INFERNAL1/a [1.1.5 | Sep 2023] NAME L17-Actino-Proteobacteria ACC RF03132 DESC L17-Actino-Proteobacteria ribosomal protein leader STATES 177 NODES 43 CLEN 56 W 79 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 23:57:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03132/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 408 EFFN 9.335266 CKSUM 602413625 NULL 0.000 0.000 0.000 0.000 GA 34.90 TC 35.00 NC 34.70 EFP7GF -16.8765 0.71925 ECMLC 0.47833 -10.87042 2.44422 1600000 700028 0.001714 ECMGC 0.41940 -14.55475 -0.74769 1600000 130900 0.003056 ECMLI 0.45469 -9.36110 3.95888 1600000 512255 0.002343 ECMGI 0.44444 -10.79985 1.38442 1600000 89919 0.004448 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 79 104 -7.190 -17.659 -0.010 IL 1 1 2 1 3 1 13 97 140 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 1 12 81 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 72 0 11 79 104 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 44 70 -0.021 -7.878 -7.285 -7.925 [ MATP 3 ] 1 55 C G - - MP 5 4 1 9 6 2 2 44 70 -9.958 -9.897 -0.012 -8.673 -8.953 -9.348 -4.292 -4.025 -3.157 0.302 -3.360 -5.131 3.148 -3.972 -4.224 1.236 -4.730 -1.559 0.995 -4.488 -0.886 -3.011 ML 6 4 1 9 6 1 1 43 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 43 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 40 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 1 44 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 44 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 54 c g - - MP 11 10 6 15 6 2 2 42 68 -9.958 -9.897 -0.012 -8.673 -8.953 -9.348 -3.929 -3.665 -3.981 0.334 -3.267 -4.802 2.841 -3.816 -3.952 1.697 -4.464 -0.426 1.035 -4.119 -0.686 -1.593 ML 12 10 6 15 6 1 1 41 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 6 1 1 41 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 38 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 42 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 42 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 53 g c - - MP 17 16 6 21 6 2 2 40 66 -9.958 -9.897 -0.067 -7.731 -4.759 -9.348 -3.916 -2.970 -3.855 1.201 -4.216 -4.534 1.392 -4.281 -4.123 2.881 -3.421 -0.014 0.621 -3.807 -1.296 -2.838 ML 18 16 6 21 6 1 1 39 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 39 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 36 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 40 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 40 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 52 g c - - MP 23 22 6 27 6 2 2 38 64 -9.903 -9.842 -0.241 -8.619 -2.967 -5.548 -2.335 -2.375 -2.502 1.607 -2.425 -2.813 1.584 -2.197 -2.586 1.992 -2.662 0.083 1.095 -2.621 -0.188 -1.719 ML 24 22 6 27 6 1 1 37 62 -6.326 -6.672 -1.205 -1.081 -6.522 -4.052 0.269 -0.121 -0.372 0.141 MR 25 22 6 27 6 1 1 37 63 -7.776 -6.505 -0.716 -6.483 -1.617 -4.697 0.161 -0.122 -0.103 0.046 D 26 22 6 27 6 0 0 34 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 38 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 38 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 51 g c - - MP 29 28 6 33 6 2 2 37 62 -9.740 -9.679 -0.062 -7.552 -7.741 -5.089 -2.947 -2.314 -3.055 0.709 -2.914 -3.369 2.115 -2.626 -3.142 2.274 -3.655 -0.010 1.021 -3.149 -0.322 -2.138 ML 30 28 6 33 6 1 1 35 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 35 61 -8.804 -7.533 -0.322 -7.511 -2.574 -5.725 -1.662 1.587 -2.488 -0.994 D 32 28 6 33 6 0 0 31 57 -9.710 -8.408 -4.205 -4.887 -4.905 -0.194 IL 33 33 5 33 6 1 1 36 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 36 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 50 c g - - MP 35 34 6 39 6 2 2 35 60 -9.886 -9.825 -0.042 -8.602 -6.844 -6.021 -2.367 -2.147 -2.283 1.086 -2.501 -3.364 2.099 -2.628 -2.613 1.975 -2.399 -0.036 0.883 -2.654 -0.317 -1.101 ML 36 34 6 39 6 1 1 33 58 -6.322 -6.668 -1.210 -1.077 -6.518 -4.047 0.274 -0.132 -0.364 0.140 MR 37 34 6 39 6 1 1 33 58 -7.085 -5.814 -1.441 -5.792 -0.926 -4.006 0.222 -0.363 -0.355 0.350 D 38 34 6 39 6 0 0 29 54 -10.254 -8.952 -4.749 -5.431 -5.449 -0.130 IL 39 39 5 39 6 1 1 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 34 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 49 g c - - MP 41 40 6 45 6 2 2 33 58 -9.865 -9.804 -0.050 -7.837 -7.234 -5.588 -3.418 -2.621 -3.429 1.626 -3.813 -3.037 1.105 -2.237 -3.664 2.802 -4.081 0.004 0.273 -3.418 -1.336 -2.355 ML 42 40 6 45 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 31 56 -7.165 -5.894 -1.314 -5.872 -1.006 -4.085 0.323 -0.217 -0.443 0.206 D 44 40 6 45 6 0 0 27 52 -10.485 -9.183 -4.980 -5.662 -5.680 -0.110 IL 45 45 5 45 6 1 1 32 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 32 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 48 G C - - MP 47 46 6 51 6 2 2 31 56 -9.838 -9.777 -0.083 -8.553 -8.833 -4.357 -3.849 -2.855 -3.775 0.873 -3.344 -3.706 1.254 -3.558 -4.066 3.056 -4.420 0.123 0.220 -3.715 -1.543 -2.763 ML 48 46 6 51 6 1 1 29 54 -6.306 -6.652 -1.231 -1.061 -6.502 -4.031 0.290 -0.368 -0.280 0.237 MR 49 46 6 51 6 1 1 29 54 -7.109 -5.838 -1.401 -5.816 -0.950 -4.030 0.199 0.023 -0.465 0.152 D 50 46 6 51 6 0 0 26 51 -10.751 -9.449 -5.246 -5.928 -5.946 -0.091 IL 51 51 5 51 6 1 1 30 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 30 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 47 c g - - MP 53 52 6 57 4 2 2 29 54 -1.334 -3.592 -0.965 -6.919 -3.830 -3.411 -3.858 0.912 -3.268 -4.652 2.628 -3.767 -3.874 1.984 -4.360 -0.668 0.897 -3.963 -0.514 -2.685 ML 54 52 6 57 4 1 1 26 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 25 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 25 51 -6.687 -1.340 -1.202 -2.639 IL 57 57 5 57 4 1 1 28 53 -2.544 -0.420 -3.733 -7.470 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 27 52 -1.048 -0.975 -7.033 0.000 0.000 0.000 0.000 [ MATL 12 ] 17 - g - - - ML 59 58 6 61 3 1 1 15 34 -9.526 -0.007 -8.180 0.353 -0.841 0.654 -0.759 D 60 58 6 61 3 0 0 16 34 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - a - - - ML 62 61 3 64 3 1 1 14 32 -9.526 -0.007 -8.180 0.428 -0.161 -0.488 0.067 D 63 61 3 64 3 0 0 15 33 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 19 - c - - - ML 65 64 3 67 3 1 1 12 30 -9.526 -0.064 -4.577 -0.440 0.977 -1.183 -0.227 D 66 64 3 67 3 0 0 13 32 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 20 - C - - - ML 68 67 3 70 2 1 1 1 1 * 0.000 -0.732 1.023 -0.717 -0.402 D 69 67 3 70 2 0 0 0 0 * 0.000 IL 70 70 3 70 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 16 ] - - - - - - E 71 70 3 -1 0 0 0 0 0 [ BEGR 17 ] - - - - - - S 72 3 1 73 3 0 0 48 67 -9.526 -0.050 -4.921 IL 73 73 2 73 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 56 - a - - - ML 74 73 2 76 3 1 1 48 67 -9.483 -0.176 -3.143 0.468 -0.441 0.147 -0.371 D 75 73 2 76 3 0 0 47 66 -7.028 -2.541 -0.285 