INFERNAL1/a [1.1.5 | Sep 2023] NAME RT-13 ACC RF03017 DESC RT-13 RNA STATES 210 NODES 53 CLEN 67 W 87 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 07:13:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03017/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 2.256592 CKSUM 2896365265 NULL 0.000 0.000 0.000 0.000 GA 69.10 TC 69.50 NC 47.60 EFP7GF -10.6763 0.71906 ECMLC 0.59123 -7.39351 2.75133 1600000 483098 0.002484 ECMGC 0.42953 -15.39863 -2.87296 1600000 86818 0.004607 ECMLI 0.58831 -5.81037 3.93837 1600000 371536 0.003230 ECMGI 0.46428 -10.75768 0.36880 1600000 70074 0.005708 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 87 109 -7.076 -7.283 -0.049 -5.697 IL 1 1 2 1 4 1 22 90 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 89 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 22 87 109 -8.084 -0.019 -6.738 -1.834 -3.092 1.775 -2.480 D 4 2 3 5 3 0 17 85 107 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 88 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 22 86 108 -8.084 -0.019 -6.738 -1.173 1.265 -2.007 -0.145 D 7 5 3 8 3 0 16 84 106 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 87 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 21 85 107 -8.084 -0.019 -6.738 -1.834 -3.092 1.775 -2.480 D 10 8 3 11 3 0 16 83 105 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 86 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 20 84 106 -8.084 -0.019 -6.738 -1.710 -1.667 -2.454 1.677 D 13 11 3 14 3 0 15 82 104 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 19 85 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 19 83 105 -8.084 -0.019 -6.738 -1.834 -3.092 1.775 -2.480 D 16 14 3 17 3 0 14 81 103 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 84 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 19 82 104 -8.467 -0.017 -6.784 -2.034 1.695 -2.865 -1.389 D 19 17 3 20 3 0 14 80 103 -5.620 -0.734 -1.403 IL 20 20 3 20 3 1 17 82 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 75 - C - - MR 21 20 3 23 3 1 18 81 103 -8.467 -0.017 -6.784 -2.034 1.695 -2.865 -1.389 D 22 20 3 23 3 0 12 79 101 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 81 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 74 - G - - MR 24 23 3 26 3 1 17 80 102 -8.467 -0.017 -6.784 -1.834 -3.092 1.775 -2.480 D 25 23 3 26 3 0 11 78 100 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 80 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 73 - U - - MR 27 26 3 29 3 1 17 79 101 -8.467 -0.017 -6.784 -1.710 -1.667 -2.454 1.677 D 28 26 3 29 3 0 10 77 99 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 79 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 72 - c - - MR 30 29 3 32 3 1 16 78 100 -8.467 -0.017 -6.784 -0.675 0.918 -1.146 0.046 D 31 29 3 32 3 0 10 76 98 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 14 78 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - U - - MR 33 32 3 35 5 1 16 77 99 -7.198 -0.036 -7.014 -7.226 -8.117 -1.710 -1.667 -2.454 1.677 D 34 32 3 35 5 0 9 75 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 13 77 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 70 G C - - MP 36 35 3 40 6 2 17 76 98 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.979 -3.208 -5.104 0.040 -5.566 -4.785 -0.872 -5.361 -4.479 3.690 -4.800 -0.917 -1.251 -4.622 -2.922 -3.977 ML 37 35 3 40 6 1 11 74 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 11 74 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 7 72 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 12 75 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 13 75 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 69 U A - - MP 42 41 6 46 6 2 17 74 96 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.476 -4.308 -4.282 -0.583 -3.165 -4.820 1.168 -3.880 -4.285 -0.368 -4.643 -2.197 3.449 -4.616 -0.834 -3.078 ML 43 41 6 46 6 1 11 72 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 10 72 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 6 70 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 12 73 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 12 73 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 68 u a - - MP 48 47 6 52 6 2 16 72 94 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -3.556 -3.518 -3.492 0.192 -2.529 -4.121 2.285 -3.208 -3.498 0.407 -3.923 -1.529 2.552 -3.728 0.511 -2.391 ML 49 47 6 52 6 1 10 70 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 