INFERNAL1/a [1.1.5 | Sep 2023] NAME raiA-hairpin ACC RF03059 DESC raiA-hairpin RNA STATES 148 NODES 42 CLEN 48 W 62 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 21:58:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03059/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 80 EFFN 6.723633 CKSUM 634871346 NULL 0.000 0.000 0.000 0.000 GA 43.70 TC 44.00 NC 41.90 EFP7GF -14.1096 0.71937 ECMLC 0.54994 -10.65169 1.06385 1600000 753793 0.001592 ECMGC 0.36629 -21.97819 -5.04584 1600000 197508 0.002025 ECMLI 0.51476 -10.04981 2.15879 1600000 643414 0.001865 ECMGI 0.36854 -18.49348 -2.51006 1600000 144632 0.002766 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 62 81 -8.188 -8.395 -0.022 -6.809 IL 1 1 2 1 4 1 11 67 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 11 62 81 -9.143 -0.009 -7.797 -4.230 1.930 -4.879 -3.302 D 4 2 3 5 3 0 6 61 80 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 10 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 10 61 80 -9.143 -0.009 -7.797 1.308 -2.870 0.267 -2.440 D 7 5 3 8 3 0 5 60 79 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 9 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 9 60 79 -9.143 -0.009 -7.797 -4.230 1.930 -4.879 -3.302 D 10 8 3 11 3 0 5 59 78 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 8 59 78 -9.143 -0.046 -5.064 -3.410 1.869 -3.313 -2.719 D 13 11 3 14 3 0 4 58 77 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 8 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 7 58 77 -9.106 -0.009 -7.760 -0.058 -2.406 1.328 -1.553 D 16 14 3 17 3 0 4 57 76 -6.789 -0.863 -1.181 IL 17 17 3 17 3 1 7 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 6 57 76 -9.143 -0.009 -7.797 1.739 -2.749 -2.798 -1.437 D 19 17 3 20 3 0 3 56 75 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 6 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 5 56 74 -9.143 -0.076 -4.337 -2.848 -4.701 1.912 -4.066 D 22 20 3 23 3 0 2 55 74 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 5 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 5 55 73 -9.077 -0.009 -7.731 -3.510 -3.201 -4.298 1.908 D 25 23 3 26 3 0 1 54 73 -7.132 -0.633 -1.523 IL 26 26 3 26 3 1 4 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 4 54 72 -9.143 -0.009 -7.797 -2.832 1.868 -4.130 -2.713 D 28 26 3 29 3 0 0 53 72 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 3 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 3 53 71 -9.143 -0.009 -7.797 -3.168 1.827 -2.615 -2.484 D 31 29 3 32 3 0 0 52 71 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 2 52 70 -9.143 -0.266 -2.585 -3.680 -5.137 1.944 -4.418 D 34 32 3 35 3 0 0 51 70 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 2 51 69 -2.959 -0.225 -6.000 1.803 -3.197 -1.900 -2.912 D 37 35 3 38 3 0 0 50 68 -0.555 -2.350 -3.019 IL 38 38 3 38 3 1 2 50 69 -3.452 -0.169 -5.691 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - A - - MR 39 38 3 41 3 1 2 49 67 -9.467 -0.009 -7.785 1.943 -4.560 -4.025 -4.279 D 40 38 3 41 3 0 0 48 66 -6.601 -1.226 -0.831 IR 41 41 3 41 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - G - - MR 42 41 3 44 3 1 2 48 66 -9.480 -0.009 -7.798 -2.102 -4.223 1.862 -3.656 D 43 41 3 44 3 0 0 47 65 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - G - - MR 45 44 3 47 3 1 2 47 65 -9.480 -0.009 -7.798 -3.680 -5.137 1.944 -4.418 D 46 44 3 47 3 0 0 46 64 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 49 - G - - MR 48 47 3 50 3 1 1 46 64 -9.480 -0.009 -7.798 -1.731 -3.975 1.825 -3.434 D 49 47 3 50 3 0 0 45 63 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 48 - A - - MR 51 50 3 53 3 1 1 45 63 -9.480 -0.030 -5.684 1.797 -3.010 -3.006 -1.860 D 52 50 3 53 3 0 0 44 62 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 47 - A - - MR 