INFERNAL1/a [1.1.5 | Sep 2023] NAME DUF2815 ACC RF03084 DESC DUF2815 RNA STATES 190 NODES 57 CLEN 62 W 84 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 10:40:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03084/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 22 EFFN 6.754150 CKSUM 1820122839 NULL 0.000 0.000 0.000 0.000 GA 41.20 TC 43.80 NC 38.40 EFP7GF -13.8494 0.71913 ECMLC 0.59738 -8.36910 2.45178 1600000 770056 0.001558 ECMGC 0.41588 -16.43239 -2.51828 1600000 130368 0.003068 ECMLI 0.59476 -5.41447 4.65198 1600000 477920 0.002511 ECMGI 0.41549 -12.77516 0.22811 1600000 88803 0.004504 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 108 -8.193 -8.400 -0.022 -6.814 IL 1 1 2 1 4 1 21 87 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 86 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 20 84 108 -9.148 -0.009 -7.802 0.594 0.170 -0.790 -0.344 D 4 2 3 5 3 0 17 82 107 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 85 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 83 107 -9.148 -0.009 -7.802 -1.238 -2.002 1.643 -2.294 D 7 5 3 8 3 0 16 81 106 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 84 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 18 82 106 -9.148 -0.009 -7.802 -3.687 -5.145 1.944 -4.425 D 10 8 3 11 3 0 15 80 105 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 83 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 17 81 105 -4.482 -0.136 -4.461 -1.872 -2.770 1.556 -0.646 D 13 11 3 14 3 0 15 79 104 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 82 106 -1.737 -0.613 -4.437 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - U - - - ML 15 14 3 17 3 1 16 80 104 -9.088 -0.065 -4.559 -0.990 -1.228 -2.450 1.529 D 16 14 3 17 3 0 14 79 103 -7.069 -0.668 -1.461 IL 17 17 3 17 3 1 17 81 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - A - - - ML 18 17 3 20 3 1 15 79 103 -9.095 -0.061 -4.670 1.740 -2.727 -2.765 -1.469 D 19 17 3 20 3 0 13 78 102 -6.990 -0.717 -1.382 IL 20 20 3 20 3 1 16 80 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - G - - - ML 21 20 3 23 3 1 15 78 102 -9.099 -0.009 -7.753 -3.618 -5.069 1.941 -4.358 D 22 20 3 23 3 0 12 77 101 -6.941 -0.750 -1.333 IL 23 23 3 23 3 1 15 79 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - A - - - ML 24 23 3 26 3 1 14 77 101 -9.148 -0.009 -7.802 1.603 -1.318 -2.396 -1.431 D 25 23 3 26 3 0 11 75 100 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 78 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - C - - - ML 27 26 3 29 3 1 13 76 100 -9.485 -0.008 -7.803 -2.548 1.708 -2.386 -1.428 D 28 26 3 29 3 0 10 74 99 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 13 76 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 72 - G - - MR 30 29 3 32 3 1 12 75 99 -9.485 -0.008 -7.803 -3.687 -5.145 1.944 -4.425 D 31 29 3 32 3 0 9 73 97 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 75 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - U - - MR 33 32 3 35 3 1 11 74 98 -9.485 -0.008 -7.803 -3.624 -3.303 -4.414 1.915 D 34 32 3 35 3 0 8 72 96 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 74 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 70 - A - - MR 36 35 3 38 3 1 10 73 97 -1.719 -1.501 -1.544 1.944 -4.590 -4.053 -4.308 D 37 35 3 38 3 0 8 70 94 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 13 73 98 -1.256 -0.811 -6.482 0.000 0.000 0.000 0.000 [ MATR 13 ] - 66 - a - - MR 39 38 3 41 3 1 12 70 94 -8.889 -0.013 -7.206 0.740 -0.580 -1.241 0.308 D 40 38 3 41 3 0 7 68 93 -9.233 -1.624 -0.570 IR 41 41 3 41 3 1 11 71 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 65 - a - - MR 42 41 3 44 3 1 11 69 93 -9.109 -0.011 -7.427 0.412 -0.290 -0.836 0.370 D 43 41 3 44 3 0 6 68 92 -8.764 -0.638 -1.494 IR 44 44 3 44 3 1 10 70 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 64 - u - - MR 45 44 3 47 3 1 10 68 92 -9.388 -0.009 -7.705 0.317 -0.235 -0.684 0.359 D 46 44 3 47 3 0 5 67 91 -7.521 -0.520 -1.750 IR 47 47 3 47 3 1 8 69 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 63 - a - - MR 48 47 3 50 3 