INFERNAL1/a [1.1.5 | Sep 2023] NAME L31-Corynebacteriaceae ACC RF03129 DESC L31-Corynebacteriaceae ribosomal protein leader STATES 196 NODES 50 CLEN 64 W 217 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 00:42:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03129/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 113 EFFN 3.996796 CKSUM 1949880758 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 39.50 NC 35.30 EFP7GF -13.1457 0.71916 ECMLC 0.57640 -10.59966 0.64211 1600000 782158 0.001534 ECMGC 0.39773 -18.27654 -4.31526 1600000 103189 0.003876 ECMLI 0.53412 -9.38046 1.94795 1600000 509278 0.002356 ECMGI 0.41717 -12.57568 -0.24977 1600000 68426 0.005846 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 217 384 -7.487 -8.732 -0.052 -5.186 IL 1 1 2 1 4 1 17 219 386 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 219 386 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 186 - A - - MR 3 2 3 5 3 1 17 218 385 -8.949 -0.012 -7.267 1.822 -3.111 -2.290 -2.787 D 4 2 3 5 3 0 13 215 382 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 218 385 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 185 - G - - MR 6 5 3 8 3 1 16 217 384 -8.949 -0.025 -6.073 -2.822 -4.193 1.895 -3.557 D 7 5 3 8 3 0 12 214 381 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 16 217 384 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 184 - G - - MR 9 8 3 11 3 1 16 216 383 -8.937 -0.012 -7.254 -2.800 -4.169 1.893 -3.534 D 10 8 3 11 3 0 11 214 381 -6.534 -1.321 -0.764 IR 11 11 3 11 3 1 15 216 383 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 183 - G - - MR 12 11 3 14 3 1 15 215 382 -8.949 -0.012 -7.267 -2.167 -3.776 1.846 -3.189 D 13 11 3 14 3 0 10 212 380 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 14 215 382 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 182 - A - - MR 15 14 3 17 3 1 14 214 381 -8.949 -0.048 -5.015 1.889 -3.620 -3.138 -3.288 D 16 14 3 17 3 0 10 212 379 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 14 214 381 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 181 - G - - MR 18 17 3 20 3 1 13 213 380 -8.913 -0.013 -7.231 -0.694 -1.944 1.368 -0.887 D 19 17 3 20 3 0 9 211 378 -6.777 -1.020 -1.006 IR 20 20 3 20 3 1 13 213 380 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 180 - U - - MR 21 20 3 23 3 1 12 212 379 -8.949 -0.012 -7.267 -2.676 -2.477 -3.449 1.837 D 22 20 3 23 3 0 8 209 376 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 12 212 379 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 179 - C - - MR 24 23 3 26 3 1 11 211 378 -8.949 -0.012 -7.267 -3.229 1.864 -4.016 -2.377 D 25 23 3 26 3 0 7 208 375 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 11 211 378 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 178 - C - - MR 27 26 3 29 3 1 10 210 377 -8.949 -0.012 -7.267 -3.229 1.864 -4.016 -2.377 D 28 26 3 29 3 0 6 207 375 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 10 210 377 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 177 - u - - MR 30 29 3 32 3 1 9 209 376 -8.949 -0.012 -7.267 0.071 -0.128 -1.358 0.717 D 31 29 3 32 3 0 5 207 374 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 9 209 376 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 176 - A - - MR 33 32 3 35 3 1 8 208 375 -8.949 -0.012 -7.267 1.592 -1.662 -1.989 -1.262 D 34 32 3 35 3 0 5 206 373 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 8 208 375 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 175 - A - - MR 36 35 3 38 3 1 7 207 374 -8.949 -0.012 -7.267 1.389 -1.156 -1.133 -1.071 D 37 35 3 38 3 0 4 205 372 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 7 207 374 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 174 - C - - MR 39 38 3 41 3 1 6 206 373 -8.949 -0.025 -6.060 -1.454 1.577 -2.695 -1.006 D 40 38 3 41 3 0 4 204 371 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 6 206 373 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 173 - u - - MR 42 41 3 44 3 1 6 205 372 -8.937 -0.430 -1.968 0.056 -0.589 -1.178 0.890 D 43 41 3 44 3 0 3 203 370 -6.536 -1.714 -0.547 IR 44 44 3 44 3 1 7 206 373 