INFERNAL1/a [1.1.5 | Sep 2023] NAME nhaA-I ACC RF03057 DESC nhaA-I RNA STATES 174 NODES 46 CLEN 55 W 100 ALPH RNA RF no CONS yes MAP yes DATE Wed Aug 14 11:42:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03057/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 281 EFFN 47.872391 CKSUM 1922787463 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.20 NC 36.50 EFP7GF -20.8133 0.72412 ECMLC 0.55224 -11.49436 0.27663 1600000 798497 0.001503 ECMGC 0.36649 -21.86720 -6.65475 1600000 105524 0.003791 ECMLI 0.55713 -10.12544 1.31095 1600000 701939 0.001710 ECMGI 0.38489 -18.09790 -4.04288 1600000 89422 0.004473 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 100 153 -10.760 -10.967 -0.004 -9.381 IL 1 1 2 1 4 3 21 103 156 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 20 102 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 4 19 100 154 -11.677 -0.002 -10.331 -4.068 -4.351 1.938 -4.095 D 4 2 3 5 3 0 17 98 152 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 20 101 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 3 18 99 153 -11.677 -0.002 -10.331 -6.232 -7.899 1.975 -4.302 D 7 5 3 8 3 0 16 98 151 -6.174 -1.687 -0.566 IL 8 8 3 8 3 2 19 100 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 2 17 98 152 -11.677 -0.002 -10.331 -6.323 -8.082 1.991 -7.082 D 10 8 3 11 3 0 16 97 150 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 18 99 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 2 1 16 97 151 -12.315 -0.000 -7.710 -6.937 -8.709 1.994 D 13 11 3 14 2 0 15 96 150 -8.445 -0.004 IL 14 14 3 14 2 1 17 98 151 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 5 ] - - - - - - B 15 14 3 16 84 0 15 96 150 [ BEGL 6 ] - - - - - - S 16 15 1 17 4 0 0 50 82 -0.006 -9.758 -9.165 -9.805 [ MATP 7 ] 5 58 G C - - MP 17 16 1 21 6 2 2 50 82 -11.687 -11.627 -0.037 -5.992 -6.852 -11.078 -5.977 -4.704 -5.808 -0.717 -6.372 -6.403 1.322 -6.288 -6.156 3.419 -6.434 -1.605 -0.708 -5.700 0.093 -4.730 ML 18 16 1 21 6 1 1 48 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 1 21 6 1 1 48 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 1 21 6 0 0 45 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 49 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 49 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 57 C G - - MP 23 22 6 27 6 2 2 48 80 -11.654 -11.593 -0.066 -4.957 -6.447 -11.044 -6.358 -6.087 -6.311 -1.929 -5.126 -7.079 3.083 -5.808 -6.189 -1.180 -6.669 -1.967 1.752 -6.519 1.535 -2.525 ML 24 22 6 27 6 1 1 47 79 -7.381 -7.727 -0.459 -2.136 -7.577 -5.107 -0.410 0.709 -1.157 0.220 MR 25 22 6 27 6 1 1 47 79 -7.625 -6.354 -0.822 -6.333 -1.466 -4.546 0.715 -0.837 -0.050 -0.263 D 26 22 6 27 6 0 0 43 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 47 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 47 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 g c - - MP 29 28 6 33 6 2 2 46 78 -11.626 -11.566 -0.280 -6.242 -2.625 -11.017 -4.038 -3.317 -3.505 1.203 -3.232 -5.025 2.299 -4.436 -4.255 2.341 -3.122 -1.177 0.657 -4.317 -0.152 -2.832 ML 30 28 6 33 6 1 1 45 77 -8.033 -8.379 -0.275 -2.788 -8.229 -5.759 0.627 -1.030 0.191 -0.277 MR 31 28 6 33 6 1 1 45 77 -7.780 -6.509 -0.986 -6.487 -1.217 -4.700 -0.055 -0.242 -0.394 0.517 D 32 28 6 33 6 0 0 41 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 46 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 45 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 