INFERNAL1/a [1.1.5 | Sep 2023] NAME S4-Fusobacteriales ACC RF03133 DESC S4-Fusobacteriales ribosomal protein leader STATES 189 NODES 49 CLEN 60 W 107 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 00:44:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03133/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 84 EFFN 4.160522 CKSUM 3176472191 NULL 0.000 0.000 0.000 0.000 GA 48.80 TC 50.20 NC 48.40 EFP7GF -13.3968 0.71920 ECMLC 0.57163 -6.90581 3.75379 1600000 531488 0.002258 ECMGC 0.41732 -15.66781 -2.38378 1600000 102244 0.003912 ECMLI 0.56672 -5.33969 4.87291 1600000 391508 0.003065 ECMGI 0.45252 -9.89081 1.52669 1600000 70130 0.005704 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 107 157 -7.656 -7.863 -0.032 -6.277 IL 1 1 2 1 4 2 21 109 159 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 109 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 2 21 107 157 -8.632 -0.013 -7.286 -1.399 1.000 -2.277 0.501 D 4 2 3 5 3 0 15 105 155 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 108 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 2 21 106 156 -8.632 -0.013 -7.286 -1.814 -1.813 -2.190 1.683 D 7 5 3 8 3 0 15 104 154 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 107 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 2 20 105 155 -8.632 -0.013 -7.286 -2.400 -3.589 1.833 -2.599 D 10 8 3 11 3 0 14 103 153 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 106 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 2 19 104 154 -8.632 -0.013 -7.286 -2.749 -2.539 -3.523 1.845 D 13 11 3 14 3 0 13 102 152 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 105 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 18 103 153 -8.632 -0.013 -7.286 1.894 -3.694 -3.207 -3.369 D 16 14 3 17 3 0 12 101 151 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 17 104 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 17 102 152 -8.632 -0.013 -7.286 1.894 -3.694 -3.207 -3.369 D 19 17 3 20 3 0 12 100 150 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 16 103 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 17 101 151 -8.987 -0.012 -7.305 1.894 -3.694 -3.207 -3.369 D 22 20 3 23 3 0 11 100 150 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 15 102 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 103 - A - - MR 24 23 3 26 3 1 16 100 150 -8.987 -0.012 -7.305 1.775 -2.906 -1.862 -2.572 D 25 23 3 26 3 0 10 98 148 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 101 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 102 - A - - MR 27 26 3 29 3 1 15 99 149 -5.105 -0.052 -7.305 1.894 -3.694 -3.207 -3.369 D 28 26 3 29 3 0 9 97 147 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 14 100 150 -1.785 -0.590 -4.464 0.000 0.000 0.000 0.000 [ MATR 10 ] - 99 - G - - MR 30 29 3 32 3 1 15 98 148 -8.987 -0.012 -7.305 -2.891 -4.269 1.900 -3.628 D 31 29 3 32 3 0 9 96 146 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 13 99 149 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 98 - a - - MR 33 32 3 35 3 1 14 97 147 -8.987 -0.012 -7.305 0.592 -1.041 -0.121 0.120 D 34 32 3 35 3 0 8 95 145 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 12 98 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 97 - A - - MR 36 35 3 38 3 1 14 96 146 -8.987 -0.012 -7.305 1.894 -3.694 -3.207 -3.369 D 37 35 3 38 3 0 7 94 144 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 97 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 96 - G - - MR 39 38 3 41 5 1 13 95 145 -6.537 -0.034 -7.507 -7.719 -8.610 -2.891 -4.269 1.900 -3.628 D 40 38 3 41 5 0 7 94 144 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 10 95 145 -2.298 -0.517 -5.991 -4.158 -5.264 