1 10 67 91 -9.485 -0.008 -7.803 0.707 -0.795 -1.558 0.538 D 49 47 3 50 3 0 4 65 90 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 7 68 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 62 - A - - MR 51 50 3 53 3 1 9 66 90 -9.485 -0.008 -7.803 1.207 -1.203 -1.293 -0.236 D 52 50 3 53 3 0 3 64 89 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 7 67 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 61 - U - - MR 54 53 3 56 3 1 8 65 89 -9.485 -0.008 -7.803 -0.153 -0.738 -1.866 1.155 D 55 53 3 56 3 0 2 63 88 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 66 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 60 - a - - MR 57 56 3 59 3 1 8 64 88 -9.485 -0.008 -7.803 0.673 -0.952 -0.481 0.229 D 58 56 3 59 3 0 1 62 87 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 5 65 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 59 - A - - MR 60 59 3 62 3 1 7 63 87 -9.485 -0.008 -7.803 1.338 -1.474 -0.670 -1.047 D 61 59 3 62 3 0 1 61 86 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 5 64 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 58 - a - - MR 63 62 3 65 3 1 7 62 86 -9.485 -0.008 -7.803 0.987 -1.676 -1.840 0.512 D 64 62 3 65 3 0 0 60 85 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 5 63 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 57 - G - - MR 66 65 3 68 3 1 6 61 85 -9.485 -0.008 -7.803 -3.687 -5.145 1.944 -4.425 D 67 65 3 68 3 0 0 59 84 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 62 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 56 - G - - MR 69 68 3 71 3 1 6 60 84 -9.485 -0.008 -7.803 -3.687 -5.145 1.944 -4.425 D 70 68 3 71 3 0 0 58 83 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 3 61 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 55 - A - - MR 72 71 3 74 3 1 5 59 83 -9.485 -0.008 -7.803 1.944 -4.590 -4.053 -4.308 D 73 71 3 74 3 0 0 57 82 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 3 60 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - A - - MR 75 74 3 77 3 1 5 58 82 -9.485 -0.008 -7.803 1.944 -4.590 -4.053 -4.308 D 76 74 3 77 3 0 0 56 81 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 2 59 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 53 - A - - MR 78 77 3 80 3 1 4 57 81 -9.485 -0.008 -7.803 1.259 -0.908 -1.856 -0.327 D 79 77 3 80 3 0 0 55 80 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 58 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 52 - A - - MR 81 80 3 83 3 1 4 56 80 -9.485 -0.008 -7.803 1.621 -2.394 -2.494 -0.844 D 82 80 3 83 3 0 0 54 79 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 57 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 51 - A - - MR 84 83 3 86 3 1 3 55 79 -9.485 -0.008 -7.803 1.319 -1.787 -1.310 -0.301 D 85 83 3 86 3 0 0 53 78 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 56 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 50 - U - - MR 87 86 3 89 3 1 3 54 78 -9.485 -0.008 -7.803 -0.090 -0.757 -1.834 1.129 D 88 86 3 89 3 0 0 52 77 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 55 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 49 - u - - MR 90 89 3 92 3 1 2 53 77 -9.485 -0.008 -7.803 -0.639 -1.111 -0.141 0.991 D 91 89 3 92 3 0 0 51 76 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 54 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 48 - g - - MR 93 92 3 95 3 1 2 52 76 -9.485 -0.008 -7.803 -0.599 -0.610 0.679 0.116 D 94 92 3 95 3 0 0 50 75 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 53 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 47 - a - - MR 96 95 3 98 3 1 1 51 75 -9.485 -0.071 -4.425 0.504 -0.656 -0.474 0.296 D 97 95 3 98 3 0 0 49 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 52 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 46 - A - - MR 99 98 3 101 3 1 1 50 74 -9.423 -0.009 -7.741 1.340 -0.395 -2.046 -1.102 D 100 98 3 101 3 0 0 48 72 -7.212 -2.390 -0.318 IR 101 101 3 101 3 1 1 51 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 45 - A - - MR 102 101 3 104 3 1 1 49 73 -9.423 -0.197 -2.983 1.156 -1.716 -1.861 0.254 