INFERNAL1/a [1.1.5 | Sep 2023] NAME RAGATH-30 ACC RF03055 DESC RAGATH-30 RNA STATES 186 NODES 54 CLEN 59 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 18:07:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03055/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 33 EFFN 5.361694 CKSUM 2033658646 NULL 0.000 0.000 0.000 0.000 GA 59.50 TC 60.60 NC 42.30 EFP7GF -12.1814 0.71908 ECMLC 0.71172 -7.18633 1.88261 1600000 762718 0.001573 ECMGC 0.35735 -19.75860 -2.82799 1600000 169678 0.002357 ECMLI 0.55070 -8.77299 2.50322 1600000 597125 0.002010 ECMGI 0.37373 -15.21682 0.14486 1600000 124571 0.003211 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 80 106 -7.930 -8.137 -0.068 -4.695 IL 1 1 2 1 4 1 22 83 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 82 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 22 80 106 -8.855 -0.011 -7.509 -1.856 -3.791 1.826 -3.236 D 4 2 3 5 3 0 17 78 104 -6.733 -0.910 -1.125 IL 5 5 3 5 3 1 21 81 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 22 79 105 -8.894 -0.011 -7.548 -1.381 -1.841 -2.044 1.630 D 7 5 3 8 3 0 15 77 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 80 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 21 78 104 -8.894 -0.011 -7.548 1.087 -0.946 -0.593 -0.529 D 10 8 3 11 3 0 15 76 102 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 79 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 20 77 103 -8.894 -0.011 -7.548 1.828 -3.320 -2.133 -3.046 D 13 11 3 14 3 0 14 75 101 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 78 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 20 76 102 -8.894 -0.011 -7.548 1.837 -3.371 -2.230 -3.100 D 16 14 3 17 3 0 13 74 100 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 77 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 19 75 101 -8.894 -0.011 -7.548 1.806 -2.956 -2.861 -2.077 D 19 17 3 20 3 0 12 73 99 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 76 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 18 74 100 -8.894 -0.011 -7.548 1.925 -4.165 -3.649 -3.872 D 22 20 3 23 3 0 12 72 98 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 16 75 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 18 73 99 -8.894 -0.011 -7.548 -3.210 -2.936 -3.993 1.887 D 25 23 3 26 3 0 11 71 97 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 16 74 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 17 72 98 -8.894 -0.011 -7.548 1.925 -4.165 -3.649 -3.872 D 28 26 3 29 3 0 10 70 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 15 73 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 16 71 97 -8.894 -0.011 -7.548 1.925 -4.165 -3.649 -3.872 D 31 29 3 32 3 0 9 69 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 14 72 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 16 70 96 -8.894 -0.011 -7.548 -3.317 -4.735 1.927 -4.059 D 34 32 3 35 3 0 9 68 94 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 71 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 15 69 95 -8.894 -0.011 -7.548 1.801 -2.286 -2.762 -2.610 D 37 35 3 38 3 0 8 67 93 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 70 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 14 68 94 -8.894 -0.011 -7.548 1.525 -2.108 -1.050 -1.296 D 40 38 3 41 3 0 7 66 92 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 12 69 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 1 13 67 93 -1.864 -0.474 -7.548 0.329 -0.965 -1.542 0.917 D 43 41 3 44 3 0 7 64 90 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 67 93 -1.334 -0.774 -5.749 0.000 0.000 0.000 0.000 [ MATL 15 ] 20 - U - - - ML 45 44 3 47 3 1 13 64 90 -8.894 -0.011 -7.548 -1.126 -1.628 -1.035 1.449 D 46 44 3 47 3 0 6 63 89 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 11 66 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 21 - U - - - ML 48 47 3 50 3 1 12 63 89 -8.894 -0.011 -7.548 -0.567 -1.066 -2.039 1.381 D 49 47 3 50 3 0 5 62 88 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 10 65 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - A - - - ML 51 50 3 53 3 1 11 62 88 -8.894 -0.011 -7.548 1.801 -3.191 -1.874 -2.906 D 52 50 3 53 3 0 5 61 87 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 64 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 23 - U - - - ML 54 53 3 56 3 1 11 61 87 -8.894 -0.011 -7.548 -1.801 -1.393 -2.003 1.624 D 55 53 3 56 3 0 4 60 86 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 9 63 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 24 - C - - - ML 57 56 3 59 3 1 10 60 86 -8.894 -0.011 -7.548 -3.820 1.908 -4.535 -2.908 D 58 56 3 59 3 0 4 59 85 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 62 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - G - - - ML 60 59 3 62 3 1 9 59 85 -8.894 -0.011 -7.548 -3.317 -4.735 1.927 -4.059 D 61 59 3 62 3 0 3 58 84 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 61 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 26 - A - - - ML 63 62 3 65 3 1 8 58 84 -8.894 -0.011 -7.548 1.925 -4.165 -3.649 -3.872 D 64 62 3 65 3 0 3 57 83 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 60 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - A - - - ML 66 65 3 68 3 1 7 57 83 -8.894 -0.011 -7.548 1.632 -1.791 -2.260 -1.314 D 67 65 3 68 3 0 3 56 82 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 59 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - u - - - ML 69 68 3 71 3 1 6 56 82 -8.894 -0.011 -7.548 0.196 -0.468 -1.489 0.828 D 70 68 3 71 3 0 2 55 81 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 58 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - a - - - ML 72 71 3 74 3 1 5 55 81 -8.894 -0.011 -7.548 0.791 -0.777 -1.096 0.285 D 73 71 3 74 3 0 2 54 80 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 57 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - a - - - ML 75 74 3 77 3 1 4 54 80 -8.894 -0.011 -7.548 0.680 -1.306 -0.055 0.044 D 76 74 3 77 3 0 2 53 79 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 56 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - - - ML 78 77 3 80 3 1 3 53 79 -9.239 -0.010 -7.557 1.230 -2.481 0.293 -1.998 D 79 77 3 80 3 0 1 52 78 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 3 54 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 67 - A - - MR 81 80 3 83 3 1 2 52 78 -9.239 -0.010 -7.557 1.786 -3.129 -1.746 -2.838 D 82 80 3 83 3 0 0 51 77 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 53 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 66 - A - - MR 84 83 3 86 2 1 1 51 77 -9.418 -0.002 1.693 -2.457 -2.478 -1.304 D 85 83 3 86 2 0 0 50 76 -4.432 -0.068 IR 86 86 3 86 2 1 1 52 78 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 29 ] - - - - - - B 87 86 3 88 132 0 0 50 76 [ BEGL 30 ] - - - - - - S 88 87 1 89 4 0 0 34 60 -0.030 -7.411 -6.818 -7.458 [ MATP 31 ] 32 48 c g - - MP 89 88 1 93 6 2 2 34 60 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -1.544 -3.515 -3.595 0.174 -2.845 -4.370 2.684 -3.438 -3.574 0.317 -4.080 -1.528 2.254 -3.780 -0.161 -2.503 ML 90 88 1 93 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 1 93 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 1 93 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 47 u a - - MP 95 94 6 99 6 2 2 32 58 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -4.910 -4.878 -4.628 -0.961 -3.285 -5.071 2.734 -4.080 -4.632 -0.796 -4.948 -2.782 2.826 -4.969 -0.927 -3.438 ML 96 94 6 99 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 46 u a - - MP 101 100 6 105 6 2 2 30 56 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -4.560 -4.503 -4.393 -0.605 -3.188 -4.942 2.517 -3.935 -4.377 -0.433 -4.755 -2.391 2.771 -4.679 0.364 -3.201 ML 102 100 6 105 6 1 1 28 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 25 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 29 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 45 G C - - MP 107 106 6 111 6 2 2 28 54 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -4.453 -3.087 -4.429 2.361 -5.505 -5.208 -0.751 -4.843 -4.428 3.080 -4.836 -0.635 -1.004 -4.499 -2.740 -3.285 ML 108 106 6 111 6 1 1 26 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 26 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 24 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 27 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 27 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 44 c g - - MP 113 112 6 117 4 2 2 26 52 -4.498 -8.137 -0.087 -6.551 -3.817 -3.754 -3.832 0.044 -2.945 -4.574 2.619 -3.578 -3.797 0.209 -4.281 -1.678 2.324 -4.033 0.377 -1.344 ML 114 112 6 117 4 1 1 25 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 24 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 24 50 -4.568 -4.250 -2.265 -0.520 IL 117 117 5 117 4 1 1 28 54 -1.022 -3.398 -1.337 -5.884 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - u - - - ML 119 118 6 121 3 1 1 16 34 -8.894 -0.011 -7.548 0.385 -1.190 -0.579 0.666 D 120 118 6 121 3 0 0 16 34 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - u - - - ML 122 121 3 124 3 1 1 14 33 -8.894 -0.011 -7.548 0.411 -0.669 -0.780 0.545 D 123 121 3 124 3 0 0 15 33 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - A - - - ML 125 124 3 127 3 1 1 12 31 -8.894 -0.011 -7.548 1.442 -1.197 -1.933 -0.773 D 126 124 3 127 3 0 0 13 32 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - a - - - ML 128 127 3 130 2 1 1 1 1 * 