IL 76 76 3 76 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 57 - u - - - ML 77 76 3 79 3 1 1 47 66 -9.316 -0.131 -3.553 0.211 -0.020 -0.816 0.366 D 78 76 3 79 3 0 0 45 64 -8.411 -3.924 -0.103 IL 79 79 3 79 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 58 - a - - - ML 80 79 3 82 5 1 1 46 65 -1.892 -0.471 -8.029 -8.241 -9.132 0.971 -0.545 -1.270 -0.089 D 81 79 3 82 5 0 0 44 63 -7.019 -0.156 -6.280 -4.655 -4.567 IL 82 82 3 82 5 1 1 46 65 -2.040 -0.464 -5.772 -7.604 -6.878 0.000 0.000 0.000 0.000 [ MATP 21 ] 63 96 C G - - MP 83 82 3 87 6 2 2 44 63 -9.958 -9.897 -0.012 -8.673 -8.953 -9.348 -5.674 -5.693 -5.447 -1.931 -1.192 -2.098 3.730 -3.509 -5.532 -1.803 -5.770 -3.720 -0.096 -5.809 -2.057 -4.401 ML 84 82 3 87 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 3 87 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 3 87 6 0 0 41 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 64 95 u a - - MP 89 88 6 93 6 2 2 42 61 -9.958 -9.897 -0.034 -5.797 -8.953 -9.348 -4.251 -4.055 -4.277 0.388 -3.013 -5.098 2.179 -3.920 -4.182 0.409 -4.694 -1.510 2.844 -4.459 -0.609 -2.977 ML 90 88 6 93 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 65 94 G C - - MP 95 94 6 99 4 2 2 40 59 -8.547 -3.748 -0.165 -5.014 -3.956 -2.836 -2.034 1.144 -4.669 -2.593 -0.126 -3.208 -3.704 3.271 -4.528 -0.544 0.201 -3.012 -2.046 -2.868 ML 96 94 6 99 4 1 1 40 59 -4.111 -4.294 -0.496 -2.457 0.395 -0.048 -0.587 0.074 MR 97 94 6 99 4 1 1 40 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 39 57 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 42 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 40 58 -1.868 -1.143 -1.871 0.000 0.000 0.000 0.000 [ MATL 24 ] 66 - A - - - ML 101 100 6 103 5 1 1 38 57 -4.311 -0.222 -8.228 -3.808 -5.845 1.443 -0.889 -1.906 -1.079 D 102 100 6 103 5 0 0 37 56 -3.588 -0.432 -5.391 -3.766 -3.679 IL 103 103 3 103 5 1 1 38 57 -2.899 -0.391 -3.791 -6.410 -5.684 0.000 0.000 0.000 0.000 [ MATP 25 ] 68 91 C G - - MP 104 103 3 108 6 2 2 37 56 -9.870 -9.809 -0.012 -8.586 -8.865 -9.260 -8.482 -8.651 -7.244 -4.866 -5.587 -4.698 3.964 -7.274 -8.041 -4.768 -7.149 -6.874 -3.012 -8.414 -3.452 -6.837 ML 105 103 3 108 6 1 1 36 54 -6.381 -6.727 -1.136 -1.136 -6.577 -4.107 0.207 0.008 -0.456 0.152 MR 106 103 3 108 6 1 1 35 54 -7.936 -6.665 -1.995 -6.643 -0.534 -4.857 -0.201 -0.974 0.796 -0.176 D 107 103 3 108 6 0 0 33 52 -9.444 -8.142 -3.939 -4.622 -4.639 -0.236 IL 108 108 5 108 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 69 90 c g - - MP 110 109 6 114 6 2 2 35 54 -9.888 -9.827 -0.012 -8.603 -8.883 -9.278 -2.610 -2.736 -2.778 1.800 -1.004 -3.628 2.088 -2.962 -2.811 0.807 -3.373 -1.076 1.435 -2.925 0.461 -1.249 ML 111 109 6 114 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 34 52 -7.811 -6.540 -0.694 -6.519 -1.652 -4.732 0.965 -0.850 -0.780 -0.135 D 113 109 6 114 6 0 0 31 50 -9.444 -8.142 -3.939 -4.622 -4.639 -0.236 IL 114 114 5 114 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 70 89 C G - - MP 116 115 6 120 6 2 2 33 52 -9.943 -9.882 -0.012 -8.658 -8.938 -9.333 -4.697 -4.513 -4.632 -0.472 -2.736 -5.336 3.330 -4.186 -4.553 0.170 -5.009 -1.210 0.539 -4.859 0.725 -3.331 ML 117 115 6 120 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 29 48 -9.444 -8.142 -3.939 -4.622 -1.838 -0.714 IL 120 120 5 120 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 71 88 C G - - MP 122 121 6 