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 93 G C - - MP 42 41 3 46 6 2 14 94 144 -9.420 -9.359 -0.017 -8.136 -8.415 -8.810 -4.413 -2.983 -4.401 0.790 -5.465 -4.979 -0.694 -4.836 -4.339 3.254 -4.721 1.530 -0.942 -4.367 -2.690 -3.272 ML 43 41 3 46 6 1 9 92 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 9 92 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 5 88 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 10 94 144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 10 93 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 92 A U - - MP 48 47 6 52 6 2 13 92 142 -9.420 -9.359 -0.017 -8.136 -8.415 -8.810 -4.056 -2.919 -4.137 3.048 -5.110 -5.557 -0.709 -4.372 -4.011 1.781 -4.559 1.238 -0.909 -4.597 -2.611 -2.938 ML 49 47 6 52 6 1 8 90 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 8 90 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 5 87 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 9 92 142 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 10 91 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 91 u a - - MP 54 53 6 58 6 2 12 90 140 -9.420 -7.659 -0.022 -8.136 -8.415 -8.810 -4.319 -4.278 -4.157 -0.429 -2.981 -4.704 2.373 -3.724 -4.152 -0.253 -4.529 -2.208 2.873 -4.442 0.038 -2.991 ML 55 53 6 58 6 1 8 88 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 8 88 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 5 85 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 9 90 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 9 89 139 -2.445 -0.482 -5.956 -4.123 -5.229 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 89 A U - - MP 60 59 6 64 6 2 11 88 138 -9.420 -9.359 -0.017 -8.136 -8.415 -8.810 -5.076 -3.859 -4.902 3.784 -6.015 -7.262 -1.634 -4.858 -4.863 -0.328 -5.466 -1.184 -2.030 -6.164 -3.563 -3.744 ML 61 59 6 64 6 1 8 87 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 7 86 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 4 83 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 8 88 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 9 87 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 88 U A - - MP 66 65 6 70 6 2 9 86 136 -9.420 -9.359 -0.022 -7.162 -8.415 -8.810 -5.997 -5.843 -5.620 -2.063 -4.256 -6.015 0.072 -5.050 -5.615 -1.993 -5.903 -3.705 3.792 -6.046 -1.889 -4.145 ML 67 65 6 70 6 1 7 85 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 7 85 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 4 82 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 7 86 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 7 86 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 87 G C - - MP 72 71 6 76 4 2 7 84 134 -2.862 -8.762 -0.263 -5.216 -5.143 -3.354 -5.228 0.520 -6.206 -5.041 -1.316 -5.648 -4.733 3.677 -5.048 -0.828 -1.590 -4.784 -3.369 -4.105 ML 73 71 6 76 4 1 5 83 133 -2.572 -4.696 -1.084 -1.637 0.357 -0.538 0.117 -0.079 MR 74 71 6 76 4 1 6 83 133 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 4 82 132 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 6 83 133 -3.606 -5.108 -0.322 -3.487 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 6 84 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 86 - g - - MR 78 77 6 80 2 1 5 82 132 -9.128 -0.003 0.255 -1.590 0.965 -0.937 D 79 77 6 80 2 0 4 81 131 -4.432 -0.068 IR 80 80 3 80 2 1 5 83 133 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 21 ] - - - - - - B 81 80 3 82 135 0 4 81 131 [ BEGL 22 ] - - - - - - S 82 81 1 83 4 0 0 31 49 -0.034 -7.234 -6.641 -7.281 [ MATP 23 ] 15 34 u a - - MP 83 82 1 87 6 2 2 31 49 -9.420 -9.359 -0.088 -6.775 -5.166 -5.719 -2.177 -2.270 -2.350 0.976 -2.180 -3.186 1.604 -2.586 -2.395 0.971 -2.950 0.756 1.951 -1.966 0.403 -1.134 ML 84 82 1 