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 172 - u - - MR 45 44 3 47 5 1 7 204 371 -3.066 -0.212 -7.067 -7.279 -8.170 0.023 -0.102 -0.742 0.541 D 46 44 3 47 5 0 3 203 370 -6.838 -0.215 -4.464 -5.895 -3.890 IR 47 47 3 47 5 1 5 204 371 -2.845 -0.349 -6.356 -4.524 -5.630 0.000 0.000 0.000 0.000 [ MATP 16 ] 1 170 A U - - MP 48 47 3 52 6 2 6 203 370 -9.399 -9.338 -0.017 -8.115 -8.395 -8.790 -4.996 -2.492 -4.811 3.770 -6.212 -7.096 -1.880 -4.846 -4.849 -0.173 -5.458 -1.183 -2.084 -5.943 -3.765 -3.710 ML 49 47 3 52 6 1 3 201 368 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 3 201 368 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 198 365 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 4 202 369 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 4 202 369 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 2 169 C G - - MP 54 53 6 58 6 2 4 201 368 -9.399 -9.338 -0.103 -4.040 -8.395 -8.790 -5.948 -5.972 -5.382 -2.140 -3.865 -5.608 3.825 -4.821 -5.517 -2.035 -5.587 -3.983 -0.540 -5.919 -1.646 -4.325 ML 55 53 6 58 6 1 2 199 366 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 2 200 367 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 197 364 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 201 368 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 200 368 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 3 168 U A - - MP 60 59 6 64 4 2 4 199 366 -7.319 -8.565 -0.059 -5.018 -3.728 -3.681 -3.741 -0.159 -3.027 -4.455 1.161 -3.617 -3.753 -0.012 -4.220 -1.760 3.164 -3.970 -0.789 0.456 ML 61 59 6 64 4 1 1 197 364 -3.981 -6.105 -2.865 -0.349 -0.424 0.885 -1.165 -0.057 MR 62 59 6 64 4 1 1 198 365 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 196 363 -12.737 -14.007 -2.036 -0.404 IL 64 64 5 64 4 1 1 198 365 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 2 199 366 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 167 - A - - MR 66 65 6 68 5 1 3 197 365 -7.502 -0.029 -7.317 -7.529 -8.421 1.036 -1.040 -1.314 0.086 D 67 65 6 68 5 0 0 196 363 -6.154 -0.396 -3.467 -5.211 -3.206 IR 68 68 3 68 5 1 1 197 364 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 4 166 C G - - MP 69 68 3 73 6 2 4 196 364 -9.396 -9.335 -0.017 -8.111 -8.391 -8.786 -4.841 -4.845 -4.488 -0.959 -3.089 -4.866 3.479 -3.912 -4.517 -0.792 -4.789 -2.809 1.266 -4.862 -0.595 -3.323 ML 70 68 3 73 6 1 1 194 361 -6.305 -6.651 -1.233 -1.059 -6.500 -4.030 0.295 -0.181 -0.331 0.133 MR 71 68 3 73 6 1 1 194 361 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 190 357 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 196 363 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 195 362 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 5 165 g c - - MP 75 74 6 79 6 2 4 194 362 -9.399 -9.338 -0.017 -8.115 -8.395 -8.790 -4.005 -2.794 -3.996 2.512 -4.889 -4.919 -0.295 -4.379 -4.041 2.788 -4.479 -0.006 -0.545 -4.135 -2.256 -2.869 ML 76 74 6 79 6 1 1 192 360 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 192 359 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 189 356 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 194 361 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 193 361 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 6 164 G C - - MP 81 80 6 85 6 2 3 193 360 -9.399 -9.338 -0.017 -8.115 -8.395 -8.790 -5.458 -3.495 -5.624 0.137 -6.479 -5.086 -1.577 -5.980 -4.854 3.750 -5.153 -1.207 -1.884 -4.979 -3.656 -4.492 ML 82 80 6 85 6 1 1 191 358 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 190 357 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 188 355 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 192 359 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 192 359 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 7 163 G C - - MP 87 86 6 91 4 2 2 191 358 -7.614 -7.821 -0.033 -6.236 -5.939 -3.685 -6.266 -0.654 -6.881 -5.135 -1.951 -6.513 -5.028 3.829 -5.298 -1.454 -2.314 -5.227 -4.072 -5.126 ML 88 86 6 91 4 1 1 189 357 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 188 355 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 187 354 