126 6 2 2 31 50 -9.943 -9.882 -0.012 -8.658 -8.938 -9.333 -6.525 -6.625 -5.916 -2.750 -4.340 -6.111 3.840 -5.295 -6.045 -1.223 -6.118 -4.698 -0.828 -6.447 -1.729 -4.837 ML 123 121 6 126 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 30 48 -7.269 -5.998 -1.172 -5.976 -1.110 -4.189 0.841 -0.721 -0.448 -0.203 D 125 121 6 126 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 72 87 G C - - MP 128 127 6 132 6 2 2 29 48 -9.958 -9.897 -0.012 -8.673 -8.953 -9.348 -6.532 -2.370 -6.863 -0.599 -7.847 -5.660 -2.712 -7.260 -5.615 3.845 -5.868 -1.541 -2.991 -5.737 -4.856 -5.753 ML 129 127 6 132 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 73 86 G C - - MP 134 133 6 138 6 2 2 27 46 -9.958 -9.897 -0.012 -8.673 -8.953 -9.348 -7.413 -4.478 -8.481 -1.772 -8.780 -5.748 -3.469 -8.447 -5.830 3.926 -6.056 -2.345 -3.833 -6.122 -5.765 -7.330 ML 135 133 6 138 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 74 85 U G - - MP 140 139 6 144 4 2 2 25 44 -8.582 -8.789 -0.017 -7.203 -6.346 -6.343 -5.736 -2.598 -4.170 -5.961 0.119 -5.039 -5.801 -2.654 -5.961 -4.355 -0.891 -6.289 3.783 -4.621 ML 141 139 6 144 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 143 139 6 144 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 144 144 5 144 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 145 145 6 145 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 75 - A - - - ML 146 145 6 148 3 1 1 22 41 -9.526 -0.007 -8.180 1.912 -4.132 -3.355 -3.622 D 147 145 6 148 3 0 0 22 41 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 76 - C - - - ML 149 148 3 151 3 1 1 21 40 -9.526 -0.007 -8.180 -4.756 1.952 -5.318 -3.836 D 150 148 3 151 3 0 0 21 40 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 77 - C - - - ML 152 151 3 154 3 1 1 20 39 -9.526 -0.007 -8.180 -4.756 1.952 -5.318 -3.836 D 153 151 3 154 3 0 0 20 38 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 78 - U - - - ML 155 154 3 157 3 1 1 19 37 -9.526 -0.007 -8.180 -4.204 -3.830 -5.005 1.943 D 156 154 3 157 3 0 0 19 37 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 79 - G - - - ML 158 157 3 160 3 1 1 18 36 -9.526 -0.007 -8.180 -2.113 -1.881 1.750 -2.904 D 159 157 3 160 3 0 0 18 36 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 80 - A - - - ML 161 160 3 163 3 1 1 16 35 -9.526 -0.007 -8.180 1.674 -3.557 -0.679 -3.318 D 162 160 3 163 3 0 0 17 35 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 81 - U - - - ML 164 163 3 166 3 1 1 15 34 -9.526 -0.007 -8.180 -2.653 -0.079 -3.468 1.487 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 82 - A - - - ML 167 166 3 169 3 1 1 14 32 -9.526 -0.007 -8.180 1.891 -2.934 -3.675 -3.598 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 83 - C - - - ML 170 169 3 172 3 1 1 12 30 -9.526 -0.007 -8.180 -4.756 1.952 -5.318 -3.836 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 84 - G - - - ML 173 172 3 175 2 1 1 1 1 * 0.000 -4.177 -5.699 1.961 -4.910 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME L17-Actino-Proteobacteria ACC RF03132 DESC L17-Actino-Proteobacteria ribosomal protein leader LENG 56 MAXL 110 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 23:57:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03132/CM NSEQ 408 EFFN 89.639099 CKSUM 602413625 STATS LOCAL MSV -7.6948 0.71925 STATS LOCAL VITERBI -8.2779 0.71925 STATS LOCAL FORWARD -3.3441 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.82924 