D 103 101 3 104 3 0 0 46 71 -7.212 -2.390 -0.318 IR 104 104 3 104 3 1 1 50 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 44 - u - - MR 105 104 3 107 5 1 1 48 73 -1.276 -0.795 -7.745 -7.958 -8.849 0.033 -0.509 -1.567 0.954 D 106 104 3 107 5 0 0 43 67 -6.743 -0.231 -4.369 -5.800 -3.795 IR 107 107 3 107 5 1 1 49 73 -1.097 -1.377 -4.616 -3.298 -7.618 0.000 0.000 0.000 0.000 [ MATP 36 ] 11 38 G C - - MP 108 107 3 112 6 2 2 41 59 -9.600 -9.539 -0.015 -8.316 -8.596 -8.991 -4.929 -3.335 -4.930 1.503 -6.021 -5.191 -1.151 -5.387 -4.735 3.499 -5.076 -0.954 -1.414 -4.729 -3.175 -3.806 ML 109 107 3 112 6 1 1 39 58 -6.788 -7.134 -0.764 -1.543 -6.984 -4.513 1.022 -0.889 -0.634 -0.350 MR 110 107 3 112 6 1 1 39 58 -7.947 -6.676 -1.233 -6.655 -0.953 -4.868 1.358 -1.348 -1.077 -0.810 D 111 107 3 112 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 12 37 a u - - MP 114 113 6 118 6 2 2 39 57 -9.678 -9.617 -0.014 -8.393 -8.673 -9.068 -4.239 -3.057 -4.191 2.790 -4.955 -5.074 -0.333 -4.589 -4.326 2.527 -4.736 -0.630 0.126 -4.290 -2.314 -3.081 ML 115 113 6 118 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 37 56 -7.515 -6.244 -0.913 -6.222 -1.356 -4.436 -0.173 0.628 -0.885 0.037 D 117 113 6 118 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 13 36 a u - - MP 120 119 6 124 6 2 2 37 55 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -3.197 -2.725 -3.267 2.126 -3.334 -4.047 0.719 -3.578 -3.398 1.899 -3.873 1.162 0.964 -3.329 0.003 -2.331 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 14 35 c g - - MP 126 125 6 130 6 2 2 35 53 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -4.018 -3.848 -4.042 0.541 -3.083 -4.844 2.770 -3.712 -3.962 0.643 -4.468 -1.604 2.080 -4.227 -0.195 -2.776 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 15 34 u a - - MP 132 131 6 136 6 2 2 33 51 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -4.518 -4.381 -4.428 0.432 -3.305 -5.081 2.378 -4.006 -4.377 -0.233 -4.809 -2.171 2.864 -4.676 -0.899 -3.187 ML 133 131 6 136 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 16 33 G C - - MP 138 137 6 142 6 2 2 31 49 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -4.995 -3.427 -4.990 1.749 -6.142 -5.342 -1.263 -5.447 -4.831 3.446 -5.182 -1.028 -1.517 -4.839 -3.281 -3.858 ML 139 137 6 142 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 17 32 G C - - MP 144 143 6 148 4 2 2 29 47 -8.193 -8.400 -0.022 -6.814 -4.585 -3.152 -4.508 1.619 -5.671 -5.088 -0.795 -5.046 -4.613 3.290 -4.950 0.535 -1.043 -4.427 -2.799 -3.409 ML 145 143 6 148 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 18 - C - - - ML 150 149 6 152 3 1 1 26 45 -4.368 -0.078 -7.802 -4.237 1.931 -4.885 -3.309 D 151 149 6 152 3 0 0 24 43 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 27 46 -1.759 -0.601 -4.459 0.000 0.000 0.000 0.000 [ MATL 44 ] 20 - C - - - ML 153 152 3 155 3 1 1 25 43 -9.148 -0.009 -7.802 -0.336 1.290 -2.492 -0.774 D 154 152 3 155 3 0 0 24 43 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 21 - C - - - ML 156 155 3 158 3 1 1 24 42 -9.148 -0.009 -7.802 -4.237 1.931 -4.885 -3.309 D 157 155 3 158 3 0 0 23 42 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 22 - C - - - ML 159 158 3 161 3 1 1 22 41 -9.148 -0.009 -7.802 -2.401 1.667 -2.281 -1.223 D 160 158 3 161 3 0 0 22 41 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 23 - u - - - ML 162 161 3 164 3 1 1 21 40 -9.148 -0.063 -4.619 -0.380 -0.704 0.179 0.571 D 163 161 3 164 3 0 0 21 40 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 24 - A - - - ML 165 164 3 167 3 1 1 20 39 -9.095 -0.204 -2.942 1.941 -4.503 -3.971 -4.221 D 166 164 3 167 3 0 0 19 38 -6.990 -2.503 -0.294 IL 167 167 3 167 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 25 - U - - - ML 168 167 3 170 3 1 1 19 38 -8.902 -0.011 -7.556 -0.953 0.243 -2.037 1.040 D 169 167 3 170 3 0 0 18 37 -8.279 -0.563 -1.644 IL 170 170 3 170 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 26 - U - - - ML 171 170 3 173 3 1 1 18 36 -9.099 -0.081 -4.240 -3.547 -3.234 -4.335 1.910 D 172 170 3 173 3 0 0 17 