.455 -5.837 -0.971 -4.050 0.559 -0.416 -0.349 -0.012 D 179 175 6 180 6 0 0 87 184 -2.441 -8.716 -4.513 -5.195 -5.213 -0.483 IL 180 180 5 180 6 1 1 94 190 -0.449 -4.770 -3.547 -8.140 -8.916 -2.838 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 93 189 -1.274 -0.913 -6.815 -4.982 -6.088 0.000 0.000 0.000 0.000 [ MATP 51 ] 89 197 g c - - MP 182 181 6 186 6 2 2 91 188 -9.724 -9.664 -0.192 -7.256 -8.720 -3.140 -3.285 -2.727 -2.727 1.256 -3.419 -4.070 1.589 -3.657 -3.494 2.559 -3.676 0.240 0.922 -3.351 -0.893 -2.374 ML 183 181 6 186 6 1 1 88 184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 86 183 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 81 178 -11.532 -10.231 -6.028 -6.710 -6.727 -0.052 IL 186 186 5 186 6 1 1 90 187 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 90 187 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 90 196 c g - - MP 188 187 6 192 4 2 2 90 186 -0.823 -3.965 -1.474 -6.521 -2.271 -2.165 -1.981 0.913 -1.830 -3.289 2.234 -2.558 -2.487 1.517 -2.908 -0.679 1.512 -2.429 0.015 -1.605 ML 189 187 6 192 4 1 1 82 178 -3.026 -4.018 -0.585 -2.748 0.413 -0.270 -0.333 0.064 MR 190 187 6 192 4 1 1 78 175 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 191 187 6 192 4 0 0 81 177 -7.569 -2.246 -1.715 -1.061 IL 192 192 5 192 4 1 1 90 187 -1.105 -1.038 -4.480 -8.217 0.000 0.000 0.000 0.000 IR 193 193 6 193 3 1 1 89 185 -0.275 -2.589 -7.055 0.000 0.000 0.000 0.000 [ MATL 53 ] 117 - a - - - ML 194 193 6 196 3 1 1 15 34 -9.244 -0.022 -6.184 0.489 -0.638 0.038 -0.108 D 195 193 6 196 3 0 0 14 32 -8.734 -4.247 -0.082 IL 196 196 3 196 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 118 - a - - - ML 197 196 3 199 3 1 1 14 32 -9.231 -0.032 -5.630 0.406 -0.075 -0.788 0.198 D 198 196 3 199 3 0 0 13 31 -8.786 -4.086 -0.091 IL 199 199 3 199 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 119 - a - - - ML 200 199 3 202 3 1 1 12 31 -9.211 -0.211 -2.894 0.791 -0.294 -0.966 -0.086 D 201 199 3 202 3 0 0 11 30 -8.856 -4.369 -0.075 IL 202 202 3 202 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 120 - a - - - ML 203 202 3 205 2 1 1 1 1 * 0.000 0.522 -0.400 -0.405 0.072 D 204 202 3 205 2 0 0 0 0 * 0.000 IL 205 205 3 205 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 206 205 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME L2-Alphaproteobacteria ACC RF03142 DESC L2-Alphaproteobacteria ribosomal protein leader LENG 66 MAXL 188 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 22:48:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03142/CM NSEQ 452 EFFN 28.729340 CKSUM 829956238 STATS LOCAL MSV -7.8834 0.71891 STATS LOCAL VITERBI -9.0149 0.71891 STATS LOCAL FORWARD -2.9919 0.71891 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23667 1.34939 1.22084 1.86260 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 0.00000 * 1 2.77129 3.68499 0.17111 2.66505 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 2 2.74325 2.45009 0.21719 3.11057 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 3 2.51590 1.25945 0.54762 2.86340 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 4 2.67616 0.89040 0.88468 2.22713 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.12697 4.13275 2.27109 0.33910 1.24623 1.09861 0.40547 5 0.09784 3.48889 3.19607 3.82828 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.00668 5.70509 5.70509 1.46634 0.26236 0.07572 2.61829 6 3.96849 0.14688 3.22422 2.55220 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04573 5.80871 3.17724 1.46634 0.26236 1.29703 0.31930 7 3.95362 0.09150 3.27960 3.48645 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.06858 5.76924 2.76204 1.46634 0.26236 2.80654 0.06232 8 3.34550 2.30528 3.49568 0.18068 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03433 3.49251 5.70732 0.25854 1.47919 0.05751 2.88433 9 1.27664 