INFERNAL1/a [1.1.5 | Sep 2023] NAME Mu-gpT-DE ACC RF03012 DESC Mu-gpT-DE RNA STATES 163 NODES 46 CLEN 53 W 73 ALPH RNA RF no CONS yes MAP yes DATE Wed Aug 14 10:56:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03012/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 316 EFFN 8.057190 CKSUM 150689836 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 49.10 NC 35.90 EFP7GF -16.6622 0.71923 ECMLC 0.61768 -8.29105 1.82492 1600000 620634 0.001934 ECMGC 0.46512 -18.27805 -5.59045 1600000 146206 0.002736 ECMLI 0.65318 -6.46558 2.64234 1600000 460115 0.002608 ECMGI 0.48966 -14.54009 -3.17618 1600000 104389 0.003832 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 99 -8.402 -8.609 -0.019 -7.023 IL 1 1 2 1 4 1 18 76 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 76 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 17 73 99 -9.683 -0.007 -8.000 -1.560 1.387 -2.938 -0.128 D 4 2 3 5 3 0 12 72 97 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 16 74 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 67 - G - - MR 6 5 3 8 3 1 16 72 98 -9.683 -0.007 -8.000 -3.958 -5.450 1.954 -4.693 D 7 5 3 8 3 0 10 71 96 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 15 73 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 66 - U - - MR 9 8 3 11 3 1 16 71 97 -9.683 -0.007 -8.000 -3.939 -3.588 -4.735 1.931 D 10 8 3 11 3 0 9 70 95 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 72 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - A - - MR 12 11 3 14 3 1 15 70 96 -4.908 -0.061 -6.950 1.955 -4.910 -4.361 -4.624 D 13 11 3 14 3 0 8 68 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 14 71 96 -1.837 -0.557 -4.637 0.000 0.000 0.000 0.000 [ MATR 5 ] - 62 - C - - MR 15 14 3 17 3 1 14 69 95 -9.676 -0.007 -7.994 -0.363 1.211 -2.506 -0.453 D 16 14 3 17 3 0 7 68 93 -6.511 -1.356 -0.741 IR 17 17 3 17 3 1 12 70 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - A - - MR 18 17 3 20 3 1 13 68 94 -9.683 -0.007 -8.000 1.089 -1.020 -1.600 0.070 D 19 17 3 20 3 0 7 66 92 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 69 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 60 - a - - MR 21 20 3 23 3 1 13 67 93 -9.683 -0.007 -8.000 0.294 0.144 -0.352 -0.175 D 22 20 3 23 3 0 6 65 91 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 68 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 59 - u - - MR 24 23 3 26 3 1 12 66 92 -9.683 -0.007 -8.000 0.154 -0.190 -1.598 0.749 D 25 23 3 26 3 0 5 64 90 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 10 67 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 58 - U - - MR 27 26 3 29 3 1 11 65 91 -9.683 -0.010 -7.408 -0.319 -0.813 -1.776 1.225 D 28 26 3 29 3 0 5 63 89 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 9 66 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 57 - A - - MR 30 29 3 32 3 1 11 64 90 -9.680 -0.007 -7.997 1.722 -2.441 -2.498 -1.561 D 31 29 3 32 3 0 4 63 88 -6.449 -1.459 -0.678 IR 32 32 3 32 3 1 8 65 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 56 - G - - MR 33 32 3 35 3 1 10 63 89 -9.683 -0.007 -8.000 -3.958 -5.450 1.954 -4.693 D 34 32 3 35 3 0 3 62 87 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 8 64 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - A - - MR 36 35 3 38 5 1 9 62 88 -2.990 -0.207 -8.178 -8.390 -9.282 1.955 -4.910 -4.361 -4.624 D 37 35 3 38 5 0 3 61 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 7 62 87 -3.280 -0.250 -6.792 -4.959 -6.065 0.000 0.000 0.000 0.000 [ MATP 13 ] 2 53 C G - - MP 39 38 3 43 6 2 10 61 86 -9.842 -9.781 -0.013 -8.558 -8.838 -9.233 -6.600 -6.792 -5.909 -2.973 -4.290 -6.049 3.861 -5.277 -6.073 -2.906 -6.093 -5.021 -1.043 -6.479 -1.016 -4.871 ML 40 38 3 43 6 1 4 59 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 4 59 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 