36 -6.941 -2.454 -0.305 IL 173 173 3 173 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 27 - G - - - ML 174 173 3 176 3 1 1 17 35 -9.028 -0.010 -7.682 -0.917 -2.112 1.341 -0.504 D 175 173 3 176 3 0 0 16 35 -7.597 -0.429 -1.989 IL 176 176 3 176 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 28 - A - - - ML 177 176 3 179 3 1 1 15 34 -9.148 -0.009 -7.802 1.944 -4.590 -4.053 -4.308 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 29 - A - - - ML 180 179 3 182 3 1 1 14 32 -9.148 -0.009 -7.802 1.944 -4.590 -4.053 -4.308 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 30 - G - - - ML 183 182 3 185 3 1 1 12 31 -9.148 -0.009 -7.802 -3.687 -5.145 1.944 -4.425 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 31 - U - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.408 -2.279 -3.030 1.720 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME DUF2815 ACC RF03084 DESC DUF2815 RNA LENG 62 MAXL 130 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 10:40:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03084/CM NSEQ 22 EFFN 10.922119 CKSUM 1820122839 STATS LOCAL MSV -8.1779 0.71913 STATS LOCAL VITERBI -8.6211 0.71913 STATS LOCAL FORWARD -3.7831 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12968 1.65367 1.38946 1.44261 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 0.00000 * 1 0.94357 1.20587 1.98600 1.74818 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 2 2.39789 2.83368 0.20588 3.31423 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 3 4.43785 5.51715 0.02322 4.94589 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 4 3.16843 3.82713 0.25582 1.82093 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.11074 2.92725 2.97037 0.22057 1.61982 1.09861 0.40547 5 2.19967 2.39615 3.51537 0.26350 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.05642 5.02179 3.03108 1.46634 0.26236 0.21957 1.62388 6 0.13989 3.68947 3.76643 2.49583 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.05269 5.02722 3.10619 1.46634 0.26236 0.24153 1.53910 7 4.39496 5.46760 0.02428 4.90289 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.01316 5.03044 5.03044 1.46634 0.26236 0.25690 1.48478 8 0.22227 2.36449 3.47276 2.60002 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 9 3.65450 0.15196 3.11888 2.64651 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.11526 5.06783 2.27720 1.46634 0.26236 1.09861 0.40547 10 1.57035 3.73197 0.30276 3.52984 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01403 4.96660 4.96660 1.46634 0.26236 0.69313 0.69317 11 0.67759 3.32757 0.97042 2.55937 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.01327 5.02179 5.02179 1.46634 0.26236 0.21957 1.62388 12 1.10318 2.47073 0.93841 1.64810 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 13 2.37127 0.76644 2.22129 1.09810 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 14 2.48633 1.10311 3.07498 0.61849 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 15 1.47149 3.97746 0.31548 3.80558 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 16 1.57586 3.52655 0.31640 3.35242 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 17 4.84275 0.02859 5.20910 4.21103 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06601 2.85453 5.06783 0.20594 1.68137 1.09861 0.40547 18 1.65040 0.41328 3.55873 2.13641 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 19 4.84275 0.02859 5.20910 4.21103 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 20 3.53506 0.17610 3.04954 2.46593 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 21 1.76520 1.93508 1.19969 0.95934 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05381 5.06783 3.07711 1.46634 0.26236 1.09861 0.40547 22 0.02274 5.10860 4.71673 4.89405 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.16440 5.02722 1.93077 1.46634 0.26236 2.23225 0.11349 23 2.26929 1.16439 3.17337 0.61131 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01534 4.87816 4.87816 1.46634 0.26236 0.29728 1.35805 24 4.44435 4.17296 5.00316 0.03445 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06861 