2.15910 2.08668 0.73085 12 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 10 2.25163 0.32693 2.92584 2.12011 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 11 2.36424 2.48888 0.26988 2.82163 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.22020 1.69320 4.28967 2.01681 0.14281 1.09861 0.40547 12 3.36709 3.65872 0.10231 3.29690 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 5.79991 3.40423 1.46634 0.26236 1.88356 0.16493 13 3.06987 3.30169 0.11026 3.85601 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.00626 5.76924 5.76924 1.46634 0.26236 0.17507 1.82881 14 3.26919 3.24518 0.09025 4.67825 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03996 3.31960 5.80871 0.99211 0.46330 0.79117 0.60388 15 2.36319 0.93770 0.84955 2.44478 54 g - - > 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 16 3.27173 0.58270 1.17728 2.34804 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 17 3.52647 0.25567 2.30318 2.34078 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.00926 5.08040 5.81068 0.78552 0.60859 1.09861 0.40547 18 4.03265 1.67022 4.09361 0.25181 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02554 5.81068 3.80651 1.46634 0.26236 1.09861 0.40547 19 0.93925 2.26748 2.45209 0.86895 59 u - - - 1.38629 1.38629 1.38629 1.38629 0.01458 5.79126 4.47258 1.46634 0.26236 2.24283 0.11223 20 1.56119 1.59723 2.81908 0.63866 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.00618 5.78287 5.78287 1.46634 0.26236 2.49802 0.08583 21 0.26109 2.06658 3.61449 2.57388 61 A - - - 1.38629 1.38629 1.38629 1.38629 0.00906 5.78287 5.12695 1.46634 0.26236 2.49802 0.08583 22 0.59115 1.04890 3.56229 2.69400 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.00620 5.78001 5.78001 1.46634 0.26236 2.57149 0.07950 23 1.59257 0.45334 2.92114 2.23282 63 C - - - 1.38629 1.38629 1.38629 1.38629 0.02353 5.78001 3.90389 1.46634 0.26236 2.57149 0.07950 24 0.82117 1.04817 2.77190 1.91757 64 a - - - 1.38629 1.38629 1.38629 1.38629 0.06056 5.76278 2.88918 1.46634 0.26236 2.92388 0.05522 25 1.09313 1.71809 2.61548 0.88602 65 u - - - 1.38629 1.38629 1.38629 1.38629 0.09127 5.70888 2.47802 1.46634 0.26236 3.56428 0.02873 26 0.68246 1.60748 2.30272 1.63861 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.47458 0.98726 5.24803 0.53242 0.88475 0.26847 1.44625 27 2.35617 2.31985 0.34026 2.35030 73 G - - < 1.38629 1.38629 1.38629 1.38629 0.02640 5.77254 3.77464 1.46634 0.26236 1.83317 0.17424 28 2.36632 1.45832 0.55860 2.28735 74 G - - < 1.38629 1.38629 1.38629 1.38629 0.00634 5.75719 5.75719 1.46634 0.26236 3.01505 0.05029 29 1.74412 0.97735 1.31631 1.71052 75 c - - < 1.38629 1.38629 1.38629 1.38629 0.00847 5.75719 5.24498 1.46634 0.26236 3.01505 0.05029 30 1.86342 1.88565 0.55565 2.12501 76 G - - < 1.38629 1.38629 1.38629 1.38629 0.01302 5.75507 4.62884 1.46634 0.26236 1.03072 0.44122 31 1.84330 1.36185 0.78927 2.02996 77 g - - < 1.38629 1.38629 1.38629 1.38629 0.37000 1.40328 2.75706 1.35239 0.29925 1.48868 0.25576 32 1.84787 1.58071 0.68785 2.01032 89 G - - < 1.38629 1.38629 1.38629 1.38629 0.43890 5.71585 1.04423 1.46634 0.26236 3.50267 0.03058 33 1.96800 0.99822 1.41209 1.39393 90 c - - < 1.38629 1.38629 1.38629 1.38629 1.07397 0.42573 5.28711 0.64840 0.73999 0.61188 0.78161 34 0.99324 1.90532 1.27360 1.60432 117 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03829 5.60652 3.38462 1.46634 0.26236 4.16900 0.01559 35 1.06344 1.37640 2.05880 1.29229 118 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 5.57584 3.80879 1.46634 0.26236 3.77421 0.02322 36 0.73647 1.56391 2.25721 1.57387 119 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04897 5.55988 3.12483 1.46634 0.26236 1.75933 0.18893 37 0.95874 1.67563 1.66985 1.42230 120 a - - _ 1.38629 1.38629 1.38629 1.38629 1.22776 0.60111 1.83978 2.01857 0.14254 2.07405 