1 57 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 61 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 60 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 3 52 C G - - MP 45 44 6 49 6 2 9 59 84 -9.842 -9.781 -0.013 -8.558 -8.838 -9.233 -5.492 -5.470 -5.148 -1.503 -3.726 -5.544 3.513 -2.554 -5.156 -1.341 -5.444 -3.358 1.502 -5.514 -1.236 -3.942 ML 46 44 6 49 6 1 4 58 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 57 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 55 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 59 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 58 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 4 51 U A - - MP 51 50 6 55 6 2 7 57 82 -9.842 -9.781 -0.013 -8.558 -8.838 -9.233 -7.886 -7.767 -7.354 -4.048 -5.837 -7.624 -1.573 -6.693 -7.297 -4.093 -7.586 -5.701 3.939 -7.761 -3.347 -5.079 ML 52 50 6 55 6 1 4 56 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 56 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 57 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 56 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 5 50 G C - - MP 57 56 6 61 4 2 5 55 80 -8.402 -8.609 -0.019 -7.023 -6.686 -4.211 -7.191 -0.404 -8.055 -5.632 -2.901 -7.434 -5.573 3.863 -5.834 -2.001 -3.203 -5.821 -5.083 -6.034 ML 58 56 6 61 4 1 3 55 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 54 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 53 78 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 4 56 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 55 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 6 - A - - - ML 63 62 6 65 3 1 3 53 78 -9.683 -0.007 -8.000 1.955 -4.910 -4.361 -4.624 D 64 62 6 65 3 0 0 52 77 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 3 54 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 49 - A - - MR 66 65 3 68 3 1 2 52 77 -9.683 -0.007 -8.000 1.955 -4.910 -4.361 -4.624 D 67 65 3 68 3 0 0 50 76 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 2 53 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 48 - G - - MR 69 68 3 71 3 1 1 51 76 -9.683 -0.133 -3.525 -3.958 -5.450 1.954 -4.693 D 70 68 3 71 3 0 0 49 75 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 52 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 47 - c - - MR 72 71 3 74 3 1 2 50 75 -9.558 -0.011 -7.300 0.643 0.810 -2.227 -1.085 D 73 71 3 74 3 0 0 49 74 -7.842 -0.435 -1.966 IR 74 74 3 74 3 1 1 51 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 46 - A - - MR 75 74 3 77 3 1 2 49 74 -9.676 -0.007 -7.994 1.724 -2.468 -2.260 -1.701 D 76 74 3 77 3 0 0 47 73 -6.514 -1.352 -0.744 IR 77 77 3 77 3 1 1 50 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 45 - C - - MR 78 77 3 80 3 1 2 48 73 -9.683 -0.007 -8.000 -4.528 1.943 -5.127 -3.602 D 79 77 3 80 3 0 0 46 72 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 49 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 44 - C - - MR 81 80 3 83 3 1 2 47 72 -9.683 -0.007 -8.000 -4.528 1.943 -5.127 -3.602 D 82 80 3 83 3 0 0 45 71 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 48 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 43 - G - - MR 84 83 3 86 3 1 1 46 71 -6.851 -0.113 -3.911 -1.952 -0.615 1.533 -2.363 D 85 83 3 86 3 0 0 44 70 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 47 72 -2.011 -0.516 -4.249 0.000 0.000 0.000 0.000 [ MATR 25 ] - 41 - A - - MR 87 86 3 89 3 1 1 45 70 -9.589 -0.008 -7.907 1.324 -1.628 -1.710 -0.206 D 88 86 3 89 3 0 0 44 69 -7.597 -0.573 -1.632 IR 89 89 3 89 3 1 1 46 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 40 - U - - MR 90 89 3 92 3 1 1 44 69 -9.676 -0.007 -7.994 -0.273 -1.642 -2.016 1.381 D 91 89 3 92 3 0 0 42 68 -6.520 -1.342 -0.750 IR 92 92 3 92 3 1 1 45 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 