87 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 1 87 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 1 87 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 33 u a - - MP 89 88 6 93 6 2 2 29 47 -2.829 -9.289 -0.237 -8.066 -8.346 -8.741 -2.045 -2.175 -2.221 1.099 -2.078 -3.066 1.504 -2.478 -2.273 0.969 -2.230 -0.503 1.907 -2.362 0.088 0.777 ML 90 88 6 93 6 1 1 28 46 -6.377 -6.723 -1.141 -1.132 -6.573 -4.103 0.205 -0.364 -0.375 0.377 MR 91 88 6 93 6 1 1 28 46 -1.893 -6.158 -2.066 -6.136 -1.270 -4.349 -0.127 -0.465 -0.740 0.817 D 92 88 6 93 6 0 0 26 45 -9.484 -8.183 -1.626 -4.662 -4.679 -0.755 IL 93 93 5 93 6 1 1 28 46 -4.125 -4.388 -0.218 -6.043 -6.819 -6.480 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 32 G C - - MP 95 94 6 99 4 2 2 27 45 -7.656 -4.949 -0.652 -1.616 -3.846 -2.627 -3.750 1.532 -4.576 -4.418 0.105 -4.286 -4.014 3.021 -4.349 0.789 0.174 -3.688 -1.875 -2.702 ML 96 94 6 99 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 27 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 26 44 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 29 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 27 45 -1.578 -0.705 -4.278 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 101 100 6 103 5 1 1 24 42 -7.229 -0.059 -5.440 -7.257 -8.148 1.281 -1.372 -0.887 -0.639 D 102 100 6 103 5 0 0 23 41 -6.756 -0.189 -6.017 -4.392 -4.305 IL 103 103 3 103 5 1 1 25 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 30 G C - - MP 104 103 3 108 6 2 2 23 41 -9.411 -9.350 -0.017 -8.126 -8.406 -8.801 -4.596 -3.063 -4.553 0.382 -5.406 -4.748 -0.127 -5.061 -4.482 3.527 -4.780 0.043 -0.882 -4.278 -2.617 -3.480 ML 105 103 3 108 6 1 1 22 40 -6.396 -6.742 -1.119 -1.151 -6.592 -4.121 0.185 -0.365 -0.397 0.409 MR 106 103 3 108 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 3 108 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 29 C G - - MP 110 109 6 114 6 2 2 21 39 -9.420 -9.359 -0.017 -8.136 -8.415 -8.810 -4.689 -4.659 -4.403 -0.761 -3.066 -4.841 3.274 -3.862 -4.413 -0.589 -4.725 -2.579 1.893 -4.746 -0.713 -3.223 ML 111 109 6 114 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 28 c g - - MP 116 115 6 120 4 2 2 19 37 -7.656 -5.311 -0.063 -6.277 -3.598 -3.604 -3.609 0.061 -1.541 -4.317 2.310 -3.407 -3.602 0.187 -4.074 -1.660 2.175 -3.819 1.541 -2.531 ML 117 115 6 120 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 119 115 6 120 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 120 120 5 120 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 121 121 6 121 3 1 1 20 38 -1.544 -0.727 -4.244 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - G - - - ML 122 121 6 124 3 1 1 16 34 -8.632 -0.013 -7.286 -2.891 -4.269 1.900 -3.628 D 123 121 6 124 3 0 0 16 34 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - U - - - ML 125 124 3 127 3 1 1 14 33 -8.632 -0.013 -7.286 -2.749 -2.539 -3.523 1.845 D 126 124 3 127 3 0 0 15 33 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - A - - - ML 128 127 3 130 3 1 1 13 31 -8.632 -0.013 -7.286 1.894 -3.694 -3.207 -3.369 D 129 127 3 130 3 0 0 13 32 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - G - - - ML 131 130 3 133 2 1 1 1 1 * 0.000 -2.107 -3.769 1.842 -3.187 D 132 130 3 133 2 0 0 0 0 * 0.000 IL 133 133 3 133 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 134 133 3 -1 0 0 0 0 0 [ BEGR 35 ] - - - - - - S 135 81 1 136 3 0 0 64 114 -8.632 -0.013 -7.286 IL 136 136 2 136 3 1 1 66 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - u - - - ML 137 136 2 139 3 1 1 64 114 -8.632 -0.398 -2.068 -0.660 0.143 -1.513 0.936 D 138 136 2 139 3 0 0 63 113 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 65 