INFERNAL1/a [1.1.5 | Sep 2023] NAME S4-Clostridia ACC RF03140 DESC S4-Clostridia ribosomal protein leader STATES 174 NODES 46 CLEN 55 W 183 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 11:06:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03140/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 140 EFFN 140.000000 CKSUM 3758985946 NULL 0.000 0.000 0.000 0.000 GA 37.50 TC 37.50 NC 37.10 EFP7GF -15.5811 0.72675 ECMLC 0.74733 -3.14926 4.32585 1600000 320128 0.003749 ECMGC 0.36556 -24.07335 -9.85163 1600000 72425 0.005523 ECMLI 0.76778 -1.83091 5.28588 1600000 283290 0.004236 ECMGI 0.39171 -18.46829 -5.57103 1600000 62534 0.006397 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 183 323 -12.278 -12.485 -0.001 -10.899 IL 1 1 2 1 4 6 26 185 325 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 6 26 185 325 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 9 26 183 323 -13.189 -0.001 -11.844 -4.085 -9.500 1.977 -8.491 D 4 2 3 5 3 2 22 181 321 -6.174 -1.687 -0.566 IL 5 5 3 5 3 5 25 184 324 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 8 25 182 322 -13.189 -0.001 -11.844 1.949 -8.345 -8.148 -2.911 D 7 5 3 8 3 2 21 180 320 -6.174 -1.687 -0.566 IL 8 8 3 8 3 5 24 183 323 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 7 24 181 321 -13.189 -0.001 -11.844 1.997 -9.240 -8.478 -8.593 D 10 8 3 11 3 2 20 179 319 -6.174 -1.687 -0.566 IL 11 11 3 11 3 5 24 182 322 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 6 23 180 320 -13.485 -0.001 -11.803 1.947 -8.607 -2.861 -8.229 D 13 11 3 14 3 2 20 179 319 -5.620 -0.734 -1.403 IL 14 14 3 14 3 4 23 181 321 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 248 - g - - MR 15 14 3 17 3 5 22 179 319 -13.485 -0.013 -6.794 0.713 -6.555 0.985 -1.431 D 16 14 3 17 3 2 19 178 317 -6.390 -1.568 -0.620 IR 17 17 3 17 3 4 22 180 320 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 247 - G - - MR 18 17 3 20 3 6 21 178 318 -13.472 -0.001 -11.790 0.531 -8.024 1.349 -7.801 D 19 17 3 20 3 2 18 177 317 -8.218 -0.298 -2.447 IR 20 20 3 20 3 3 20 179 318 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 246 - A - - MR 21 20 3 23 3 6 20 177 317 -13.485 -0.001 -11.803 1.810 -5.592 -3.202 -1.460 D 22 20 3 23 3 1 16 175 315 -6.390 -1.568 -0.620 IR 23 23 3 23 3 3 19 178 317 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 245 - U - - MR 24 23 3 26 3 5 19 176 316 -13.485 -0.001 -11.803 -7.544 -1.953 -8.314 1.900 D 25 23 3 26 3 1 16 174 314 -6.390 -1.568 -0.620 IR 26 26 3 26 3 3 19 177 316 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 244 - U - - MR 27 26 3 29 3 4 18 175 315 -2.957 -0.199 -11.803 -8.008 -3.742 -8.814 1.971 D 28 26 3 29 3 1 15 173 313 -6.390 -1.568 -0.620 IR 29 29 3 29 3 4 19 177 317 -0.623 -1.518 -9.626 0.000 0.000 0.000 0.000 [ MATR 10 ] - 239 - A - - MR 30 29 3 32 3 3 17 174 314 -13.485 -0.001 -11.803 1.578 -4.051 -0.579 -1.811 D 31 29 3 32 3 0 15 172 312 -6.390 -1.568 -0.620 IR 32 32 3 32 3 3 17 174 314 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 238 - A - - MR 33 32 3 35 3 2 16 173 313 -13.485 -0.001 -11.803 1.824 -7.282 -7.642 -1.158 D 34 32 3 35 3 0 14 171 311 -6.390 -1.568 -0.620 IR 35 35 3 35 3 2 16 173 313 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 237 - C - - MR 36 35 3 38 2 1 15 172 312 -13.839 -0.000 -8.988 1.997 -9.535 -7.854 D 37 35 3 38 2 0 14 171 311 -4.432 -0.068 IR 38 38 3 38 2 1 15 172 312 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 39 38 3 40 111 0 14 171 311 [ BEGL 14 ] - - - - - - S 40 39 1 41 4 0 0 69 124 -0.002 -11.212 -10.620 -11.260 [ MATP 15 ] 5 80 G U - - MP 41 40 1 45 6 2 2 69 