55 g c - - MP 35 34 6 39 6 2 2 44 76 -11.420 -11.359 -0.135 -5.052 -4.104 -10.810 -2.819 -3.470 -2.910 1.026 -2.075 -4.390 1.766 -3.881 -3.094 2.589 -4.186 -0.771 0.898 -3.060 -0.088 -2.778 ML 36 34 6 39 6 1 1 43 75 -7.212 -7.558 -0.839 -1.356 -7.408 -4.937 0.132 0.095 -0.799 0.335 MR 37 34 6 39 6 1 1 43 75 -10.557 -9.286 -0.484 -9.264 -1.860 -7.478 0.838 -1.136 0.134 -0.598 D 38 34 6 39 6 0 0 39 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 44 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 43 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 g c - - MP 41 40 6 45 6 2 2 42 74 -11.512 -11.451 -0.042 -6.065 -10.507 -6.371 -2.317 -2.742 -0.292 1.196 -3.169 -2.787 1.697 -2.943 -2.179 1.813 -2.066 0.034 1.324 -2.862 0.080 -2.192 ML 42 40 6 45 6 1 1 41 73 -7.925 -8.272 -0.298 -2.680 -8.121 -5.651 0.304 -0.730 -0.326 0.449 MR 43 40 6 45 6 1 1 41 73 -9.795 -8.524 -0.186 -8.503 -3.251 -6.716 1.004 -1.063 -0.245 -0.573 D 44 40 6 45 6 0 0 37 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 42 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 41 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 53 g c - - MP 47 46 6 51 6 2 2 40 72 -11.650 -11.590 -0.170 -4.697 -8.192 -3.862 -1.758 -1.298 -1.658 1.875 -2.469 -4.168 1.344 -3.117 -2.912 2.047 -2.537 0.901 0.364 -3.457 -0.807 -2.588 ML 48 46 6 51 6 1 1 39 71 -7.244 -7.591 -0.514 -1.999 -7.440 -4.970 -0.114 0.404 -0.412 0.003 MR 49 46 6 51 6 1 1 39 71 -7.217 -5.946 -1.240 -5.924 -1.058 -4.138 0.785 -0.676 -0.395 -0.167 D 50 46 6 51 6 0 0 35 66 -10.075 -8.773 -4.570 -5.252 -5.270 -0.148 IL 51 51 5 51 6 1 1 40 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 40 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 52 g c - - MP 53 52 6 57 6 2 2 38 70 -11.509 -11.448 -0.328 -5.961 -10.504 -2.427 -3.069 -2.520 -3.264 1.237 -2.801 -3.374 2.031 -3.039 -2.792 2.185 -3.196 -0.858 1.294 -3.404 -0.661 -1.910 ML 54 52 6 57 6 1 1 38 69 -8.224 -8.570 -0.449 -2.045 -8.420 -5.949 0.312 0.287 -1.085 0.094 MR 55 52 6 57 6 1 1 37 69 -7.236 -5.965 -1.213 -5.944 -1.077 -4.157 0.176 -0.698 0.457 -0.183 D 56 52 6 57 6 0 0 33 64 -12.183 -10.881 -6.678 -7.360 -7.378 -0.033 IL 57 57 5 57 6 1 1 38 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 38 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 51 c g - - MP 59 58 6 63 4 2 2 37 69 -10.267 -0.462 -4.585 -2.112 -4.309 -4.348 -4.444 0.710 -3.133 -5.293 2.669 -4.464 -3.378 1.090 -3.549 -1.252 1.909 -4.599 0.006 -2.817 ML 60 58 6 63 4 1 1 35 67 -4.852 -0.832 -1.600 -3.763 -0.122 -0.682 -1.049 0.981 MR 61 58 6 63 4 1 1 32 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 62 58 6 63 4 0 0 32 64 -9.139 -2.598 -6.836 -0.279 IL 63 63 5 63 4 1 1 35 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 64 64 6 64 3 1 1 35 67 -0.831 -1.438 -3.863 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - g - - - ML 65 64 6 67 3 1 1 20 37 -0.608 -1.545 -9.400 -0.478 0.150 0.566 -0.532 D 66 64 6 67 3 0 0 15 33 -12.049 -0.017 -6.441 IL 67 67 3 67 3 1 1 20 36 -1.636 -0.567 -8.174 0.000 0.000 0.000 0.000 [ MATL 16 ] 26 - A - - - ML 68 67 3 70 3 1 1 15 33 -11.677 -0.002 -10.331 1.004 -1.113 -0.095 -0.747 D 69 67 3 70 3 0 0 16 35 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 27 - u - - - ML 71 70 3 73 3 1 1 13 32 -11.677 -0.002 -10.331 -0.410 -0.235 -0.792 0.864 D 72 70 3 73 3 0 0 15 34 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 