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 190 357 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 190 357 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 8 - C - - - ML 93 92 6 95 3 1 1 189 356 -8.592 -0.013 -7.246 -2.136 1.612 -3.017 -0.755 D 94 92 6 95 3 0 0 186 353 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 189 356 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 9 - A - - - ML 96 95 3 98 3 1 1 188 355 -8.592 -0.013 -7.246 1.628 -2.457 -1.041 -2.058 D 97 95 3 98 3 0 0 185 352 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 188 355 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 10 - C - - - ML 99 98 3 101 3 1 1 187 354 -8.592 -0.013 -7.246 -3.229 1.864 -4.016 -2.377 D 100 98 3 101 3 0 0 184 351 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 187 354 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 11 - G - - - ML 102 101 3 104 3 1 1 186 353 -8.592 -0.013 -7.246 -2.822 -4.193 1.895 -3.557 D 103 101 3 104 3 0 0 183 350 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 186 353 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 12 - A - - - ML 105 104 3 107 3 1 1 185 352 -8.949 -0.012 -7.267 1.801 -2.999 -2.100 -2.669 D 106 104 3 107 3 0 0 183 350 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 185 352 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 162 - A - - MR 108 107 3 110 3 1 1 184 351 -8.949 -0.012 -7.267 1.636 -2.471 -1.073 -2.075 D 109 107 3 110 3 0 0 181 348 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 184 351 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 161 - G - - MR 111 110 3 113 3 1 1 183 350 -8.949 -0.012 -7.267 -2.822 -4.193 1.895 -3.557 D 112 110 3 113 3 0 0 180 347 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 183 350 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 160 - C - - MR 114 113 3 116 3 1 1 182 349 -8.949 -0.012 -7.267 -3.229 1.864 -4.016 -2.377 D 115 113 3 116 3 0 0 179 346 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 182 349 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 159 - C - - MR 117 116 3 119 3 1 1 181 348 -8.949 -0.012 -7.267 -0.930 1.253 -1.130 -0.655 D 118 116 3 119 3 0 0 178 345 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 181 348 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 158 - A - - MR 120 119 3 122 5 1 1 180 347 -7.655 -0.026 -7.470 -7.682 -8.574 1.769 -2.854 -1.843 -2.512 D 121 119 3 122 5 0 0 177 344 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 179 347 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 13 157 u a - - MP 123 122 3 127 6 2 2 179 346 -9.399 -9.338 -0.017 -8.115 -8.395 -8.790 -3.973 -3.911 -3.902 -0.115 -2.883 -4.540 2.237 -3.570 -3.888 0.073 -4.315 -1.848 2.888 -4.145 -0.537 -1.715 ML 124 122 3 127 6 1 1 176 343 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 176 343 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 170 337 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 178 345 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 178 345 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 14 156 C G - - MP 129 128 6 133 6 2 2 177 344 -9.399 -9.338 -0.017 -8.115 -8.395 -8.790 -4.569 -4.517 -4.359 -0.627 -2.375 -4.864 3.456 -3.891 -4.363 -0.203 -4.704 -2.420 0.904 -4.668 -0.353 -3.184 ML 130 128 6 133 6 1 1 174 341 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 174 341 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 167 335 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 176 343 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 176 343 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 15 155 c g - - MP 135 134 6 139 6 2 2 175 342 -9.399 -9.338 -0.050 -8.115 -7.404 -5.528 -2.147 -2.292 -2.322 0.961 -1.504 -3.171 2.296 -2.289 -1.999 0.994 -2.428 -0.750 1.698 -2.296 0.022 -1.488 ML 136 134 6 139 6 1 1 172 339 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 172 339 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 165 332 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 174 341 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 174 341 