1.04531 1.08066 1.90712 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 0.00000 * 1 3.07590 0.28295 1.90339 2.97139 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 2 3.48093 0.50696 1.29732 2.36838 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 3 2.12742 1.65835 0.52430 2.31837 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.06496 6.82526 2.78368 1.46634 0.26236 1.09861 0.40547 4 1.42164 1.53449 0.91495 1.94785 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.30356 6.76262 1.34455 1.46634 0.26236 0.03454 3.38297 5 3.21844 0.96458 0.76803 2.16355 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.06405 6.54589 2.80341 1.46634 0.26236 0.16539 1.88098 6 2.13679 0.97304 0.91551 2.26602 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.03980 6.74164 3.27455 1.46634 0.26236 2.48817 0.08672 7 1.51175 1.76317 0.58604 2.96723 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04675 6.71087 3.11323 1.46634 0.26236 2.22928 0.11385 8 2.97427 1.68227 0.33468 3.04912 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.09406 6.67936 2.42453 1.46634 0.26236 2.80531 0.06239 9 2.33645 0.63835 1.14719 2.85361 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.62844 0.76527 6.59729 0.16061 1.90803 0.01054 4.55762 10 1.08640 2.07021 0.77191 2.59988 17 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 11 1.02911 1.41618 1.75297 1.48379 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 12 1.90340 0.50468 2.36734 1.87398 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01010 6.82526 4.71420 1.46634 0.26236 1.09861 0.40547 13 2.35948 0.46317 1.82397 2.16406 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.90528 0.69476 2.33950 0.66267 0.72459 2.32796 0.10258 14 3.38827 1.24607 0.59565 2.06046 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.11757 6.71722 2.20993 1.46634 0.26236 0.41790 1.07419 15 3.11217 0.42026 1.72596 2.11511 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68450 6.68450 1.46634 0.26236 1.34102 0.30324 16 3.19128 0.67142 1.88276 1.21831 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.00653 6.72301 5.23822 1.46634 0.26236 1.43569 0.27174 17 2.99708 1.11803 0.87630 1.57588 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.00236 6.74396 6.74396 1.46634 0.26236 0.56874 0.83526 18 2.80504 0.64675 1.13331 2.36673 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00633 6.79159 5.26171 1.46634 0.26236 0.06158 2.81810 19 2.22632 1.13206 1.39383 1.13450 52 c - - > 1.38629 1.38629 1.38629 1.38629 0.00218 6.82133 6.82133 1.46634 0.26236 0.35986 1.19659 20 2.49718 0.63077 1.55184 1.75074 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 21 2.86162 1.49481 0.48510 2.27403 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 22 3.06498 1.94810 0.26863 3.07104 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03747 6.82526 3.33273 1.46634 0.26236 1.09861 0.40547 23 0.99015 1.67791 1.13625 2.11452 56 a - - - 1.38629 1.38629 1.38629 1.38629 0.14077 6.79004 2.03880 1.46634 0.26236 3.55160 0.02910 24 1.25581 1.29240 2.17833 1.11684 57 u - - - 1.38629 1.38629 1.38629 1.38629 0.10571 6.65186 2.31236 1.46634 0.26236 5.00794 0.00671 25 0.53015 1.83435 2.97185 1.60664 58 A - - - 1.38629 1.38629 1.38629 1.38629 0.42939 1.05652 6.54901 0.31706 1.30300 0.00892 4.72413 26 6.29212 0.05648 6.28754 2.97193 63 C - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 