10 70 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 6 68 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 11 71 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 12 71 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 67 C G - - MP 54 53 6 58 6 2 16 70 92 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -3.929 -3.866 -3.753 -0.078 -2.599 -4.279 3.044 -3.339 -3.764 0.154 -4.127 -1.823 1.886 -4.041 -0.263 -2.614 ML 55 53 6 58 6 1 10 68 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 10 68 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 6 66 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 11 69 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 11 69 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 66 G C - - MP 60 59 6 64 6 2 15 68 90 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.979 -3.208 -5.104 0.040 -5.566 -4.785 -0.872 -5.361 -4.479 3.690 -4.800 -0.917 -1.251 -4.622 -2.922 -3.977 ML 61 59 6 64 6 1 9 66 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 9 66 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 5 64 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 11 67 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 11 67 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 65 G C - - MP 66 65 6 70 6 2 15 66 88 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.071 -2.738 -4.080 1.027 -4.781 -4.544 -0.165 -4.472 -3.998 3.354 -4.377 0.258 -0.447 -3.987 -2.157 -2.985 ML 67 65 6 70 6 1 9 64 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 9 64 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 5 62 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 10 65 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 11 65 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 64 G C - - MP 72 71 6 76 6 2 14 64 86 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.067 -2.735 -4.076 0.983 -4.783 -4.545 -0.169 -4.469 -3.995 3.348 -4.375 0.381 -0.450 -3.986 -2.159 -2.981 ML 73 71 6 76 6 1 9 62 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 9 62 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 5 60 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 10 63 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 10 63 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 63 G C - - MP 78 77 6 82 6 2 13 62 84 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -3.779 -2.590 -3.775 1.533 -4.423 -4.437 0.120 -4.163 -3.803 3.141 -4.205 0.275 -0.161 -3.775 -1.851 -2.690 ML 79 77 6 82 6 1 8 60 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 8 60 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 5 58 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 10 61 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 10 61 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 62 G C - - MP 84 83 6 88 6 2 11 60 82 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.098 -2.752 -4.110 0.986 -4.813 -4.554 -0.192 -4.501 -4.015 3.369 -4.393 0.247 -0.475 -4.008 -2.186 -3.013 ML 85 83 6 88 6 1 8 58 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 7 58 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 4 56 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 9 59 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 9 59 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 61 g c - - MP 90 89 6 94 6 2 9 58 80 -9.158 -9.097 -0.077 -7.874 -8.153 -4.615 -3.084 -2.427 -3.124 1.944 -3.208 -3.922 1.388 -3.393 -3.236 2.325 -3.696 0.152 0.731 -3.197 -0.881 -2.113 ML 91 89 6 94 6 1 7 57 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 6 57 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 4 55 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 8 58 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 8 57 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 60 c g - - MP 96 95 6 100 4 2 7 56 78 -6.933 -7.140 -0.054 -5.554 -3.649 -3.590 -3.533 0.147 -2.481 -4.107 2.926 -3.190 -3.544 0.391 -3.936 -1.580 1.744 -3.789 0.365 -2.416 ML 97 95 6 100 4 1 6 56 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 5 55 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 4 54 76 -5.269 -4.950 -0.964 -1.221 IL 100 100 5 100 4 1 7 57 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 6 56 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - g - - - ML 102 101 6 104 3 1 6 54 76 -8.084 -0.019 -6.738 -0.071 -1.082 0.993 -0.774 D 103 101 6 104 3 0 3 52 