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 16 154 c g - - MP 141 140 6 145 6 2 2 173 340 -9.367 -9.306 -0.028 -8.082 -8.362 -6.734 -1.893 -1.490 -2.077 1.121 -2.027 -2.908 1.646 -2.199 -2.139 1.618 -2.003 -0.069 1.499 -2.206 0.284 -1.071 ML 142 140 6 145 6 1 1 170 337 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 170 337 -7.046 -5.775 -1.684 -5.753 -0.887 -3.269 0.276 -0.366 -0.296 0.262 D 144 140 6 145 6 0 0 163 330 -9.537 -8.235 -4.032 -4.714 -4.732 -0.220 IL 145 145 5 145 6 1 1 172 339 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 172 339 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 17 153 c g - - MP 147 146 6 151 6 2 2 171 338 -9.356 -9.296 -0.054 -7.342 -6.101 -6.284 -2.164 -2.302 -2.336 0.871 -1.583 -3.184 2.264 -1.871 -2.375 1.111 -2.122 -0.743 1.557 -2.482 0.421 -1.374 ML 148 146 6 151 6 1 1 168 335 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 168 335 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 161 328 -9.733 -8.431 -4.228 -4.910 -4.928 -0.190 IL 151 151 5 151 6 1 1 170 337 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 170 337 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 18 152 g c - - MP 153 152 6 157 6 2 2 169 336 -9.321 -9.260 -0.081 -8.036 -7.556 -4.573 -2.374 -1.935 -2.501 1.356 -2.608 -2.678 1.237 -2.872 -2.616 2.311 -3.113 0.441 0.890 -2.343 -0.061 -1.358 ML 154 152 6 157 6 1 1 166 333 -6.305 -6.651 -1.233 -1.060 -6.501 -4.030 0.518 -0.489 -0.203 -0.019 MR 155 152 6 157 6 1 1 166 333 -7.199 -5.928 -1.491 -5.906 -0.871 -4.120 0.480 -0.253 -0.446 0.046 D 156 152 6 157 6 0 0 159 326 -9.911 -8.610 -4.407 -5.089 -5.106 -0.167 IL 157 157 5 157 6 1 1 168 335 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 168 335 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 19 151 c g - - MP 159 158 6 163 6 2 2 167 334 -3.168 -4.279 -0.510 -7.988 -8.268 -2.968 -3.001 -2.872 -3.098 0.957 -2.559 -3.919 2.522 -3.067 -2.678 1.441 -3.621 -0.769 1.402 -3.238 0.068 -2.035 ML 160 158 6 163 6 1 1 163 330 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 163 330 -3.815 -5.853 -1.638 -5.831 -0.965 -4.045 0.285 -0.599 0.263 -0.117 D 162 158 6 163 6 0 0 158 325 -2.353 -9.123 -4.147 -5.602 -5.620 -0.504 IL 163 163 5 163 6 1 1 170 338 -0.618 -2.069 -3.394 -7.277 -8.053 -7.714 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 168 335 -0.618 -1.660 -8.478 -6.646 -5.701 0.000 0.000 0.000 0.000 [ MATP 41 ] 34 123 g c - - MP 165 164 6 169 6 2 2 166 333 -9.119 -9.059 -0.021 -7.835 -8.115 -8.510 -2.911 -2.473 -2.972 1.332 -2.786 -3.742 1.844 -3.144 -3.064 2.172 -3.540 -0.007 1.162 -3.042 -0.330 -1.965 ML 166 164 6 169 6 1 1 158 325 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 156 323 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 135 301 -11.267 -9.965 -5.762 -6.444 -6.462 -0.063 IL 169 169 5 169 6 1 1 164 331 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 164 331 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 35 122 g c - - MP 171 170 6 175 4 2 2 164 331 -0.865 -7.186 -1.240 -5.600 -2.926 -2.502 -2.985 1.367 -2.774 -3.759 1.774 -3.144 -3.076 2.168 -3.555 -0.228 1.350 -3.058 -0.397 -1.972 ML 172 170 6 175 4 1 1 145 312 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 138 305 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 129 292 -6.710 -1.050 -1.516 -2.662 IL 175 175 5 175 4 1 1 167 334 -0.159 -3.508 -6.012 -9.749 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 128 267 -0.191 -3.046 -8.515 0.000 0.000 0.000 0.000 [ MATL 43 ] 69 - a - - - ML 177 176 6 179 3 1 1 18 37 -8.592 -0.013 -7.246 0.516 -0.023 -0.875 0.058 D 178 176 6 179 3 0 0 18 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 70 - a - - - ML 180 179 3 182 3 1 1 17 36 -8.592 -0.013 -7.246 0.400 -0.327 -0.256 0.064 D 181 179 3 182 3 0 0 17 35 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 71 - u - - - ML 183 182 3 185 3 1 1 16 34 -8.592 -0.102 -3.931 0.140 -0.244 -0.443 0.399 D 184 182 3 185 3 0 0 15 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 72 - a - - - ML 186 185 3 188 3 1 1 14 33 -8.504 -0.196 -3.010 0.171 -0.356 -0.009 0.137 D 187 