39 - c - - MR 93 92 3 95 3 1 1 43 68 -9.683 -0.007 -8.000 -0.666 0.666 -1.955 0.609 D 94 92 3 95 3 0 0 41 67 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 44 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 38 - A - - MR 96 95 3 98 3 1 1 42 67 -9.683 -0.007 -8.000 1.384 -1.756 -1.906 -0.273 D 97 95 3 98 3 0 0 40 66 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 43 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 37 - C - - MR 99 98 3 101 3 1 1 41 66 -9.683 -0.007 -8.000 -4.528 1.943 -5.127 -3.602 D 100 98 3 101 3 0 0 39 65 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 42 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 36 - A - - MR 102 101 3 104 5 1 1 40 65 -8.363 -0.016 -8.178 -8.390 -9.282 1.955 -4.910 -4.361 -4.624 D 103 101 3 104 5 0 0 39 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 40 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 7 35 C G - - MP 105 104 3 109 6 2 2 39 64 -9.842 -9.781 -0.013 -8.558 -8.838 -9.233 -7.473 -7.620 -6.577 -3.846 -4.942 -6.609 3.939 -6.158 -6.950 -3.815 -6.644 -5.811 -1.953 -7.373 -2.961 -5.753 ML 106 104 3 109 6 1 1 38 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 37 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 35 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 39 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 38 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 8 34 A U - - MP 111 110 6 115 6 2 2 37 62 -9.842 -9.781 -0.013 -8.558 -8.838 -9.233 -5.100 -3.941 -5.185 3.594 -5.711 -6.982 -1.294 -5.162 -4.908 0.224 -5.491 -1.308 0.606 -6.017 -3.263 -3.882 ML 112 110 6 115 6 1 1 36 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 35 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 33 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 37 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 36 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 9 33 G C - - MP 117 116 6 121 6 2 2 35 60 -9.842 -9.781 -0.013 -8.558 -8.838 -9.233 -4.869 -3.184 -4.762 1.170 -5.829 -4.611 -0.883 -5.412 -4.850 3.516 -5.094 -0.456 -1.155 -4.193 -2.912 -3.724 ML 118 116 6 121 6 1 1 34 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 31 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 35 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 10 32 c g - - MP 123 122 6 127 6 2 2 33 58 -9.842 -9.781 -0.045 -8.558 -8.838 -5.418 -2.224 -2.233 -2.310 1.136 -1.872 -3.259 1.938 -1.949 -2.459 0.923 -2.883 -0.366 1.778 -2.552 0.816 -1.496 ML 124 122 6 127 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 33 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 32 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 11 31 c g - - MP 129 128 6 133 4 2 2 31 56 -8.352 -8.559 -0.063 -4.744 -2.755 -2.875 -2.751 0.458 -2.753 -4.087 2.653 -3.257 -3.234 0.732 -3.472 -0.770 1.790 -3.393 0.468 -2.239 ML 130 128 6 133 4 1 1 31 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 30 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 29 54 -5.221 -4.902 -2.918 -0.309 IL 133 133 5 133 4 1 1 32 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 31 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 12 - G - - - ML 135 134 6 137 3 1 1 29 54 -9.260 -0.035 -5.466 0.050 -1.355 1.000 -0.803 D 136 134 6 137 3 0 0 26 51 -7.484 -2.514 -0.287 IL 137 137 3 137 3 1 1 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 13 - C - - - ML 138 137 3 140 3 1 1 28 53 -3.592 -0.132 -7.896 -1.859 1.527 -1.657 -0.929 D 139 137 3 140 3 0 0 25 49 -7.647 -0.412 -2.039 IL 140 140 3 140 3 1 1 30 56 -1.056 -1.023 -5.212 0.000 0.000 0.000 0.000 [ MATL 38 ] 18 - A - - - ML 141 140 3 143 3 1 1 25 48 -9.352 -0.008 -8.006 1.620 -2.068 -1.312 -1.810 D 142 140 3 143 3 0 0 23 46 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 19 - U - - - ML 