124 -13.104 -13.043 -0.001 -11.820 -12.100 -12.495 -9.097 -1.367 -9.292 -2.305 -11.424 -12.583 -6.884 -9.334 -8.852 -4.418 -9.522 3.883 -6.812 -0.797 -8.715 -7.890 ML 42 40 1 45 6 1 1 67 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 1 45 6 1 1 67 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 1 45 6 0 0 63 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 68 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 68 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 6 79 G C - - MP 47 46 6 51 6 2 2 67 122 -13.104 -13.043 -0.001 -11.820 -12.100 -12.495 -10.420 -7.680 -11.369 1.438 -12.330 -9.101 -6.944 -11.273 -8.996 3.726 -9.275 -5.474 -7.213 -9.463 -9.248 -10.057 ML 48 46 6 51 6 1 1 65 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 65 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 61 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 66 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 66 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 7 78 c g - - MP 53 52 6 57 6 2 2 65 120 -13.104 -13.043 -0.001 -11.820 -12.100 -12.495 -7.432 -7.129 -7.431 -0.514 -6.301 -8.273 2.685 -6.953 -7.291 1.803 -7.803 -1.856 1.338 -7.613 1.323 -6.010 ML 54 52 6 57 6 1 1 63 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 63 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 59 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 64 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 64 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 8 77 c g - - MP 59 58 6 63 6 2 2 63 118 -13.104 -13.043 -0.001 -11.820 -12.100 -12.495 -7.877 -7.609 -7.819 -0.957 -6.623 -8.573 2.982 -7.310 -3.025 -3.224 -8.175 -2.344 2.393 -8.034 0.890 -6.427 ML 60 58 6 63 6 1 1 61 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 61 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 57 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 62 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 62 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 9 76 G C - - MP 65 64 6 69 6 2 2 61 116 -13.104 -7.556 -0.009 -11.820 -12.100 -12.495 -7.672 -6.308 -2.603 1.801 -8.766 -8.286 -3.854 -8.136 -7.832 3.484 -8.155 -0.885 -1.054 -7.511 -5.853 -6.459 ML 66 64 6 69 6 1 1 59 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 59 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 55 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 60 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 60 115 -2.988 -0.313 -6.499 -4.666 -5.772 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 74 u a - - MP 71 70 6 75 6 2 2 59 114 -13.104 -13.043 -0.177 -11.820 -7.479 -3.195 -7.958 -7.700 -1.867 -3.547 -3.037 -8.623 2.465 -7.373 -7.775 1.542 -8.240 -5.303 2.469 -8.109 0.569 -6.503 ML 72 70 6 75 6 1 1 57 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 57 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 54 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 58 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 58 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 73 g c - - MP 77 76 6 81 6 2 2 57 112 -12.929 -12.868 -0.566 -11.645 -6.817 -1.665 -6.944 -5.585 -6.763 2.473 -7.879 -7.359 0.253 -3.319 -7.199 2.853 -7.446 0.005 -1.491 -6.618 -1.047 -5.727 ML 78 76 6 81 6 1 1 55 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 54 109 -7.982 -6.711 -2.620 -6.689 -1.823 -0.912 -0.611 -0.783 -1.278 1.234 D 80 76 6 81 6 0 0 54 108 -13.978 -12.676 -8.473 -9.155 -9.173 -0.009 IL 81 81 5 81 6 1 1 57 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 57 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 72 u