185 3 188 3 0 0 14 32 -7.056 -2.569 -0.279 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 73 - a - - - ML 189 188 3 191 3 1 1 13 31 -8.325 -0.264 -2.608 0.343 -0.437 -0.381 0.293 D 190 188 3 191 3 0 0 12 30 -7.947 -3.460 -0.144 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 74 - a - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 0.433 -0.673 -0.554 0.424 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME L31-Corynebacteriaceae ACC RF03129 DESC L31-Corynebacteriaceae ribosomal protein leader LENG 64 MAXL 270 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 00:42:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03129/CM NSEQ 113 EFFN 8.210846 CKSUM 1949880758 STATS LOCAL MSV -7.8165 0.71916 STATS LOCAL VITERBI -8.8071 0.71916 STATS LOCAL FORWARD -3.7309 0.71916 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36335 1.29700 1.29990 1.61803 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 0.00000 * 1 0.05393 4.82985 3.39035 4.52677 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 2 4.73098 0.04611 4.74382 3.59204 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 3 3.27915 1.92168 3.26122 0.25149 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 4 3.87467 0.23447 3.75645 1.80252 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 5 0.80630 3.48097 0.72385 3.27451 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 6 2.83682 4.43376 0.08719 4.34138 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 7 3.63724 4.65919 0.04664 4.62818 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 8 3.63628 0.17141 4.23863 2.14773 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 9 0.17767 3.78785 2.17642 3.62359 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 10 4.54590 0.03854 4.95731 3.90396 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 11 4.14940 5.18626 0.03133 4.65855 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 12 0.07629 4.18789 3.19841 4.04877 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 13 3.38523 1.23434 3.15637 0.45804 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 14 3.56584 0.24119 3.04989 1.97566 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 15 1.92493 0.95408 1.74904 1.22075 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.07040 4.77044 2.82167 1.46634 0.26236 1.09861 0.40547 16 1.71043 1.48197 1.25155 1.18430 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03475 4.71806 3.68010 1.46634 0.26236 2.19945 0.11750 17 2.04473 0.95378 1.67338 1.21170 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.07328 4.70164 2.78739 1.46634 0.26236 2.38357 0.09675 18 1.63130 1.82033 0.82108 1.59752 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.09390 4.64771 2.52518 1.46634 0.26236 0.79510 0.60063 19 2.04885 0.81904 1.59569 1.48063 19 c - - < 1.38629 1.38629 1.38629 1.38629 0.94216 1.17618 1.19812 1.42913 0.27380 1.98665 0.14752 20 1.67694 1.39001 0.98055 1.66666 34 g - - < 1.38629 1.38629 1.38629 1.38629 0.07080 4.31300 2.90122 1.46634 0.26236 3.83529 0.02183 21 1.64470 1.46533 1.02743 1.52324 35 g - - < 1.38629 1.38629 1.38629 1.38629 1.20459 0.37657 4.27055 2.45671 0.08961 0.04132 3.20701 22 0.98274 1.34148 2.11346 1.41289 69 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 23 1.08548 1.60210 1.54335 1.39787 70 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 24 1.31014 1.54962 1.69239 1.09718 71 u - - _ 1.38629 1.38629 1.38629 1.38629 0.09192 4.77044 2.53397 1.46634 0.26236 1.09861 0.40547 25 1.29204 1.62984 1.33101 1.32758 72 a - - _ 1.38629 1.38629 1.38629 1.38629 0.17903 4.69694 1.86562 1.46634 0.26236 2.43012 0.09214 26 1.12866 1.72534 1.64995 1.18299 73 a - - _ 1.38629 1.38629 1.38629 1.38629 0.08324 4.53949 2.67088 1.46634 0.26236 0.37249 1.16801 27 1.04234 1.97812 1.80987 1.06315 74 a - - _ 1.38629 1.38629 1.38629 1.38629 1.04830 0.55460 2.58808 2.48319 0.08717 2.12276 0.12749 28 1.72265 1.15603 1.32179 1.42704 122 c - - > 1.38629 1.38629 1.38629 1.38629 0.35185 4.60336 1.24967 1.46634 0.26236 1.81245 0.17823 29 1.92130 1.14813 1.24344 1.39447 123 c - - > 1.38629 1.38629 1.38629 