0.13430 38 1.59799 1.49212 0.86982 1.87227 196 g - - > 1.38629 1.38629 1.38629 1.38629 0.08884 5.43603 2.51763 1.46634 0.26236 1.00205 0.45748 39 2.19778 0.85976 1.45174 1.46308 197 c - - > 1.38629 1.38629 1.38629 1.38629 0.07347 2.78842 4.67626 1.14173 0.38459 0.25928 1.47668 40 2.18470 1.00990 1.27462 1.41183 221 c - - > 1.38629 1.38629 1.38629 1.38629 0.02167 4.00290 5.75186 0.31768 1.30136 2.10769 0.12956 41 2.43683 0.70520 1.66504 1.47242 223 c - - > 1.38629 1.38629 1.38629 1.38629 0.00634 5.75719 5.75719 1.46634 0.26236 3.01505 0.05029 42 2.04846 1.64867 0.84708 1.38591 224 g - - > 1.38629 1.38629 1.38629 1.38629 0.04197 5.75719 3.27178 1.46634 0.26236 3.01505 0.05029 43 2.75883 0.72918 1.37376 1.60357 225 c - - > 1.38629 1.38629 1.38629 1.38629 0.01166 5.72179 4.78875 1.46634 0.26236 0.96128 0.48192 44 2.58270 0.38154 2.24400 1.99814 226 C - - > 1.38629 1.38629 1.38629 1.38629 0.25607 5.75230 1.50175 1.46634 0.26236 2.15493 0.12320 45 1.34477 3.20042 0.46071 2.69096 227 G - - : 1.38629 1.38629 1.38629 1.38629 0.44990 1.66076 1.75844 0.10598 2.29705 0.75972 0.63073 46 2.80002 0.36086 4.17468 1.48396 230 C - - : 1.38629 1.38629 1.38629 1.38629 0.56909 0.93171 3.21682 0.19378 1.73637 0.43550 1.04113 47 1.05161 1.58060 2.45233 1.02532 233 u - - : 1.38629 1.38629 1.38629 1.38629 0.56200 1.18364 2.08932 0.02199 3.82806 0.75712 0.63302 48 0.28818 2.47518 3.93514 1.91950 235 A - - : 1.38629 1.38629 1.38629 1.38629 0.01328 5.62817 4.64610 1.46634 0.26236 1.12885 0.39068 49 2.57408 3.47867 0.14564 3.55922 236 G - - : 1.38629 1.38629 1.38629 1.38629 0.01384 5.68516 4.57063 1.46634 0.26236 3.29737 0.03768 50 3.09030 0.07909 4.50711 3.93585 237 C - - : 1.38629 1.38629 1.38629 1.38629 0.47406 1.36338 2.10589 0.02648 3.64472 0.59137 0.80647 51 0.20289 3.29183 4.14902 2.03512 239 A - - : 1.38629 1.38629 1.38629 1.38629 0.00713 5.64048 5.64048 1.46634 0.26236 0.29165 1.37449 52 0.14380 3.59187 2.48939 3.75369 240 A - - : 1.38629 1.38629 1.38629 1.38629 0.00623 5.77415 5.77415 1.46634 0.26236 2.70646 0.06911 53 0.02633 5.67809 3.99341 5.48955 241 A - - : 1.38629 1.38629 1.38629 1.38629 0.00623 5.77415 5.77415 1.46634 0.26236 0.14335 2.01332 54 5.50751 0.02171 5.78239 4.24486 242 C - - : 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 55 5.31932 6.51491 0.00933 5.84088 243 G - - : 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 56 4.25408 6.38823 0.01924 5.75527 244 G - - : 1.38629 1.38629 1.38629 1.38629 0.01400 5.81068 4.51858 1.46634 0.26236 1.09861 0.40547 57 0.00754 6.27763 5.81528 5.93309 245 A - - : 1.38629 1.38629 1.38629 1.38629 0.01287 4.62881 5.80274 0.53388 0.88267 0.43786 1.03681 58 0.00748 6.28662 5.82361 5.94101 247 A - - : 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 59 5.31932 6.51491 0.00933 5.84088 248 G - - : 1.38629 1.38629 1.38629 1.38629 0.00601 5.81068 5.81068 1.46634 0.26236 1.09861 0.40547 60 0.04042 5.24422 5.23382 3.54031 249 A - - : 1.38629 1.38629 1.38629 1.38629 0.02777 5.80919 3.71376 1.46634 0.26236 1.09861 0.40547 61 3.81473 0.04447 4.47358 4.60043 250 C - - : 1.38629 1.38629 1.38629 1.38629 0.00615 5.78757 5.78757 1.46634 0.26236 0.21997 1.62225 62 0.02417 5.75307 4.08381 5.55482 251 A - - : 1.38629 1.38629 1.38629 1.38629 0.00602 5.80919 5.80919 1.46634 0.26236 1.09861 0.40547 63 4.56160 3.59744 0.05179 4.37164 252 G - - : 1.38629 1.38629 1.38629 1.38629 0.00602 5.80919 5.80919 1.46634 0.26236 1.09861 0.40547 64 0.22650 2.71494 3.02770 2.42993 253 A - - : 1.38629 1.38629 1.38629 1.38629 0.05013 4.42180 3.30007 0.44140 1.03040 1.09861 0.40547 65 0.21581 3.43367 2.14736 3.09996 255 A - - : 1.38629 1.38629 1.38629 1.38629 0.00623 5.77472 5.77472 1.46634 0.26236 0.15073 1.96670 66 0.00749 6.28493 5.82205 5.93952 256 A - - : 1.38629 1.38629 1.38629 1.38629 0.00301 5.80618 * 1.46634 0.26236 0.00000 * //