74 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 55 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - u - - - ML 105 104 3 107 3 1 5 53 75 -8.467 -0.017 -6.784 -0.520 0.051 -0.970 0.812 D 106 104 3 107 3 0 3 51 73 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 5 53 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - A - - MR 108 107 3 110 3 1 4 52 74 -8.467 -0.017 -6.784 1.369 -1.695 -0.581 -1.184 D 109 107 3 110 3 0 2 50 72 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 4 52 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - u - - MR 111 110 3 113 2 1 3 51 73 -8.499 -0.004 -0.804 0.516 -1.595 0.737 D 112 110 3 113 2 0 2 50 72 -4.432 -0.068 IR 113 113 3 113 2 1 3 51 74 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 27 ] - - - - - - B 114 113 3 115 159 0 2 50 72 [ BEGL 28 ] - - - - - - S 115 114 1 116 4 0 0 33 55 -0.043 -6.900 -6.307 -6.947 [ MATP 29 ] 20 40 c g - - MP 116 115 1 120 6 2 2 33 55 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -3.814 -3.750 -3.676 0.024 -2.580 -4.239 2.814 -3.300 -3.683 0.255 -4.068 -1.711 2.230 -3.947 -0.245 -2.543 ML 117 115 1 120 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 1 120 6 1 1 31 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 1 120 6 0 0 29 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 32 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 39 C G - - MP 122 121 6 126 6 2 2 31 53 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.204 -4.149 -3.952 -0.352 -2.704 -4.409 3.322 -3.483 -3.979 -0.125 -4.294 -2.115 1.335 -4.281 -0.377 -2.816 ML 123 121 6 126 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 29 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 30 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 38 G C - - MP 128 127 6 132 6 2 2 29 51 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.004 -2.727 -4.015 1.468 -4.616 -4.554 -0.038 -4.363 -3.942 3.282 -4.337 -0.358 -0.344 -3.974 -2.030 -2.911 ML 129 127 6 132 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 23 37 G C - - MP 134 133 6 138 6 2 2 27 49 -9.158 -9.097 -0.124 -7.874 -8.153 -3.818 -4.012 -2.730 -4.023 1.456 -4.625 -4.556 -0.045 -4.371 -3.947 3.288 -4.341 -0.362 -0.351 -3.979 -2.038 -2.919 ML 135 133 6 138 6 1 1 25 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 25 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 24 36 c g - - MP 140 139 6 144 4 2 2 25 47 -2.058 -4.123 -0.558 -5.429 -3.625 -3.578 -3.481 0.111 -2.406 -4.018 2.957 -3.129 -3.505 0.362 -3.875 -1.610 1.215 -3.753 1.125 -2.386 ML 141 139 6 144 4 1 1 23 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 4 1 1 23 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 143 139 6 144 4 0 0 23 45 -5.651 -0.855 -3.348 -1.603 IL 144 144 5 144 4 1 1 25 47 -2.626 -0.787 -2.057 -5.795 0.000 0.000 0.000 0.000 IR 145 145 6 145 3 1 1 24 46 -1.208 -0.871 -5.621 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - u - - - ML 146 145 6 148 3 1 1 16 35 -8.084 -0.019 -6.738 -0.350 -0.161 -0.337 0.613 D 147 145 6 148 3 0 0 16 34 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - u - - - ML 149 148 3 151 3 1 1 15 33 -8.084 -0.019 -6.738 0.043 -0.446 -1.168 0.841 D 150 148 3 151 3 0 0 15 33 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - a - - - ML 152 151 3 154 3 1 1 13 31 -8.084 -0.019 -6.738 0.542 -0.254 -0.715 0.132 D 153 151 3 154 3 0 0 13 32 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - a - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 0.739 -1.164 0.171 -0.399 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 159 114 1 160 3 0 0 30 49 -8.084 -0.019 -6.738 IL 160 160 2 160 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 161 160 2 163 5 1 1 30 49 -7.198 -0.036 -7.014 -7.226 -8.117 0.093 -1.753 1.132 -1.167 D 162 160 2 163 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 42 57 G C - - MP 164 163 3 168 6 2 2 29 48 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -4.489 -2.971 -4.542 0.759 -5.151 -4.688 -0.489 -4.872 -4.235 3.542 -4.591 -0.635 -0.812 -4.308 -2.511 -3.426 ML 165 163 3 168 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 3 168 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 3 168 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 43 56 c g - - MP 170 169 6 174 6 2 2 27 46 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -3.668 -3.616 -3.577 0.137 -2.550 -4.182 2.797 -3.248 -3.579 0.355 -3.989 -1.595 2.035 -3.825 0.344 -2.453 ML 171 169 6 174 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 44 55 u a - - MP 176 175 6 180 6 2 2 25 44 -9.158 -9.097 -0.020 -7.874 -8.153 -8.548 -3.454 -3.431 -3.415 0.244 -2.504 -4.066 2.294 -3.167 -3.422 0.441 -3.860 -1.471 2.308 -3.642 1.120 -2.331 ML 177 175 6 180 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 45 54 c g - - MP 182 181 6 186 4 2 2 23 42 -7.076 -7.283 -0.049 -5.697 -3.604 -3.561 -3.530 0.171 -2.536 -4.150 2.762 -3.224 -3.531 0.379 -3.951 -1.557 1.908 -3.771 0.761 -2.416 ML 183 181 6 186 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - a - - - ML 188 187 6 190 3 1 1 20 39 -8.084 -0.019 -6.738 0.835 -0.396 -0.508 -0.411 D 189 187 6 190 3 0 0 20 38 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 191 190 3 193 3 1 1 19 38 -8.084 -0.019 -6.738 -1.834 -3.092 1.775 -2.480 D 192 190 3 193 3 0 0 18 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - G - - - ML 194 193 3 196 3 1 1 18 36 -8.084 -0.019 -6.738 -1.834 -3.092 1.775 -2.480 D 195 193 3 196 3 0 0 17 36 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - G - - - ML 197 196 3 199 3 1 1 17 35 -8.084 -0.019 -6.738 -1.834 -3.092 1.775 -2.480 D 198 196 3 199 3 0 0 16 35 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - U - - - ML 200 199 3 202 3 1 1 16 33 -8.084 -0.019 -6.738 -1.710 -1.667 -2.454 1.677 D 201 199 3 202 3 0 0 15 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - C - - - ML 203 202 3 205 3 1 1 14 31 -4.297 -0.090 -6.738 -1.367 1.410 -2.203 -0.439 D 204 202 3 205 3 0 0 12 29 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 16 33 -1.604 -0.689 -4.304 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - A - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 1.221 -0.942 -0.847 -0.755 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RT-13 ACC RF03017 DESC RT-13 RNA LENG 67 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 07:13:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03017/CM NSEQ 13 EFFN 4.275146 CKSUM 2896365265 STATS LOCAL MSV -7.7046 0.71906 STATS LOCAL VITERBI -9.1082 0.71906 STATS LOCAL FORWARD -3.2940 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.83618 1.28122 1.06128 1.52848 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 0.00000 * 1 3.42221 4.38058 0.06691 3.93428 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 2 2.73577 0.34393 3.36088 1.65300 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 3 3.42221 4.38058 0.06691 3.93428 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 4 3.32578 3.17511 3.86347 0.10395 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 5 3.42221 4.38058 0.06691 3.93428 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 6 3.72165 0.08616 4.25760 3.11891 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 7 3.08398 3.96793 0.08844 3.91441 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 8 3.92513 2.66213 3.76746 0.11952 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 9 2.80019 1.16402 2.57587 0.59623 9 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 10 3.06855 0.49595 2.84842 1.24973 10 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 11 3.07877 3.96007 0.08910 3.90378 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 12 2.04462 3.15767 0.25020 3.00778 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 13 2.09510 3.16717 0.24100 3.01643 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 14 1.57821 2.90860 0.39255 2.75241 14 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 15 2.08535 3.18399 0.24052 3.03459 15 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 16 1.19047 1.81498 0.89061 2.09823 16 g - - ( 1.38629 1.38629 1.38629 1.38629 0.15175 4.31626 2.06008 1.46634 0.26236 1.09861 0.40547 17 2.77614 0.58340 2.54706 1.19927 17 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03060 4.19511 4.19511 1.46634 0.26236 0.19021 1.75324 18 1.57842 2.29536 0.52523 2.28716 18 G - - , 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 19 1.98888 1.28326 2.18123 0.74841 19 u - - , 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 20 2.98437 0.68189 2.75359 0.96741 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 21 3.30237 0.31050 3.09979 1.68703 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 22 1.63784 3.13399 0.33987 2.99182 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 23 1.64815 3.13892 0.33643 2.99671 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.26236 