144 143 3 146 3 1 1 24 47 -9.352 -0.008 -8.006 -0.817 -0.796 -1.998 1.382 D 145 143 3 146 3 0 0 22 46 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 20 - u - - - ML 147 146 3 149 3 1 1 23 46 -9.352 -0.008 -8.006 0.022 -0.588 0.093 0.325 D 148 146 3 149 3 0 0 22 45 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 24 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 21 - g - - - ML 150 149 3 152 3 1 1 22 45 -9.352 -0.117 -3.716 0.036 -0.441 0.619 -0.509 D 151 149 3 152 3 0 0 21 45 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 22 - u - - - ML 153 152 3 155 3 1 1 21 44 -3.565 -0.203 -4.423 -0.492 -0.333 -0.646 0.892 D 154 152 3 155 3 0 0 21 45 -1.614 -1.849 -1.337 IL 155 155 3 155 3 1 1 23 46 -1.140 -1.093 -3.689 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - G - - - ML 156 155 3 158 3 1 1 12 31 -9.235 -0.049 -4.976 -1.350 -1.622 1.577 -1.738 D 157 155 3 158 3 0 0 12 31 -7.702 -1.782 -0.506 IL 158 158 3 158 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - u - - - ML 159 158 3 161 2 1 1 1 1 * 0.000 -0.773 0.567 -1.400 0.637 D 160 158 3 161 2 0 0 0 0 * 0.000 IL 161 161 3 161 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 162 161 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Mu-gpT-DE ACC RF03012 DESC Mu-gpT-DE RNA LENG 53 MAXL 117 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Aug 14 10:56:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03012/CM NSEQ 316 EFFN 12.396790 CKSUM 150689836 STATS LOCAL MSV -7.5770 0.71923 STATS LOCAL VITERBI -8.0534 0.71923 STATS LOCAL FORWARD -3.8899 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22405 1.34259 1.41772 1.59687 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 0.00000 * 1 2.65010 0.37786 3.78031 1.50862 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 2 4.79048 0.07405 4.71775 2.91630 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 3 4.13832 0.25806 3.96073 1.64793 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 4 5.63351 4.50042 5.68112 0.01826 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 5 3.06053 4.93346 0.06367 4.87676 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 6 0.01851 5.32188 4.92084 5.08938 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 7 5.49358 0.02312 5.46937 4.23188 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 8 0.21199 4.20341 2.58532 2.29550 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 9 1.89069 3.48309 0.24448 3.34639 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 10 1.75284 1.27891 1.71650 0.99782 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.04884 5.15757 3.17223 1.46634 0.26236 1.09861 0.40547 11 2.32932 0.81793 1.98206 1.12853 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.04362 5.12074 3.30466 1.46634 0.26236 2.22802 0.11400 12 1.37158 2.44818 0.62397 2.08721 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03282 5.08952 3.64490 1.46634 0.26236 1.99894 0.14558 13 2.98826 0.27131 2.56354 2.20536 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10584 2.36252 5.07534 0.90895 0.51575 0.12744 2.12314 14 0.22188 3.00200 2.36918 2.88703 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 15 2.05168 1.99907 2.99248 0.37709 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 16 1.40422 1.82549 1.27946 1.15482 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 17 1.38823 1.68038 0.89600 1.85802 21 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05116 5.15757 3.12083 1.46634 0.26236 1.09861 0.40547 18 1.83086 1.62546 1.83695 0.72650 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.17097 2.23350 2.99570 0.70343 0.68297 0.76705 0.62434 19 2.50949 2.54056 0.25185 2.77249 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04938 5.09504 3.16872 1.46634 0.26236 1.82859 0.17512 20 2.07501 0.93183 