28 - g - - - ML 74 73 3 76 3 1 1 12 31 -11.677 -0.104 -3.856 0.226 -0.603 0.258 -0.035 D 75 73 3 76 3 0 0 14 33 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 29 - g - - - ML 77 76 3 79 3 1 1 11 29 -11.575 -0.416 -1.999 0.178 -0.402 0.248 -0.113 D 78 76 3 79 3 0 0 11 29 -9.388 -4.901 -0.051 IL 79 79 3 79 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 30 - u - - - ML 80 79 3 82 2 1 1 1 1 * 0.000 -0.362 -0.519 0.232 0.433 D 81 79 3 82 2 0 0 0 0 * 0.000 IL 82 82 3 82 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 83 82 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 84 15 1 85 3 0 3 72 126 -11.677 -0.002 -10.331 IL 85 85 2 85 3 1 1 74 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 59 - A - - - ML 86 85 2 88 3 1 3 72 126 -11.677 -0.002 -10.331 1.993 -7.808 -7.091 -7.232 D 87 85 2 88 3 0 0 70 123 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 73 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 60 - G - - - ML 89 88 3 91 3 1 3 71 125 -11.677 -0.002 -10.331 -6.323 -8.082 1.991 -7.082 D 90 88 3 91 3 0 0 69 122 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 72 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 61 - G - - - ML 92 91 3 94 3 1 3 70 124 -11.677 -0.002 -10.331 -6.323 -8.082 1.991 -7.082 D 93 91 3 94 3 0 0 68 121 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 71 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 62 - U - - - ML 95 94 3 97 3 1 2 69 123 -11.677 -0.002 -10.331 -0.315 -1.170 -1.360 1.240 D 96 94 3 97 3 0 0 67 120 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 70 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 63 - u - - - ML 98 97 3 100 3 1 2 68 122 -11.677 -0.002 -10.331 0.073 -0.849 -0.837 0.874 D 99 97 3 100 3 0 0 66 119 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 69 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 64 - u - - - ML 101 100 3 103 3 1 1 67 121 -11.677 -0.010 -7.178 0.518 -0.651 -1.228 0.589 D 102 100 3 103 3 0 0 64 117 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 68 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 65 - a - - - ML 104 103 3 106 3 1 1 66 120 -11.668 -0.064 -4.533 0.529 -0.574 -1.057 0.491 D 105 103 3 106 3 0 0 61 115 -6.976 -2.489 -0.297 IL 106 106 3 106 3 1 1 67 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 66 - u - - - ML 107 106 3 109 3 1 1 66 119 -11.606 -0.401 -2.044 0.074 -0.303 -0.255 0.377 D 108 106 3 109 3 0 0 57 110 -8.951 -4.464 -0.070 IL 109 109 3 109 3 1 1 67 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 67 - g - - - ML 110 109 3 112 5 1 1 65 119 -1.357 -0.719 -9.977 -10.189 -11.081 -0.511 -0.982 0.779 0.106 D 111 109 3 112 5 0 0 49 102 -9.281 -0.031 -8.542 -6.917 -6.830 IL 112 112 3 112 5 1 1 67 120 -0.500 -1.787 -9.177 -11.009 -10.283 0.000 0.000 0.000 0.000 [ MATP 32 ] 74 95 c g - - MP 113 112 3 117 6 2 2 31 50 -11.687 -11.627 -0.004 -10.403 -10.683 -11.078 -2.139 -2.021 -2.711 0.660 -3.334 -4.197 2.615 -2.249 -3.413 1.572 -3.986 -0.484 1.054 -2.167 -0.420 -1.281 ML 114 112 3 117 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 3 117 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 3 117 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 75 94 G C - - MP 119 118 6 123 6 2 2 29 48 -11.687 -11.627 -0.071 -4.513 -8.277 -11.078 -5.765 -1.960 -5.584 1.054 -6.714 -6.180 -1.780 -6.273 -4.203 3.446 -6.268 -0.563 0.437 -5.439 -2.460 -3.307 