27 2.97011 1.34254 3.05178 0.44590 64 U - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 28 2.08334 3.10995 0.27660 2.62381 65 G - - < 1.38629 1.38629 1.38629 1.38629 0.08960 6.82526 2.46965 1.46634 0.26236 1.09861 0.40547 29 0.26055 2.02925 3.56576 2.66404 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.18082 2.81558 2.24863 0.03913 3.26049 0.02535 3.68781 30 5.88812 0.02636 6.03916 3.86981 68 C - - < 1.38629 1.38629 1.38629 1.38629 0.00240 6.72473 6.72473 1.46634 0.26236 1.92310 0.15800 31 1.15297 1.05575 2.59047 1.34176 69 c - - < 1.38629 1.38629 1.38629 1.38629 0.00237 6.73941 6.73941 1.46634 0.26236 0.26842 1.44640 32 6.12218 0.20068 2.92526 2.07162 70 C - - < 1.38629 1.38629 1.38629 1.38629 0.00221 6.80714 6.80714 1.46634 0.26236 2.97252 0.05253 33 6.24570 0.05226 3.55722 3.88910 71 C - - < 1.38629 1.38629 1.38629 1.38629 0.00221 6.80714 6.80714 1.46634 0.26236 0.10797 2.27937 34 3.19112 6.61444 0.04487 6.55978 72 G - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 35 5.58514 6.63489 0.00643 6.61491 73 G - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 36 6.18244 4.68115 6.14135 0.01358 74 U - - < 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 37 0.02409 6.37796 4.42656 4.59082 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 38 7.06465 0.00323 7.41358 6.34026 76 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 39 7.06465 0.00323 7.41358 6.34026 77 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 40 7.71710 7.01963 8.52710 0.00154 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 41 4.00962 2.58512 0.10146 5.82455 79 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 42 0.17689 6.40472 1.84070 6.33825 80 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 43 6.13906 1.34911 6.70712 0.30496 81 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 44 0.03115 3.60695 6.40626 6.27308 82 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 45 7.06465 0.00323 7.41358 6.34026 83 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 46 6.33961 7.56809 0.00333 6.86772 84 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 47 5.21310 6.24783 0.01018 5.89767 85 G - - > 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 48 6.33370 0.00899 6.37141 5.20869 86 C - - > 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 49 6.13326 0.04339 6.22743 3.26176 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 50 3.65496 3.55807 0.05928 5.74508 88 G - - > 1.38629 1.38629 1.38629 1.38629 0.02034 6.82526 3.96072 1.46634 0.26236 1.09861 0.40547 51 4.33896 3.44881 0.07272 3.67683 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.00221 6.80714 6.80714 1.46634 0.26236 2.97252 0.05253 52 1.51904 2.69935 0.96335 1.10196 90 g - - > 1.38629 1.38629 1.38629 1.38629 0.00221 6.80714 6.80714 1.46634 0.26236 2.97252 0.05253 53 4.67127 4.21794 0.03700 4.40321 91 G - - > 1.38629 1.38629 1.38629 1.38629 0.11046 2.57756 3.55378 0.13083 2.09855 0.10797 2.27937 54 2.77071 0.23873 3.27881 2.18850 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.00223 6.79788 6.79788 1.46634 0.26236 0.07445 2.63465 55 0.46806 3.27585 1.29307 2.78753 95 A - - > 1.38629 1.38629 1.38629 1.38629 0.00217 6.82526 6.82526 1.46634 0.26236 1.09861 0.40547 56 2.29643 3.49155 0.15216 4.59716 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.00109 6.82418 * 1.46634 0.26236 0.00000 * //