1.38629 1.07188 0.47391 3.35033 1.39638 0.28434 0.39384 1.12228 30 1.76500 1.75546 0.69803 1.84249 151 g - - > 1.38629 1.38629 1.38629 1.38629 0.05300 4.63743 3.17155 1.46634 0.26236 0.82386 0.57756 31 2.01598 1.01265 1.53644 1.24338 152 c - - > 1.38629 1.38629 1.38629 1.38629 0.01892 4.67011 4.67011 1.46634 0.26236 1.17182 0.37078 32 1.51116 1.86216 0.78596 1.78186 153 g - - > 1.38629 1.38629 1.38629 1.38629 0.01833 4.70164 4.70164 1.46634 0.26236 1.09434 0.40761 33 1.49615 1.43948 1.18369 1.45753 154 g - - > 1.38629 1.38629 1.38629 1.38629 0.01790 4.72524 4.72524 1.46634 0.26236 0.27905 1.41264 34 1.35216 1.94430 0.85747 1.74872 155 g - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 35 2.23517 3.17299 0.20438 3.32431 156 G - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 36 0.51850 3.33157 1.16783 2.85060 157 A - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 37 0.09418 4.06851 2.93550 3.92861 158 A - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 38 2.44271 0.35103 2.27717 2.23928 159 C - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 39 4.54590 0.03854 4.95731 3.90396 160 C - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 40 4.14940 5.18626 0.03133 4.65855 161 G - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 41 0.17329 3.79627 2.20515 3.63364 162 A - - - 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 42 4.71977 0.05715 4.56015 3.31963 163 C - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 43 4.49455 0.09978 4.31626 2.65291 164 C - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 44 3.52793 0.82477 3.29325 0.70286 165 u - - > 1.38629 1.38629 1.38629 1.38629 0.02249 4.77044 4.28585 1.46634 0.26236 1.09861 0.40547 45 1.96833 3.94512 0.20279 3.70850 166 G - - > 1.38629 1.38629 1.38629 1.38629 0.15348 4.76514 2.01172 1.46634 0.26236 1.28744 0.32293 46 0.54021 2.38138 2.67562 1.36223 167 A - - - 1.38629 1.38629 1.38629 1.38629 0.01968 4.63134 4.63134 1.46634 0.26236 2.90798 0.05613 47 0.40990 3.51606 2.15270 1.65864 168 A - - > 1.38629 1.38629 1.38629 1.38629 0.01968 4.63134 4.63134 1.46634 0.26236 0.11560 2.21484 48 3.84730 4.91713 0.03907 4.63955 169 G - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 49 4.73296 3.57478 4.71084 0.04690 170 U - - > 1.38629 1.38629 1.38629 1.38629 0.58678 2.14201 1.11942 0.13861 2.04459 1.09861 0.40547 50 1.40438 1.42157 1.95952 0.98827 172 u - - : 1.38629 1.38629 1.38629 1.38629 0.02517 4.38773 4.38773 1.46634 0.26236 0.08238 2.53736 51 1.35383 1.90140 2.39624 0.69048 173 U - - : 1.38629 1.38629 1.38629 1.38629 0.01728 4.76019 4.76019 1.46634 0.26236 0.64584 0.74280 52 2.76084 0.17998 3.93539 2.50178 174 C - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 53 0.30493 2.33424 2.40031 2.58693 175 A - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 54 0.18834 2.79885 3.34869 2.58156 176 A - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 55 1.35065 1.45060 2.63664 0.83265 177 u - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 56 4.54590 0.03854 4.95731 3.90396 178 C - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 57 4.54590 0.03854 4.95731 3.90396 179 C - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 58 4.14028 3.89439 4.69221 0.04651 180 U - - : 1.38629 1.38629 1.38629 1.38629 0.04765 4.77044 3.26870 1.46634 0.26236 1.09861 0.40547 59 2.11268 3.21666 0.32111 2.17458 181 G - - : 1.38629 1.38629 1.38629 1.38629 0.01762 4.74042 4.74042 1.46634 0.26236 0.36844 1.17704 60 0.03038 4.81305 4.43215 4.61442 182 A - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 61 3.36624 4.79979 0.05721 4.35379 183 G - - : 1.38629 1.38629 1.38629 1.38629 0.02745 4.77044 3.98475 1.46634 0.26236 1.09861 0.40547 62 4.13595 5.17099 0.03177 4.64525 184 G - - : 1.38629 1.38629 1.38629 1.38629 0.01727 4.76027 4.76027 1.46634 0.26236 0.64794 0.74049 63 4.14940 5.18626 0.03133 4.65855 185 G - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.77044 4.77044 1.46634 0.26236 1.09861 0.40547 64 0.06502 4.28591 3.40085 4.14504 186 A - - : 1.38629 1.38629 1.38629 1.38629 0.00859 4.76193 * 1.46634 0.26236 0.00000 * //