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - u - - - ML 140 139 3 142 5 1 1 64 114 -5.757 -0.051 -7.162 -7.374 -8.266 0.205 -0.939 -1.113 0.898 D 141 139 3 142 5 0 0 62 112 -6.505 -0.228 -5.766 -4.141 -4.054 IL 142 142 3 142 5 1 1 64 114 -2.467 -0.473 -4.146 -5.978 -5.252 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 85 C G - - MP 143 142 3 147 6 2 2 63 113 -9.420 -9.359 -0.017 -8.136 -8.415 -8.810 -4.388 -4.351 -4.205 -0.489 -2.995 -4.731 3.111 -3.749 -4.201 -0.318 -4.567 -2.278 1.547 -4.499 1.048 -3.034 ML 144 142 3 147 6 1 1 61 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 3 147 6 1 1 60 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 57 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 62 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 62 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 39 84 C G - - MP 149 148 6 153 6 2 2 61 111 -9.420 -9.359 -0.017 -8.136 -8.415 -8.810 -4.603 -4.562 -4.349 -0.666 -3.048 -4.816 3.145 -3.830 -4.352 -0.490 -4.682 -2.471 2.143 -4.677 -0.691 -3.166 ML 150 148 6 153 6 1 1 59 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 58 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 54 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 60 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 60 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 83 u a - - MP 155 154 6 159 6 2 2 59 109 -9.420 -9.359 -0.032 -8.136 -8.415 -6.332 -4.347 -4.297 -4.179 -0.426 -2.987 -4.723 2.662 -3.732 -4.170 -0.247 -4.545 -2.207 2.662 -4.465 -0.197 -3.002 ML 156 154 6 159 6 1 1 56 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 56 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 52 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 58 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 58 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 82 a u - - MP 161 160 6 165 6 2 2 57 107 -9.405 -9.344 -0.070 -8.121 -8.401 -4.736 -2.845 -2.789 -2.960 1.907 -2.561 -3.778 1.705 -3.035 -2.989 1.169 -3.519 -0.916 1.650 -3.099 0.777 -1.990 ML 162 160 6 165 6 1 1 54 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 53 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 49 99 -9.329 -8.027 -3.824 -4.506 -4.524 -0.257 IL 165 165 5 165 6 1 1 56 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 56 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 81 u a - - MP 167 166 6 171 4 2 2 55 105 -1.387 -1.923 -1.557 -6.141 -1.948 -2.527 -2.683 1.591 -2.402 -3.515 1.777 -2.837 -2.724 1.348 -3.266 -0.742 1.946 -2.814 -0.206 -1.767 ML 168 166 6 171 4 1 1 49 99 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 4 1 1 47 98 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 170 166 6 171 4 0 0 46 96 -5.484 -2.844 -1.093 -1.436 IL 171 171 5 171 4 1 1 55 105 -0.555 -1.894 -4.414 -8.152 0.000 0.000 0.000 0.000 IR 172 172 6 172 3 1 1 48 96 -0.548 -1.693 -7.261 0.000 0.000 0.000 0.000 [ MATL 43 ] 60 - a - - - ML 173 172 6 175 3 1 1 17 35 -8.632 -0.013 -7.286 0.656 -0.968 -0.409 0.215 D 174 172 6 175 3 0 0 17 35 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 61 - a - - - ML 176 175 3 178 3 1 1 16 34 -8.632 -0.013 -7.286 0.865 -1.198 -0.500 0.052 D 177 175 3 178 3 0 0 16 34 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 62 - u - - - ML 179 178 3 181 3 1 1 14 33 -8.632 -0.027 -5.958 0.324 -0.823 -1.379 0.847 D 180 178 3 181 3 0 0 14 33 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 63 - u - - - ML 182 181 3 184 3 1 1 13 31 -8.618 -0.314 -2.372 0.311 -0.646 -0.786 0.623 D 183 181 3 184 3 0 0 13 32 -6.366 -1.879 -0.482 IL 184 184 3 184 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 64 - u - - - ML 185 184 3 187 2 1 1 1 1 * 0.000 -0.229 -0.647 0.101 0.522 