0.000 0.841 -2.460 0.821 -1.944 D 129 127 3 130 2 0 0 0 0 * 0.000 IL 130 130 3 130 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 131 130 3 -1 0 0 0 0 0 [ BEGR 41 ] - - - - - - S 132 87 1 133 3 0 0 30 48 -8.894 -0.070 -4.472 IL 133 133 2 133 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - A - - - ML 134 133 2 136 5 1 1 30 48 -7.879 -0.023 -7.694 -7.907 -8.798 1.919 -4.063 -3.553 -3.765 D 135 133 2 136 5 0 0 29 47 -5.438 -0.528 -4.700 -3.075 -2.987 IL 136 136 3 136 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 50 65 u a - - MP 137 136 3 141 6 2 2 29 47 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -2.149 -1.481 -1.296 1.342 -2.328 -3.139 1.087 -2.659 -2.402 1.843 -2.948 -0.125 1.879 -2.426 -0.461 -1.104 ML 138 136 3 141 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 51 64 C G - - MP 143 142 6 147 6 2 2 27 45 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -6.588 -6.667 -5.894 -2.850 -4.313 -6.038 3.887 -5.355 -6.104 -2.784 -6.047 -4.747 -1.109 -6.521 -2.166 -4.907 ML 144 142 6 147 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 52 63 U A - - MP 149 148 6 153 6 2 2 25 43 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -6.021 -6.062 -5.609 -2.238 -4.166 -5.937 0.171 -5.007 -5.635 -2.118 -5.896 -4.099 3.745 -5.997 -0.510 -4.196 ML 150 148 6 153 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 53 62 G C - - MP 155 154 6 159 6 2 2 23 41 -9.564 -9.503 -0.015 -8.279 -8.559 -8.954 -4.705 -3.175 -4.670 0.900 -5.789 -5.036 -0.915 -5.176 -4.606 3.452 -4.938 0.695 -1.168 -4.500 -2.930 -3.565 ML 156 154 6 159 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 54 61 C G - - MP 161 160 6 165 6 2 2 21 39 -9.564 -9.503 -0.031 -8.279 -8.559 -6.315 -5.061 -5.046 -4.722 -1.117 -3.319 -5.118 3.324 -4.135 -4.736 -0.958 -5.023 -2.963 1.964 -5.089 -0.964 -3.533 ML 162 160 6 165 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 55 60 c g - - MP 167 166 6 171 4 2 2 19 37 -7.902 -8.109 -0.027 -6.523 -2.368 -2.497 -0.935 0.997 -2.288 -3.382 2.389 -2.725 -2.571 0.709 -3.131 -0.908 1.590 -2.682 0.284 -0.773 ML 168 166 6 171 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 170 166 6 171 4 0 0 19 37 -4.866 -4.547 -1.492 -0.817 IL 171 171 5 171 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 172 172 6 172 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - a - - - ML 173 172 6 175 3 1 1 15 34 -8.894 -0.011 -7.548 0.957 -1.819 0.327 -0.943 D 174 172 6 175 3 0 0 15 34 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - g - - - ML 176 175 3 178 3 1 1 14 32 -8.894 -0.011 -7.548 -0.292 -1.584 0.930 -0.082 D 177 175 3 178 3 0 0 14 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - G - - - ML 179 178 3 181 3 1 1 12 31 -8.894 -0.564 -1.637 -0.373 -1.246 1.187 -0.918 D 180 178 3 181 3 0 0 13 32 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -0.839 -1.380 -1.972 1.487 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RAGATH-30 ACC RF03055 DESC RAGATH-30 RNA LENG 59 MAXL 129 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 18:07:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03055/CM NSEQ 33 EFFN 8.938843 CKSUM 2033658646 STATS LOCAL MSV -7.5594 0.71908 STATS LOCAL VITERBI -8.3622 0.71908 STATS LOCAL FORWARD -3.5106 0.71908 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.94100 1.88584 1.47432 1.47347 1.38629 1.38629 1.38629 1.38629 0.04726 4.79626 3.27286 1.46634 0.26236 0.00000 * 1 2.87353 4.52923 0.08705 4.13016 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76617 4.76617 1.46634 0.26236 0.36182 1.19207 2 2.59308 3.06280 3.02679 0.18635 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 3 0.56128 2.12848 1.83300 1.89335 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 4 0.08291 4.19286 3.05296 4.06035 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 5 0.07739 4.23101 3.13896 4.09821 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 6 0.09367 3.88600 3.87437 3.03394 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 7 0.02736 4.91897 4.53425 4.71600 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 8 4.24609 3.99103 4.80022 0.04189 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 9 0.02736 4.91897 4.53425 4.71600 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 10 0.02736 4.91897 4.53425 4.71600 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 11 4.23710 5.28620 0.02861 4.74549 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 12 0.09631 3.12809 3.78148 3.67995 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 13 0.26251 3.24040 2.19503 2.52099 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 14 1.13281 2.22171 2.72466 0.68541 