a - - MP 83 82 6 87 4 2 2 56 110 -1.635 -2.297 -1.078 -10.120 -5.413 -2.528 -5.544 1.196 -2.480 -6.393 1.826 -5.542 -5.534 0.884 -6.084 -3.568 2.091 -5.700 1.357 -0.112 ML 84 82 6 87 4 1 1 51 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 47 101 -6.199 -5.228 -0.443 -2.156 -0.882 -0.992 -1.575 1.389 D 86 82 6 87 4 0 0 54 108 -6.163 -0.496 -1.890 -7.169 IL 87 87 5 87 4 1 1 56 111 -1.550 -0.624 -6.835 -10.572 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 54 109 -0.486 -1.821 -8.376 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - a - - - ML 89 88 6 91 3 1 1 16 34 -13.181 -0.009 -7.400 0.239 -0.678 0.065 0.200 D 90 88 6 91 3 0 0 17 35 -7.758 -3.271 -0.165 IL 91 91 3 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - a - - - ML 92 91 3 94 3 1 1 15 33 -13.173 -0.001 -11.827 0.534 -1.071 -0.642 0.522 D 93 91 3 94 3 0 0 16 34 -8.478 -3.991 -0.098 IL 94 94 3 94 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - u - - - ML 95 94 3 97 3 1 1 14 32 -13.173 -0.117 -3.688 0.511 -1.007 -0.881 0.617 D 96 94 3 97 3 0 0 14 33 -8.478 -3.991 -0.098 IL 97 97 3 97 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - a - - - ML 98 97 3 100 3 1 1 13 31 -13.057 -0.416 -1.998 0.638 -0.327 -1.775 0.437 D 99 97 3 100 3 0 0 12 30 -11.145 -6.658 -0.015 IL 100 100 3 100 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - c - - - ML 101 100 3 103 3 1 1 11 30 -12.642 -0.100 -3.902 -0.344 0.529 -0.900 0.303 D 102 100 3 103 3 0 0 10 28 -12.959 -8.472 -0.004 IL 103 103 3 103 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - c - - - ML 104 103 3 106 3 1 1 10 28 -12.543 -0.177 -3.118 -0.457 0.531 -0.266 -0.007 D 105 103 3 106 3 0 0 8 27 -13.151 -8.664 -0.004 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - c - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 -0.162 0.152 0.042 -0.051 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 111 39 1 112 5 0 2 147 287 -12.128 -0.001 -11.943 -12.155 -13.047 IL 112 112 2 112 5 1 1 148 287 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 81 236 G C - - MP 113 112 2 117 6 2 2 147 287 -13.104 -13.043 -0.034 -11.820 -12.100 -5.480 -10.742 -7.671 -12.180 -5.018 -12.518 -8.938 -6.959 -11.955 -9.017 3.711 -9.247 1.507 -7.281 -9.365 -9.345 -10.958 ML 114 112 2 117 6 1 1 145 284 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 2 117 6 1 1 144 284 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 2 117 6 0 0 143 282 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 146 286 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 146 285 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 82 235 G C - - MP 119 118 6 123 6 2 2 145 285 -13.072 -13.011 -0.020 -11.787 -7.299 -7.180 -10.998 -7.632 -13.280 -5.105 -12.617 -8.797 -6.927 -12.750 -9.000 3.993 -9.193 -5.563 -7.293 -9.264 -9.374 -12.352 ML 120 118 6 123 6 1 1 143 282 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 141 281 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 142 282 -11.858 -10.557 -0.202 -7.036 -7.053 -3.129 IL 123 123 5 123 6 1 1 144 284 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 144 283 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 83 234 G C - - MP 125 124 6 129 6 2 2 143 283 -13.086 -13.025 -0.010 -7.349 -12.081 -12.476 -8.860 -7.389 -8.962 2.474 -10.606 -10.113 -5.800 -9.202 -8.641 3.250 -9.157 -0.856 -5.936 -9.353 -1.656 -7.686 ML 126 124 6 129 6 1 1 141 281 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 138 278 -8.060 -6.789 -2.698 -6.767 -0.336 -4.981 -0.708 1.163 -1.471 -0.343 D 128 124 6 129 6 0 0 139 279 -10.522 -9.220 -0.576 -5.699 -5.717 -1.792 