4.31626 1.52594 1.46634 0.26236 1.09861 0.40547 24 2.89556 0.53406 2.68330 1.23728 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.39194 1.17933 4.08802 0.10574 2.29922 0.11583 2.21300 25 1.80292 1.46624 1.58575 0.91730 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 26 1.38040 1.75960 2.40114 0.72197 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 27 0.96148 1.54633 1.95994 1.33264 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 28 0.80579 2.44027 1.18963 1.82142 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.71712 0.69616 4.31626 0.41228 1.08513 1.09861 0.40547 29 2.07845 2.84463 0.29242 2.65543 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 30 3.22639 0.38118 2.95210 1.49159 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 31 3.21956 0.38531 2.94550 1.48186 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 32 1.86426 3.25313 0.27608 3.04522 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 33 1.06180 2.91278 0.62643 2.72804 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 34 1.37699 3.06243 0.45710 2.69159 41 G - - , 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 35 2.30966 3.57604 0.17276 3.46171 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 36 2.81288 0.69570 2.57795 1.00700 43 c - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 37 2.75435 1.14707 2.53498 0.61708 44 U - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 38 2.78284 0.72046 2.55402 0.98393 45 c - - < 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 39 0.71125 1.64676 1.79311 1.89811 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 40 3.42221 4.38058 0.06691 3.93428 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 41 3.42221 4.38058 0.06691 3.93428 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 42 3.42221 4.38058 0.06691 3.93428 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 43 3.32578 3.17511 3.86347 0.10395 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 44 2.95544 0.24963 3.56631 1.96189 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09160 2.60123 4.31626 0.32774 1.27492 1.09861 0.40547 45 0.41249 2.15653 2.13863 2.25897 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 46 1.34526 2.72540 0.51806 2.54676 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 47 0.97292 2.70589 0.74463 2.52197 55 g - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 48 1.23312 2.74926 0.56499 2.57335 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 49 3.67425 0.20039 3.40572 2.09525 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 50 2.32582 0.89601 2.91544 0.82116 58 u - - , 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 51 0.31851 3.03560 1.83116 2.74120 59 A - - , 1.38629 1.38629 1.38629 1.38629 0.15175 4.31626 2.06008 1.46634 0.26236 1.09861 0.40547 52 1.48554 2.71515 0.46438 2.53956 60 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03060 4.19511 4.19511 1.46634 0.26236 0.19021 1.75324 53 2.33889 1.05480 1.68668 0.99379 61 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 54 3.26501 0.33345 2.99956 1.63197 62 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 55 2.99754 0.49994 2.71816 1.28183 63 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 56 3.24907 0.34851 2.98217 1.58589 64 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 57 3.24183 0.34476 2.97289 1.60266 65 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 58 4.05960 0.10783 3.81632 2.76527 66 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 59 1.37261 3.01516 0.44899 2.82610 67 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 60 0.77296 2.74693 0.92270 2.56671 68 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 61 0.13550 3.97198 2.49706 3.66664 69 A - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 62 4.10271 0.10596 3.83789 2.77302 70 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 63 3.32578 3.17511 3.86347 0.10395 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 64 2.19376 0.57382 2.37622 1.46001 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 65 3.32578 3.17511 3.86347 0.10395 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 66 3.42221 4.38058 0.06691 3.93428 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.02706 4.31626 4.31626 1.46634 0.26236 1.09861 0.40547 67 3.72165 0.08616 4.25760 3.11891 75 C - - : 1.38629 1.38629 1.38629 1.38629 0.01362 4.30282 * 1.46634 0.26236 0.00000 * //