54 53 3 56 3 1 1 44 62 -9.458 -0.009 -7.776 1.430 -2.872 -0.016 -2.471 D 55 53 3 56 3 0 0 43 61 -6.737 -1.062 -0.967 IR 56 56 3 56 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 46 - A - - MR 57 56 3 59 3 1 1 43 61 -5.876 -0.031 -7.798 1.744 -1.634 -2.762 -2.469 D 58 56 3 59 3 0 0 42 60 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 44 62 -2.078 -0.488 -4.316 0.000 0.000 0.000 0.000 [ MATR 20 ] - 44 - A - - MR 60 59 3 62 3 1 1 42 60 -9.480 -0.009 -7.798 1.590 -2.995 -0.503 -2.657 D 61 59 3 62 3 0 0 41 59 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 43 - C - - MR 63 62 3 65 3 1 1 41 59 -9.480 -0.009 -7.798 -4.230 1.930 -4.879 -3.302 D 64 62 3 65 3 0 0 40 58 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 42 - G - - MR 66 65 3 68 3 1 1 40 58 -9.480 -0.009 -7.798 -3.680 -5.137 1.944 -4.418 D 67 65 3 68 3 0 0 39 57 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 41 - U - - MR 69 68 3 71 3 1 1 39 57 -9.480 -0.009 -7.798 -2.271 -2.538 -3.404 1.818 D 70 68 3 71 3 0 0 38 56 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 40 - G - - MR 72 71 3 74 3 1 1 38 56 -9.480 -0.009 -7.798 -2.580 -4.535 1.897 -3.926 D 73 71 3 74 3 0 0 37 55 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 39 - G - - MR 75 74 3 77 3 1 1 37 55 -9.480 -0.050 -4.935 -1.933 -4.110 1.846 -3.555 D 76 74 3 77 3 0 0 36 54 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 38 - U - - MR 78 77 3 80 5 1 1 36 54 -8.126 -0.019 -7.942 -8.154 -9.045 -1.275 -1.919 -1.684 1.590 D 79 77 3 80 5 0 0 35 53 -5.716 -0.517 -3.343 -4.774 -2.768 IR 80 80 3 80 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 14 37 G C - - MP 81 80 3 85 6 2 2 35 53 -9.711 -9.650 -0.021 -8.427 -7.145 -9.102 -6.495 -4.053 -6.960 -1.101 -7.864 -5.476 -2.705 -7.248 -5.423 3.855 -5.682 -0.831 -2.996 -5.641 -4.881 -5.817 ML 82 80 3 85 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 15 36 G C - - MP 87 86 6 91 6 2 2 33 51 -9.704 -9.644 -0.014 -8.420 -8.700 -9.095 -4.356 -2.963 -4.228 0.985 -5.272 -4.754 0.148 -4.836 -4.484 3.309 -4.770 0.680 -0.665 -4.081 -2.406 -3.171 ML 88 86 6 91 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 32 50 -7.101 -5.830 -1.414 -5.808 -0.942 -4.022 0.202 -0.364 -0.378 0.383 D 90 86 6 91 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 16 35 C G - - MP 93 92 6 97 6 2 2 31 49 -9.711 -9.650 -0.026 -8.427 -8.707 -6.647 -4.258 -4.183 -4.219 -0.324 -3.210 -4.905 3.024 -3.884 -4.182 -0.155 -2.505 -2.068 1.963 -4.445 0.335 -3.036 ML 94 92 6 97 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 17 34 u a - - MP 99 98 6 103 6 2 2 29 47 -9.699 -9.639 -0.014 -8.415 -8.695 -9.090 -4.561 -4.538 -4.440 -0.718 -2.213 -5.022 1.964 -4.047 -4.430 -0.570 -4.829 -2.493 2.688 -4.709 1.821 -3.287 ML 100 98 6 103 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 26 44 -9.324 -8.022 -2.033 -4.501 -4.519 -0.594 IL 103 103 5 103 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 18 33 C G - - MP 105 104 6 109 6 2 2 27 45 -9.711 -9.650 -0.014 -8.427 -8.707 -9.102 -5.584 -5.657 -5.121 -1.756 -3.613 -5.416 3.535 -4.471 -5.167 -1.628 -5.391 -3.684 0.390 -5.543 1.033 -3.962 ML 106 104 6 109 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 19 32 C G - - MP 111 110 6 115 6 2 2 25 43 -9.711 -9.650 -0.014 -8.427 -8.707 -9.102 -5.698 -5.802 -5.189 -1.916 -3.647 -5.450 3.639 -4.520 -5.247 -1.801 -5.447 -3.875 0.139 -5.632 0.566 -4.041 ML 112 110 6 115 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 20 31 G C - - MP 117 116 6 121 6 2 2 23 41 -9.711 -9.650 -0.014 -8.427 -8.707 -9.102 -5.730 -3.814 -5.785 -0.600 -6.222 -5.273 -0.127 -6.127 -5.185 3.749 -5.437 -1.561 -1.867 -5.148 -3.496 -4.701 ML 118 116 6 121 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 21 30 G C - - MP 123 