IL 129 129 5 129 6 1 1 142 282 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 142 281 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 84 233 U A - - MP 131 130 6 135 6 2 2 141 281 -13.087 -13.026 -0.158 -11.803 -4.683 -3.961 -7.635 -7.351 -7.608 1.007 -6.444 -8.408 2.223 -7.114 -7.477 -1.526 -2.952 -4.931 3.037 -7.806 -0.884 -6.200 ML 132 130 6 135 6 1 1 140 280 -7.405 -7.751 -0.450 -2.160 -7.601 -5.130 -0.660 -0.820 -1.333 1.265 MR 133 130 6 135 6 1 1 136 275 -8.060 -6.789 -2.698 -6.767 -0.336 -4.981 -0.613 -1.650 1.346 -1.039 D 134 130 6 135 6 0 0 131 271 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 140 280 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 140 280 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 85 232 g c - - MP 137 136 6 141 6 2 2 139 279 -12.940 -12.879 -0.076 -11.656 -11.936 -4.312 -6.953 -1.963 -6.772 1.739 -7.897 -7.369 0.228 -7.460 -2.304 2.946 -7.456 0.567 0.803 -6.627 -4.973 -5.737 ML 138 136 6 141 6 1 1 138 278 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 133 273 -10.182 -8.911 -4.820 -8.889 -0.609 -1.719 0.809 0.664 -2.137 -1.197 D 140 136 6 141 6 0 0 128 267 -13.227 -11.925 -7.722 -8.405 -8.422 -0.016 IL 141 141 5 141 6 1 1 139 278 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 138 278 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 86 231 u a - - MP 143 142 6 147 6 2 2 138 277 -12.866 -12.805 -0.588 -6.346 -4.843 -1.800 -7.238 -6.943 -7.233 -0.379 -3.018 -8.067 2.395 -6.749 -7.093 0.900 -7.603 -4.513 2.569 -7.418 0.951 -5.814 ML 144 142 6 147 6 1 1 137 277 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 133 273 -9.674 -8.403 -4.312 -8.382 -0.101 -6.595 0.352 -1.272 -1.551 0.977 D 146 142 6 147 6 0 0 127 267 -14.144 -12.842 -8.639 -9.321 -9.339 -0.008 IL 147 147 5 147 6 1 1 139 278 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 138 278 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 87 230 u g - - MP 149 148 6 153 4 2 2 138 278 -0.336 -4.600 -2.595 -10.030 -3.657 -3.867 0.181 1.477 -3.844 -4.705 0.629 -4.204 -2.334 1.137 -1.032 0.540 0.854 -1.858 1.883 -3.123 ML 150 148 6 153 4 1 1 135 275 -0.634 -5.321 -1.888 -4.051 0.691 -1.246 0.410 -0.654 MR 151 148 6 153 4 1 1 132 272 -1.396 -2.637 -1.267 -4.521 0.223 -0.819 0.283 0.069 D 152 148 6 153 4 0 0 127 267 -3.065 -0.962 -1.476 -7.066 IL 153 153 5 153 4 1 1 137 277 -0.274 -2.540 -10.162 -13.899 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 128 268 -0.190 -3.019 -13.187 0.000 0.000 0.000 0.000 [ MATL 39 ] 121 - a - - - ML 155 154 6 157 3 1 1 15 33 -13.189 -0.001 -11.844 0.470 -0.662 -0.005 -0.019 D 156 154 6 157 3 0 0 17 36 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 122 - a - - - ML 158 157 3 160 3 1 1 14 32 -13.189 -0.001 -11.844 0.738 -0.128 -0.767 -0.269 D 159 157 3 160 3 0 0 16 35 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 123 - c - - - ML 161 160 3 163 3 1 1 12 31 -13.189 -0.256 -2.622 0.166 0.342 -0.936 0.121 D 162 160 3 163 3 0 0 15 33 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 124 - a - - - ML 164 163 3 166 3 1 1 11 30 -12.934 -0.322 -2.321 0.718 -1.272 -0.052 -0.035 D 165 163 3 166 3 0 0 10 29 -12.009 -7.522 -0.008 IL 166 166 3 166 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 125 - c - - - ML 167 166 3 169 3 1 1 10 28 -12.613 -0.291 -2.453 0.202 0.341 -0.602 -0.113 D 168 166 3 169 3 0 0 9 27 -13.020 -8.533 -0.004 IL 169 169 3 169 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 126 - a - - - ML 170 169 3 172 2 1 1 1 1 * 0.000 0.782 0.280 -1.831 -0.348 D 171 169 3 172 2 0 0 0 0 * 0.000 IL 172 172 3 172 