2.47137 0.92597 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01270 5.06588 5.06588 1.46634 0.26236 0.60603 0.78858 21 1.43059 2.22805 0.63512 2.09375 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01202 5.12074 5.12074 1.46634 0.26236 0.24269 1.53488 22 1.35291 1.96002 0.97217 1.50328 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 23 3.62238 0.28876 3.32363 1.67094 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 24 2.32808 2.83375 4.00707 0.19172 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 25 4.49859 5.65581 0.01927 5.41087 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 26 0.01851 5.32188 4.92084 5.08938 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 27 4.96750 0.02520 5.31864 4.34069 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 28 0.36985 2.85847 2.98811 1.60235 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 29 1.95435 0.86533 2.99523 0.94828 39 c - - - 1.38629 1.38629 1.38629 1.38629 0.01662 5.15757 4.53483 1.46634 0.26236 1.09861 0.40547 30 1.59763 2.79007 3.05500 0.37239 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.07902 5.15258 2.65650 1.46634 0.26236 1.35171 0.29948 31 0.40733 2.75428 2.81235 1.55658 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.02142 4.19879 5.08601 0.68613 0.70021 0.14311 2.01482 32 3.18886 1.74266 0.28248 3.51281 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 33 4.96750 0.02520 5.31864 4.34069 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 34 4.96750 0.02520 5.31864 4.34069 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.01637 5.15757 4.55823 1.46634 0.26236 1.09861 0.40547 35 0.15976 3.32353 3.15397 2.67449 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.10644 5.15283 2.35192 1.46634 0.26236 1.02770 0.44290 36 0.89889 0.74788 3.35876 2.46711 47 c - - - 1.38629 1.38629 1.38629 1.38629 0.01275 5.06151 5.06151 1.46634 0.26236 0.11177 2.24672 37 4.56054 5.65915 0.02044 5.06937 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 38 0.01851 5.32188 4.92084 5.08938 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 39 4.94272 0.07313 4.80996 2.89608 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 40 0.02250 5.83100 4.26618 5.24494 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 41 1.73653 4.10654 0.25120 3.52207 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 42 3.61106 4.80874 0.04708 4.52761 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.16360 1.92988 5.15757 0.07749 2.59605 1.09861 0.40547 43 0.01851 5.32188 4.92084 5.08938 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 44 4.56054 5.65915 0.02044 5.06937 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.01380 5.15757 4.83517 1.46634 0.26236 1.09861 0.40547 45 0.16107 3.30294 3.38417 2.54996 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.01160 5.15538 5.15538 1.46634 0.26236 0.89561 0.52486 46 1.64347 2.02346 2.82003 0.48631 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 47 1.27708 1.51589 2.69626 0.83453 59 u - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 48 1.18063 1.23610 1.62297 1.58432 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 49 0.57555 2.19405 2.70812 1.34909 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.01626 5.15757 4.56840 1.46634 0.26236 1.09861 0.40547 50 1.66589 0.48195 3.50677 1.81154 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04831 3.18505 5.15294 0.54818 0.86275 0.74649 0.64251 51 0.01851 5.32188 4.92084 5.08938 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 52 4.66602 4.37667 5.23111 0.02770 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.01158 5.15757 5.15757 1.46634 0.26236 1.09861 0.40547 53 4.56054 5.65915 0.02044 5.06937 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.00581 5.15179 * 1.46634 0.26236 0.00000 * //