D 186 184 3 187 2 0 0 0 0 * 0.000 IL 187 187 3 187 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 188 187 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME S4-Fusobacteriales ACC RF03133 DESC S4-Fusobacteriales ribosomal protein leader LENG 60 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 00:44:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03133/CM NSEQ 84 EFFN 8.641479 CKSUM 3176472191 STATS LOCAL MSV -8.2011 0.71920 STATS LOCAL VITERBI -8.4797 0.71920 STATS LOCAL FORWARD -3.5147 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23061 1.76587 1.30442 1.32607 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 0.00000 * 1 3.00840 0.56619 3.68963 1.02732 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 2 3.28613 3.20575 3.24219 0.12444 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 3 3.79064 4.65500 0.06355 3.52409 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 4 4.20386 3.95240 4.75709 0.04368 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 5 0.02852 4.87685 4.49364 4.67580 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 6 0.02852 4.87685 4.49364 4.67580 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 7 0.02852 4.87685 4.49364 4.67580 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 8 2.41816 3.78332 0.14995 3.59649 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 9 0.45396 4.18747 1.11193 3.87351 9 A - - ( 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 10 3.61349 1.12672 3.40408 0.48498 10 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 11 0.05170 4.78368 3.44391 4.59731 11 A - - ( 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 12 5.10604 3.84982 5.08963 0.03408 12 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 13 2.48878 4.18769 0.12281 4.05288 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.18866 1.81476 4.70424 0.10772 2.28157 1.09861 0.40547 14 1.96946 1.63710 1.39137 0.87421 15 u - - < 1.38629 1.38629 1.38629 1.38629 0.05698 4.70424 3.07199 1.46634 0.26236 1.09861 0.40547 15 1.84840 1.74005 1.83804 0.67753 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.38885 1.16232 4.66625 0.05911 2.85779 0.33001 1.26911 16 1.61775 2.90772 0.41380 2.45431 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.45093 4.70424 1.03872 1.46634 0.26236 1.09861 0.40547 17 0.36555 2.70179 2.18096 2.07016 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.02804 4.28135 4.28135 1.46634 0.26236 0.04991 3.02229 18 2.81315 2.97070 0.15790 3.35867 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 19 3.79346 0.36981 3.65470 1.34419 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 20 3.15156 1.07701 2.94492 0.57271 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 21 4.20236 5.24653 0.02966 4.71102 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 22 4.20386 3.95240 4.75709 0.04368 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 23 0.02852 4.87685 4.49364 4.67580 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 24 3.28113 4.79024 0.06059 4.35121 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04232 3.43029 4.70424 0.48854 0.95068 1.09861 0.40547 25 1.05650 3.11765 0.58958 2.92789 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 26 1.41638 3.81769 0.34563 3.58780 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 27 3.66896 0.22262 2.89253 2.13161 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03558 3.65369 4.70424 0.59513 0.80182 1.09861 0.40547 28 2.61003 0.60805 2.69960 1.15574 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.07020 4.70424 2.83476 1.46634 0.26236 1.09861 0.40547 29 1.20097 2.09709 1.45780 1.06846 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.01924 