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 173 172 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME S4-Clostridia ACC RF03140 DESC S4-Clostridia ribosomal protein leader LENG 55 MAXL 195 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 11:06:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03140/CM NSEQ 140 EFFN 127.622681 CKSUM 3758985946 STATS LOCAL MSV -8.0344 0.72675 STATS LOCAL VITERBI -8.9793 0.72675 STATS LOCAL FORWARD -3.3106 0.72675 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31582 1.48339 1.29336 1.46737 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 0.00000 * 1 4.21458 7.87932 0.01605 7.18153 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 2 0.03549 7.05252 6.92752 3.41064 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 3 0.00192 7.70569 7.17888 7.25923 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 4 0.03660 7.24612 3.37255 6.99043 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 5 3.28101 7.11778 0.07850 3.29431 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 6 1.77565 7.09261 0.18765 7.02443 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 7 3.08493 0.90933 1.44482 1.15302 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 8 3.38268 0.70588 3.57198 0.81132 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 9 1.47339 5.15993 0.31190 3.40956 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 10 3.72811 1.04104 1.69173 0.82400 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.12770 7.25982 2.12713 1.46634 0.26236 1.09861 0.40547 11 1.05494 2.50507 0.66346 2.89953 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.41321 7.13372 1.08565 1.46634 0.26236 2.95577 0.05344 12 1.84708 1.44634 2.08403 0.72889 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.38361 1.14756 6.73240 0.41287 1.08397 0.00342 5.67990 13 1.22038 1.85490 1.34320 1.24686 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01285 7.25982 4.41747 1.46634 0.26236 1.09861 0.40547 14 1.01722 2.12524 1.83002 1.02559 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00142 7.24839 7.24839 1.46634 0.26236 2.95262 0.05361 15 1.03261 2.08098 1.99500 0.95945 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08178 7.24839 2.55343 1.46634 0.26236 2.95262 0.05361 16 0.94508 1.61282 2.60704 1.08390 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.28886 7.16816 1.38585 1.46634 0.26236 4.84852 0.00787 17 1.62069 1.02300 2.00809 1.17611 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07079 6.88135 2.69838 1.46634 0.26236 6.11159 0.00222 18 1.69750 1.02197 1.57212 1.38882 20 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07954 6.81277 2.58549 1.46634 0.26236 1.43049 0.27337 19 1.49496 1.28368 1.36002 1.41852 21 c - - _ 1.38629 1.38629 1.38629 1.38629 1.18200 0.46967 2.68639 1.39612 0.28443 0.22821 1.58943 20 1.28155 2.04820 0.97180 1.53701 72 g - - > 1.38629 1.38629 1.38629 1.38629 0.13064 7.14305 2.10641 1.46634 0.26236 0.06196 2.81202 21 3.68794 0.79400 2.24580 0.87442 73 c - - > 1.38629 1.38629 1.38629 1.38629 0.00159 7.14002 7.14002 1.46634 0.26236 0.01230 4.40397 22 1.04000 1.70051 0.78839 4.66913 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.00681 5.10193 7.25982 0.21700 1.63441 1.09861 0.40547 23 3.45847 0.35830 4.08305 1.37516 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 24 1.08936 4.76433 0.49697 3.06468 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 25 1.83057 1.52001 0.58419 2.75813 78 G - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 26 7.03616 0.18923 6.95479 1.76860 79 C - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 