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.38154 1.17463 4.79626 0.55346 0.85557 1.09861 0.40547 15 2.48199 2.91045 2.14925 0.29383 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 16 1.87574 2.30468 3.20128 0.34778 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 17 0.09954 4.09777 2.82754 3.96434 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 18 3.09616 2.55495 2.96060 0.19202 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 19 4.63724 0.03517 5.03375 3.99779 24 C - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 20 4.23710 5.28620 0.02861 4.74549 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 21 0.02736 4.91897 4.53425 4.71600 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 22 0.19522 2.81779 3.38285 2.48101 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 23 1.23953 1.75426 2.65726 0.76077 28 u - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 24 0.78104 2.01641 2.27803 1.18270 29 a - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 25 0.86841 2.53047 1.39355 1.37608 30 a - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 26 0.47382 3.74312 1.12952 3.48955 31 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 27 2.53380 0.78037 2.62602 0.94151 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 28 3.82872 0.83111 3.63745 0.66091 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 29 3.52533 0.99395 3.30468 0.57317 34 U - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 30 0.98960 3.64997 0.56075 3.45771 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 31 2.92907 0.86417 2.68372 0.78341 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.06094 2.97861 4.79626 1.14389 0.38357 1.09861 0.40547 32 1.09766 2.43643 1.81441 0.87721 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 33 1.07586 1.92608 1.98369 0.97892 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 34 0.30746 2.34129 3.13747 2.07871 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 35 0.75054 3.69345 0.75585 3.39956 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 36 1.03109 2.86102 0.69609 2.43451 44 g - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 37 3.68506 0.60420 3.45007 0.92470 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 38 0.72077 3.46902 0.81018 3.27818 46 a - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 39 0.69789 3.78810 0.79498 3.57078 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 40 1.00420 2.79878 0.69257 2.62431 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.06221 4.79626 2.95550 1.46634 0.26236 1.09861 0.40547 41 0.02927 4.85044 4.46820 4.65047 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.01743 4.75148 4.75148 1.46634 0.26236 0.27566 1.42327 42 1.49482 1.99661 1.18554 1.09561 50 u - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 43 5.02091 0.03763 4.98307 3.75182 51 C - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 44 4.68103 3.08998 4.59887 0.06703 52 U - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 45 2.16793 3.65830 0.18698 3.49510 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 46 3.89599 0.38133 3.72375 1.29983 54 C - - < 1.38629 1.38629 1.38629 1.38629 0.03759 4.79626 3.55339 1.46634 0.26236 1.09861 0.40547 47 1.74822 0.94205 2.08010 1.16742 55 c - - < 1.38629 1.38629 1.38629 1.38629 0.01701 4.77568 4.77568 1.46634 0.26236 0.45559 1.00532 48 0.65768 3.04929 1.09666 2.29690 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 49 1.69846 2.80810 0.63988 1.47247 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 50 1.75635 2.36274 0.46711 2.24102 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.45426 4.79626 1.03052 1.46634 0.26236 1.09861 0.40547 51 2.18296 2.71485 3.18557 0.24882 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05829 4.36768 3.12481 1.46634 0.26236 0.04526 3.11785 52 1.53927 2.25330 0.71273 1.66018 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.01701 4.77568 4.77568 1.46634 0.26236 0.45559 1.00532 53 1.36803 3.87788 0.35845 3.65195 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 54 3.71923 0.32244 3.47005 1.51298 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 55 0.10899 4.73123 2.49880 4.40126 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 56 3.98761 5.08370 0.03344 4.81057 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 57 1.23665 1.30685 1.68769 1.37032 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 58 0.15900 3.51886 3.58574 2.41182 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.79626 4.79626 1.46634 0.26236 1.09861 0.40547 59 0.10898 4.05413 2.71739 3.91932 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.00836 4.78796 * 1.46634 0.26236 0.00000 * //