122 6 127 4 2 2 21 39 -3.677 -8.395 -0.196 -4.455 -4.404 -3.034 -4.305 0.814 -5.468 -5.040 -0.595 -4.844 -4.503 3.508 -4.850 -0.377 -0.847 -4.291 -2.596 -1.859 ML 124 122 6 127 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 21 39 -2.512 -0.876 -1.943 -5.680 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 20 38 -1.907 -0.530 -4.607 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - g - - - ML 129 128 6 131 3 1 1 18 36 -9.091 -0.009 -7.745 0.002 -0.754 0.302 0.229 D 130 128 6 131 3 0 0 17 36 -6.976 -0.726 -1.368 IL 131 131 3 131 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - g - - - ML 132 131 3 134 3 1 1 17 35 -9.143 -0.009 -7.797 0.415 -0.898 0.771 -1.241 D 133 131 3 134 3 0 0 17 35 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - a - - - ML 135 134 3 137 3 1 1 15 34 -9.143 -0.009 -7.797 0.428 0.085 -0.590 -0.104 D 136 134 3 137 3 0 0 16 34 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - u - - - ML 138 137 3 140 3 1 1 14 32 -9.143 -0.009 -7.797 -0.314 -0.410 -0.794 0.900 D 139 137 3 140 3 0 0 15 33 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 27 - C - - - ML 141 140 3 143 3 1 1 12 31 -9.143 -0.158 -3.297 -0.878 1.182 -1.206 -0.407 D 142 140 3 143 3 0 0 13 32 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 28 - A - - - ML 144 143 3 146 2 1 1 1 1 * 0.000 1.104 -1.377 -0.607 -0.305 D 145 143 3 146 2 0 0 0 0 * 0.000 IL 146 146 3 146 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 147 146 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME raiA-hairpin ACC RF03059 DESC raiA-hairpin RNA LENG 48 MAXL 114 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 21:58:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03059/CM NSEQ 80 EFFN 9.174805 CKSUM 634871346 STATS LOCAL MSV -7.3119 0.71937 STATS LOCAL VITERBI -7.9622 0.71937 STATS LOCAL FORWARD -3.7506 0.71937 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51537 1.27567 1.03301 1.93036 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 0.00000 * 1 4.66469 0.03421 5.05687 4.02614 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 2 0.44865 3.78138 1.17228 3.53853 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 3 4.66469 0.03421 5.05687 4.02614 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 4 4.08447 0.06875 3.77083 3.62763 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.04315 4.87694 3.36358 1.46634 0.26236 1.09861 0.40547 5 1.44269 3.28479 0.42562 2.61874 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.01579 4.84958 4.84958 1.46634 0.26236 0.36488 1.18509 6 0.15317 3.55761 3.62466 2.44354 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 7 3.54105 4.99141 0.04777 4.52163 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.06515 4.87694 2.89219 1.46634 0.26236 1.09861 0.40547 8 4.20473 3.95320 4.75798 0.04364 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82792 4.82792 1.46634 0.26236 0.24281 1.53441 9 3.50466 0.07034 4.51487 3.61498 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 10 3.95649 0.09356 3.22866 3.48767 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 11 4.26368 5.31662 0.02783 4.77191 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 12 0.11024 3.90564 2.80081 3.75114 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.14210 2.08069 4.87694 0.11790 2.19628 1.09861 0.40547 13 3.60283 4.67036 0.04780 4.59911 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02363 4.87694 4.15214 1.46634 0.26236 1.09861 0.40547 14 2.03948 2.63382 0.29574 2.91663 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01548 4.86880 4.86880 1.46634 0.26236 0.67745 0.70910 15 3.09110 0.59330 2.69260 1.09559 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02985 4.87694 3.82653 1.46634 0.26236 1.09861 0.40547 16 