27 6.78416 2.75737 6.81469 0.06794 80 U - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 28 5.95317 7.16505 0.00414 7.17987 81 G - - < 1.38629 1.38629 1.38629 1.38629 0.02475 7.25982 3.74060 1.46634 0.26236 1.09861 0.40547 29 5.98261 7.09797 0.00415 7.14275 82 G - - < 1.38629 1.38629 1.38629 1.38629 0.01486 7.23651 4.26682 1.46634 0.26236 0.05756 2.88363 30 1.05691 6.35777 0.46355 3.83072 83 G - - < 1.38629 1.38629 1.38629 1.38629 0.00143 7.24673 7.24673 1.46634 0.26236 0.69927 0.68707 31 2.06414 1.22924 3.39263 0.60342 84 U - - < 1.38629 1.38629 1.38629 1.38629 0.11343 7.25361 2.23939 1.46634 0.26236 2.46882 0.08849 32 1.48802 2.59385 0.53410 2.17813 85 G - - < 1.38629 1.38629 1.38629 1.38629 0.05525 7.14176 2.93827 1.46634 0.26236 5.08355 0.00622 33 2.98362 1.08748 2.11284 0.71043 86 u - - < 1.38629 1.38629 1.38629 1.38629 0.33859 7.08819 1.25040 1.46634 0.26236 1.69543 0.20275 34 1.36092 2.21277 1.30366 1.01434 87 u - - < 1.38629 1.38629 1.38629 1.38629 1.69039 0.20526 6.79841 1.73682 0.19368 0.00379 5.57704 35 1.06126 1.84416 1.39130 1.39807 121 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 36 0.87650 1.47572 1.91664 1.56998 122 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 37 1.27067 1.15125 2.03289 1.30137 123 c - - _ 1.38629 1.38629 1.38629 1.38629 0.17817 7.25982 1.81711 1.46634 0.26236 1.09861 0.40547 38 0.89006 2.26241 1.42355 1.40890 124 a - - _ 1.38629 1.38629 1.38629 1.38629 0.22432 7.08333 1.60895 1.46634 0.26236 5.45133 0.00430 39 1.24589 1.15318 1.80284 1.46165 125 c - - _ 1.38629 1.38629 1.38629 1.38629 0.09216 6.86111 2.44193 1.46634 0.26236 0.31831 1.29966 40 0.84714 1.19514 2.64112 1.62244 126 a - - _ 1.38629 1.38629 1.38629 1.38629 1.51653 0.33010 2.78587 2.19368 0.11823 0.87072 0.54240 41 1.89233 1.83074 0.87976 1.29425 230 g - - > 1.38629 1.38629 1.38629 1.38629 0.14283 7.11257 2.02284 1.46634 0.26236 0.11499 2.21982 42 0.97680 2.13917 0.82499 2.69569 231 g - - > 1.38629 1.38629 1.38629 1.38629 0.00161 7.12382 7.12382 1.46634 0.26236 0.72983 0.65777 43 1.99187 0.70591 2.57887 1.22404 232 c - - > 1.38629 1.38629 1.38629 1.38629 0.00794 7.19202 4.93935 1.46634 0.26236 0.02100 3.87350 44 0.67153 3.74099 1.09033 2.04607 233 A - - > 1.38629 1.38629 1.38629 1.38629 0.00830 7.25381 4.88568 1.46634 0.26236 0.19082 1.75033 45 5.92561 0.51992 3.81912 0.96545 234 C - - > 1.38629 1.38629 1.38629 1.38629 0.02492 7.25299 3.73377 1.46634 0.26236 0.17169 1.84668 46 7.19721 0.00520 7.03647 5.63770 235 C - - > 1.38629 1.38629 1.38629 1.38629 0.00144 7.23651 7.23651 1.46634 0.26236 0.05756 2.88363 47 7.26170 0.19924 7.08834 1.71977 236 C - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 48 7.50035 0.00213 7.87260 6.72801 237 C - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 49 0.12212 6.30781 6.55372 2.19181 238 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 50 0.29306 4.17207 1.78886 2.63869 239 A - - : 1.38629 1.38629 1.38629 1.38629 0.13926 2.04563 7.25982 1.07579 0.41707 1.09861 0.40547 51 6.79982 3.97252 7.35398 0.02079 244 U - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 52 6.48056 2.73886 7.01136 0.06943 245 U - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 53 0.13212 5.19896 3.59772 2.39845 246 A - - : 1.38629 1.38629 1.38629 1.38629 0.01019 7.25982 4.66351 1.46634 0.26236 1.09861 0.40547 54 1.01752 6.83958 0.45226 6.68267 247 G - - : 1.38629 1.38629 1.38629 1.38629 0.00142 7.25105 7.25105 1.46634 0.26236 0.13898 2.04214 55 0.89273 5.81846 0.70376 2.37764 248 g - - : 1.38629 1.38629 1.38629 1.38629 0.00070 7.25912 * 1.46634 0.26236 0.00000 * //