4.65329 4.65329 1.46634 0.26236 0.26881 1.44514 30 1.16442 2.07742 1.28130 1.25538 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 31 2.11218 1.20728 2.77169 0.65882 35 U - - , 1.38629 1.38629 1.38629 1.38629 0.33807 4.70424 1.28086 1.46634 0.26236 1.09861 0.40547 32 1.23676 2.34668 2.39564 0.64841 36 U - - , 1.38629 1.38629 1.38629 1.38629 0.04263 3.52856 4.39125 0.70085 0.68550 0.06317 2.79340 33 3.63350 0.47352 3.43761 1.14372 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 34 3.79140 0.46270 3.61370 1.13663 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 35 3.56876 0.85792 3.36165 0.66731 40 U - - < 1.38629 1.38629 1.38629 1.38629 0.04162 4.70424 3.45104 1.46634 0.26236 1.09861 0.40547 36 1.17266 1.62564 1.94411 1.04823 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.10234 4.68132 2.43026 1.46634 0.26236 1.70503 0.20061 37 1.38366 1.49274 1.73190 1.05659 42 u - - < 1.38629 1.38629 1.38629 1.38629 0.58301 0.83996 4.59930 1.28832 0.32260 0.15416 1.94586 38 0.86767 2.27034 1.68546 1.23294 60 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 39 0.69398 2.54919 1.77452 1.37553 61 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 40 1.12340 2.16176 2.68351 0.71053 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02987 4.70424 3.89378 1.46634 0.26236 1.09861 0.40547 41 1.14308 1.95123 2.01229 0.90292 63 u - - _ 1.38629 1.38629 1.38629 1.38629 0.13441 4.69286 2.14890 1.46634 0.26236 0.63621 0.75352 42 1.69373 1.94058 1.20968 0.98282 64 u - - _ 1.38629 1.38629 1.38629 1.38629 1.13796 0.40138 4.59193 1.34510 0.30180 1.23598 0.34327 43 1.15958 1.86360 1.33038 1.32091 81 a - - > 1.38629 1.38629 1.38629 1.38629 0.01981 4.62462 4.62462 1.46634 0.26236 0.49946 0.93359 44 1.50621 2.08175 1.13269 1.10450 82 u - - > 1.38629 1.38629 1.38629 1.38629 0.01871 4.68132 4.68132 1.46634 0.26236 0.45183 1.01188 45 0.74939 3.51739 0.77330 3.31927 83 a - - > 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 46 1.19687 3.75064 0.43847 3.52889 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 47 1.74034 3.56873 0.27230 3.36046 85 G - - > 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 48 1.24056 2.87647 0.57298 2.40128 86 G - - , 1.38629 1.38629 1.38629 1.38629 0.02608 4.70424 4.09344 1.46634 0.26236 1.09861 0.40547 49 4.27026 0.14409 4.06908 2.27183 87 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01842 4.69659 4.69659 1.46634 0.26236 0.73517 0.65282 50 0.03985 5.28103 3.65813 4.80349 88 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 51 4.79984 3.86583 4.59565 0.04006 89 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02608 4.09344 4.70424 0.87006 0.54288 1.09861 0.40547 52 0.57621 3.56998 0.97954 3.37156 91 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 53 4.07211 1.79306 3.96295 0.22627 92 U - - ) 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 54 3.83254 0.45525 3.59534 1.15010 93 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02603 4.09624 4.70424 1.09005 0.40977 1.09861 0.40547 55 4.20236 5.24653 0.02966 4.71102 96 G - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 56 0.02852 4.87685 4.49364 4.67580 97 A - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 57 0.92180 2.34429 1.43585 1.31538 98 a - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 58 4.20236 5.24653 0.02966 4.71102 99 G - - : 1.38629 1.38629 1.38629 1.38629 0.05186 3.18253 4.70424 0.73072 0.65694 1.09861 0.40547 59 0.02852 4.87685 4.49364 4.67580 102 A - - : 1.38629 1.38629 1.38629 1.38629 0.01828 4.70424 4.70424 1.46634 0.26236 1.09861 0.40547 60 0.09185 4.11558 2.94206 3.98018 103 A - - : 1.38629 1.38629 1.38629 1.38629 0.00918 4.69514 * 1.46634 0.26236 0.00000 * //