ML 120 118 6 123 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 76 93 a u - - MP 125 124 6 129 6 2 2 27 46 -11.620 -11.559 -0.228 -2.819 -8.306 -11.010 -3.882 -2.685 -4.045 2.268 -3.928 -3.799 1.854 -4.312 -4.110 1.392 -4.661 0.193 1.136 -4.172 -0.293 -2.635 ML 126 124 6 129 6 1 1 27 45 -8.395 -8.741 -0.209 -3.150 -8.591 -6.120 1.441 -1.112 -1.505 -1.090 MR 127 124 6 129 6 1 1 26 45 -7.227 -5.956 -1.226 -5.934 -1.068 -4.148 0.077 0.247 -0.610 0.143 D 128 124 6 129 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 77 92 U A - - MP 131 130 6 135 6 2 2 26 44 -3.203 -4.884 -0.225 -10.191 -10.471 -10.866 -1.511 -4.370 -3.382 1.369 -3.233 -5.293 0.593 -2.447 -4.452 -0.613 -5.008 -1.436 3.237 -4.595 -1.183 -3.497 ML 132 130 6 135 6 1 1 24 43 -5.207 -10.143 -0.116 -4.552 -9.993 -7.522 0.815 -0.199 -1.653 0.072 MR 133 130 6 135 6 1 1 25 43 -2.744 -5.938 -1.847 -5.917 -1.051 -4.130 0.079 -0.383 -0.514 0.562 D 134 130 6 135 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 25 44 -5.355 -0.250 -3.061 -7.273 -8.049 -7.709 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 24 43 -4.851 -0.079 -8.363 -6.530 -7.636 0.000 0.000 0.000 0.000 [ MATP 36 ] 79 90 G C - - MP 137 136 6 141 6 2 2 23 42 -11.687 -11.627 -0.004 -10.403 -10.683 -11.078 -8.829 -6.216 -9.601 0.986 -10.665 -7.681 -5.360 -9.608 -7.535 3.784 -7.823 -2.669 -5.618 -7.987 -7.617 -8.317 ML 138 136 6 141 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 80 89 G C - - MP 143 142 6 147 6 2 2 21 40 -11.687 -11.627 -0.004 -10.403 -10.683 -11.078 -9.653 -6.251 -12.086 -1.660 -11.248 -3.047 -5.543 -11.504 -7.623 3.948 -7.811 -4.190 -5.913 -7.874 -7.995 -11.264 ML 144 142 6 147 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 81 88 U G - - MP 149 148 6 153 4 2 2 19 38 -10.760 -10.967 -0.004 -9.381 -8.593 -8.870 -7.911 -5.107 -6.262 -8.056 -0.112 -7.177 -8.014 -5.080 -8.134 -7.268 -1.278 -8.428 3.863 -6.816 ML 150 148 6 153 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 152 148 6 153 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 82 - C - - - ML 155 154 6 157 3 1 1 16 35 -11.677 -0.002 -10.331 -7.135 1.991 -7.598 -6.186 D 156 154 6 157 3 0 0 18 36 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 83 - G - - - ML 158 157 3 160 3 1 1 15 33 -11.677 -0.007 -7.865 -6.323 -8.082 1.991 -7.082 D 159 157 3 160 3 0 0 17 35 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 84 - G - - - ML 161 160 3 163 3 1 1 14 32 -11.672 -0.002 -10.326 -4.183 -7.961 1.976 -6.999 D 162 160 3 163 3 0 0 15 34 -6.686 -0.953 -1.078 IL 163 163 3 163 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 85 - G - - - ML 164 163 3 166 3 1 1 12 31 -11.677 -0.002 -10.331 -6.323 -8.082 1.991 -7.082 D 165 163 3 166 3 0 0 15 33 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 86 - C - - - ML 167 166 3 169 3 1 1 10 29 -11.677 -0.002 -10.331 -7.135 1.991 -7.598 -6.186 D 168 166 3 169 3 0 0 13 32 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 87 - C - - - ML 170 169 3 172 2 1 1 1 1 * 0.000 -7.135 1.991 -7.598 -6.186 D 171 169 3 172 2 0 0 0 0 * 0.000 IL 172 172 3 172 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 173 172 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME nhaA-I ACC RF03057 DESC nhaA-I RNA LENG 55 MAXL 108 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Aug 14 11:42:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03057/CM NSEQ 281 EFFN 272.840454 