5.03044 2.81715 1.46634 0.26236 2.17792 0.12022 25 2.22028 3.21580 0.38562 1.76453 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01390 4.97573 4.97573 1.46634 0.26236 0.12537 2.13852 26 0.02149 5.16685 4.77261 4.94787 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 27 0.02149 5.16685 4.77261 4.94787 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 28 4.43785 5.51715 0.02322 4.94589 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 29 2.46763 3.36855 3.93540 0.14939 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 30 3.58180 0.44681 3.32983 1.21499 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 31 3.98154 0.34023 3.78104 1.39862 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 32 0.65800 3.24234 1.05062 2.37173 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 33 1.24929 2.35664 0.67870 2.19571 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 34 2.05577 1.47246 1.90695 0.70499 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 35 2.64516 1.01658 3.12330 0.64786 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 36 2.50918 0.37266 3.52677 1.60760 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.81435 0.99170 1.68133 0.82384 0.57758 1.09861 0.40547 37 1.37289 1.78877 2.71442 0.66705 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.01547 4.86958 4.86958 1.46634 0.26236 0.36142 1.19299 38 0.50840 2.98317 3.09628 1.19503 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.01331 5.01897 5.01897 1.46634 0.26236 2.35832 0.09935 39 0.38749 1.63553 3.23185 2.44294 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.01331 5.01897 5.01897 1.46634 0.26236 0.20968 1.66518 40 1.01027 1.89634 1.72524 1.17885 47 a - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 41 1.98364 1.83699 0.82858 1.32252 48 g - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 42 2.00098 2.31807 1.43698 0.63735 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 43 1.46865 2.00057 2.97123 0.53911 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 44 0.40309 2.97177 2.45182 1.63786 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 45 0.21390 3.46717 3.58141 2.01343 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 46 0.44058 2.09658 3.03008 1.68658 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 47 0.02149 5.16685 4.77261 4.94787 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 48 0.02149 5.16685 4.77261 4.94787 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 49 4.43785 5.51715 0.02322 4.94589 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 50 4.43785 5.51715 0.02322 4.94589 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 51 0.62944 2.95986 3.08180 0.99585 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 52 0.39170 2.57983 1.88596 2.33690 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 53 0.87968 2.15893 1.73326 1.22783 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 54 1.52003 1.98348 3.00119 0.52091 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 55 0.48365 2.36760 2.43562 1.59838 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 56 0.84366 2.03027 2.72025 0.98696 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.09044 5.06783 2.52351 1.46634 0.26236 1.09861 0.40547 57 1.15677 1.54476 1.89707 1.13281 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.24134 4.99107 1.57200 1.46634 0.26236 2.69019 0.07028 58 1.07720 1.59345 2.03060 1.12401 65 a - - : 1.38629 1.38629 1.38629 1.38629 0.20349 4.76689 1.73947 1.46634 0.26236 3.79043 0.02284 59 0.81162 1.84442 2.42582 1.17332 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.85820 0.56940 4.58404 0.62676 0.76425 0.03179 3.46447 60 0.02149 5.16685 4.77261 4.94787 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 61 4.50029 4.22439 5.06058 0.03261 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.01267 5.06783 5.06783 1.46634 0.26236 1.09861 0.40547 62 4.43785 5.51715 0.02322 4.94589 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.00636 5.06151 * 1.46634 0.26236 0.00000 * //