3.42097 1.39564 3.21210 0.38659 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01558 4.86267 4.86267 1.46634 0.26236 0.53039 0.88765 17 4.06513 0.27544 3.92650 1.59020 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 18 4.13634 0.20717 4.01366 1.87685 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 19 3.33260 2.84102 0.12035 3.94654 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 20 2.22910 3.29522 0.22457 2.87426 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.13918 2.47026 3.09296 0.17140 1.84823 1.09861 0.40547 21 1.40994 1.94930 1.13822 1.22731 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01597 4.83846 4.83846 1.46634 0.26236 0.28963 1.38046 22 1.09101 2.03769 0.79540 2.49625 24 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 23 1.07845 1.29421 1.80994 1.50463 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 24 1.64951 1.68532 1.95329 0.73259 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 25 2.10730 0.50943 2.26058 1.75272 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04258 4.87694 3.37959 1.46634 0.26236 1.09861 0.40547 26 0.57710 2.47088 1.83151 1.64097 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01578 4.85014 4.85014 1.46634 0.26236 0.36980 1.17400 27 3.36773 0.27032 3.09907 1.84957 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 28 4.13359 0.13451 2.78732 3.03145 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 29 2.75788 4.15302 0.10474 3.89707 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 30 2.57460 4.06794 0.12236 3.82247 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.02985 4.87694 3.82653 1.46634 0.26236 1.09861 0.40547 31 0.80317 3.37608 0.74158 3.18082 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.01558 4.86267 4.86267 1.46634 0.26236 0.53039 0.88765 32 1.35443 3.02309 0.45361 2.84860 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 33 3.16098 0.43784 2.50409 1.46778 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 34 4.77301 0.07872 4.59851 2.86160 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04723 4.87694 3.25690 1.46634 0.26236 1.09861 0.40547 35 2.41232 2.96504 2.63431 0.23944 38 U - - : 1.38629 1.38629 1.38629 1.38629 0.01585 4.84557 4.84557 1.46634 0.26236 0.33345 1.26035 36 2.82187 4.54940 0.08968 4.15330 39 G - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 37 3.32492 4.86693 0.05731 4.42070 40 G - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 38 3.11762 3.38514 4.00162 0.10139 41 U - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 39 4.26368 5.31662 0.02783 4.77191 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 40 4.66469 0.03421 5.05687 4.02614 43 C - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 41 0.25798 3.81381 1.72084 3.63406 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.03290 3.69915 4.87694 0.53206 0.88525 1.09861 0.40547 42 0.15053 2.54723 3.58596 3.38901 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03215 4.87694 3.72911 1.46634 0.26236 1.09861 0.40547 43 0.36502 3.76414 1.37163 3.54267 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.01562 4.86041 4.86041 1.46634 0.26236 0.49143 0.94611 44 0.11655 3.74142 3.77320 2.75968 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 45 2.66880 4.44851 0.10334 4.06571 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 46 4.26368 5.31662 0.02783 4.77191 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.01536 4.87694 4.87694 1.46634 0.26236 1.09861 0.40547 47 2.95160 4.63395 0.07968 4.22579 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.02505 4.87694 4.06733 1.46634 0.26236 1.09861 0.40547 48 0.02688 4.93709 4.55171 4.73322 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.00778 4.85967 * 1.46634 0.26236 0.00000 * //