CKSUM 1922787463 STATS LOCAL MSV -8.1762 0.72412 STATS LOCAL VITERBI -8.6547 0.72412 STATS LOCAL FORWARD -3.0872 0.72412 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.83233 1.38392 0.95039 1.59566 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 0.00000 * 1 4.68662 4.56346 0.03166 4.46357 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 2 7.40510 8.61767 0.01331 4.38738 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 3 7.40313 8.63038 0.00115 7.92857 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 4 9.19169 8.30058 10.19768 0.00039 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 5 4.24219 1.81389 0.32786 2.28140 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00989 7.94874 4.65766 1.46634 0.26236 1.09861 0.40547 6 5.97075 0.57688 3.71565 0.88804 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.01297 7.93956 4.37991 1.46634 0.26236 0.07179 2.66972 7 1.83069 1.12376 0.97368 1.98813 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.19812 7.93661 1.71832 1.46634 0.26236 0.33446 1.25781 8 2.03492 1.44155 0.75743 1.80864 8 g - - < 1.38629 1.38629 1.38629 1.38629 0.07057 7.75044 2.69254 1.46634 0.26236 0.28277 1.40118 9 1.53091 1.52793 1.08628 1.47313 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.01398 7.84445 4.30558 1.46634 0.26236 0.03633 3.33315 10 1.16887 1.77907 0.81901 2.53050 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.08535 7.93396 2.50777 1.46634 0.26236 1.58659 0.22894 11 1.81473 1.21761 1.03711 1.67823 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.23416 7.85255 1.56839 1.46634 0.26236 3.28969 0.03798 12 2.34611 0.85171 1.84949 1.13863 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.35865 7.62367 1.20100 1.46634 0.26236 6.67068 0.00127 13 1.88353 1.19782 0.90649 1.95083 13 g - - _ 1.38629 1.38629 1.38629 1.38629 1.18594 0.36551 7.26642 0.38068 1.15011 0.00143 6.55364 14 0.64607 2.24013 1.42326 2.05163 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 15 1.76050 1.54094 1.97170 0.74520 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 16 1.23624 1.82675 1.15667 1.45218 28 g - - _ 1.38629 1.38629 1.38629 1.38629 0.07341 7.94874 2.65324 1.46634 0.26236 1.09861 0.40547 17 1.27600 1.66431 1.16084 1.52188 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.19647 7.87609 1.72600 1.46634 0.26236 0.99631 0.46083 18 1.76575 1.76717 1.15598 1.06893 30 u - - _ 1.38629 1.38629 1.38629 1.38629 1.91061 0.37474 1.80457 0.79098 0.60404 0.65645 0.73124 19 1.38306 2.02829 0.69767 2.12121 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.08828 7.68698 2.47651 1.46634 0.26236 0.34036 1.24310 20 1.85009 1.06957 1.16231 1.67742 52 c - - > 1.38629 1.38629 1.38629 1.38629 0.01739 7.80905 4.08445 1.46634 0.26236 0.10002 2.35194 21 2.49650 1.13279 1.59929 0.93279 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.03255 7.92230 3.45261 1.46634 0.26236 0.02636 3.64913 22 1.53614 1.39949 1.09545 1.59121 54 g - - > 1.38629 1.38629 1.38629 1.38629 0.01055 7.91778 4.59222 1.46634 0.26236 0.13833 2.04648 23 1.65643 0.96598 1.25173 1.94800 55 c - - > 1.38629 1.38629 1.38629 1.38629 0.03671 7.93582 3.33294 1.46634 0.26236 0.05216 2.97947 24 2.46550 1.04395 0.93887 1.76082 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.01862 7.91324 4.01289 1.46634 0.26236 0.01985 3.92958 25 1.55808 4.44030 0.28492 3.66538 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.00072 7.93149 7.93149 1.46634 0.26236 0.03967 3.24687 26 3.55065 0.34340 1.44267 3.66330 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 27 0.00095 8.41396 7.88389 7.95668 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 28 7.40313 8.63038 0.00115 7.92857 60 G - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 29 7.40313 8.63038 0.00115 7.92857 61 G - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 30 1.65477 2.29227 2.43339 0.47789 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 31 1.35903 2.03454 2.01610 0.73569 63 u - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 32 1.00605 1.87018 2.35728 0.95304 64 u - - - 1.38629 1.38629 1.38629 1.38629 0.00697 7.94874 5.02251 1.46634 0.26236 1.09861 0.40547 33 0.99772 1.80708 2.20703 1.02968 65 a - - - 1.38629 1.38629 1.38629 1.38629 0.04547 7.94248 3.12139 1.46634 0.26236 3.02806 0.04962 34 1.36170 1.58909 1.54538 1.11953 66 u - - - 1.38629 1.38629 1.38629 1.38629 0.28868 7.89776 1.38479 1.46634 0.26236 4.96813 0.00698 35 1.87231 2.14337 0.77323 1.31882 67 g - - - 1.38629 1.38629 1.38629 1.38629 0.53439 0.88315 7.61007 1.28473 0.32397 0.00245 6.01198 36 2.19585 0.78701 1.40827 1.66619 74 c - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 37 1.99427 5.43737 0.27571 2.29760 75 G - - < 1.38629 1.38629 1.38629 1.38629 0.00373 7.94874 5.69296 1.46634 0.26236 1.09861 0.40547 38 0.98522 1.47752 1.48329 1.76288 76 a - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94572 7.94572 1.46634 0.26236 0.19028 1.75290 39 1.41179 2.37827 3.46162 0.45854 77 U - - < 1.38629 1.38629 1.38629 1.38629 0.11876 2.19264 7.94874 0.00631 5.06800 1.09861 0.40547 40 2.02663 7.31118 0.14300 7.13075 79 G - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 41 3.99105 4.74827 0.02814 7.41378 80 G - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 42 7.28568 3.07001 7.31577 0.04895 81 U - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 43 8.46650 0.00086 8.90635 7.57317 82 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 44 7.40313 8.63038 0.00115 7.92857 83 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00437 7.94874 5.52011 1.46634 0.26236 1.09861 0.40547 45 4.38889 8.62986 0.01304 7.92209 84 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94508 7.94508 1.46634 0.26236 0.16239 1.89786 46 7.40313 8.63038 0.00115 7.92857 85 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 47 8.46650 0.00086 8.90635 7.57317 86 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 48 8.46650 0.00086 8.90635 7.57317 87 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 49 3.89409 7.41568 0.02202 7.11394 88 G - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 50 7.31037 0.02045 7.37313 3.96628 89 C - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 51 7.05508 0.15128 7.18723 1.97489 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.33746 1.97578 1.91214 0.00509 5.28388 1.09861 0.40547 52 0.34086 4.08477 2.60737 1.61805 92 A - - > 1.38629 1.38629 1.38629 1.38629 0.06042 7.78926 2.84358 1.46634 0.26236 0.00477 5.34822 53 2.05422 1.75503 1.28072 0.86496 93 u - - > 1.38629 1.38629 1.38629 1.38629 0.00074 7.89820 7.89820 1.46634 0.26236 0.01413 4.26666 54 2.41131 0.30528 4.30968 1.83291 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 55 2.04615 1.48406 0.72045 1.84818 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.00035 7.94839 * 1.46634 0.26236 0.00000 * //