INFERNAL1/a [1.1.5 | Sep 2023] NAME leuA-Halobacteria ACC RF03001 DESC leuA-Halobacteria RNA STATES 163 NODES 48 CLEN 53 W 67 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 10:12:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03001/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 152 EFFN 6.331787 CKSUM 3855520296 NULL 0.000 0.000 0.000 0.000 GA 47.90 TC 47.90 NC 33.90 EFP7GF -14.6922 0.71922 ECMLC 0.58965 -9.70721 0.60227 1600000 523896 0.002291 ECMGC 0.42622 -20.87634 -6.99052 1600000 148726 0.002690 ECMLI 0.56164 -8.58303 1.22843 1600000 296745 0.004044 ECMGI 0.44157 -17.59473 -4.79004 1600000 114187 0.003503 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 67 86 -8.118 -8.325 -0.023 -6.739 IL 1 1 2 1 4 1 14 72 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 14 67 86 -9.076 -0.010 -7.730 -0.073 0.140 -0.240 0.138 D 4 2 3 5 3 0 7 66 85 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 13 66 85 -9.076 -0.010 -7.730 -0.246 0.268 -0.121 0.047 D 7 5 3 8 3 0 6 65 84 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 13 65 84 -9.076 -0.010 -7.730 -0.219 0.813 -0.459 -0.607 D 10 8 3 11 3 0 5 64 83 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 12 64 83 -9.076 -0.010 -7.730 -0.608 -0.019 0.247 0.226 D 13 11 3 14 3 0 4 63 82 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 1 11 63 82 -9.076 -0.010 -7.730 0.294 -0.708 -0.133 0.321 D 16 14 3 17 3 0 3 62 81 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 10 62 81 -9.076 -0.010 -7.730 -0.274 1.090 -1.261 -0.672 D 19 17 3 20 3 0 2 61 80 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 1 9 61 80 -9.076 -0.010 -7.730 -0.628 0.171 0.683 -0.686 D 22 20 3 23 3 0 1 60 79 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 9 60 79 -9.076 -0.010 -7.730 -3.585 -5.032 1.940 -4.325 D 25 23 3 26 3 0 1 59 78 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 8 59 78 -9.076 -0.010 -7.730 1.872 -3.710 -2.537 -3.474 D 28 26 3 29 3 0 0 58 77 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 7 58 76 -9.076 -0.010 -7.730 -3.585 -5.032 1.940 -4.325 D 31 29 3 32 3 0 0 57 76 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 6 57 75 -9.076 -0.010 -7.730 -3.585 -5.032 1.940 -4.325 D 34 32 3 35 3 0 0 56 75 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 6 55 74 -9.076 -0.010 -7.730 1.939 -4.472 -3.940 -4.189 D 37 35 3 38 3 0 0 55 73 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 5 54 73 -9.076 -0.010 -7.730 -3.509 -3.200 -4.297 1.908 D 40 38 3 41 3 0 0 53 72 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 2 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 4 53 72 -9.076 -0.010 -7.730 1.939 -4.472 -3.940 -4.189 D 43 41 3 44 3 0 0 52 71 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 2 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 4 52 71 -9.076 -0.010 -7.730 -2.392 -2.408 1.805 -2.971 D 46 44 3 47 3 0 0 51 70 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 3 51 70 -9.076 -0.010 -7.730 1.724 -1.922 -2.109 -2.317 D 49 47 3 50 3 0 0 50 69 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 3 50 69 -9.076 -0.010 -7.730 -1.767 -1.745 1.687 -2.417 D 52 50 3 53 3 0 0 49 68 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 2 49 68 -9.076 -0.010 -7.730 -1.300 -1.788 1.351 -0.409 D 55 53 3 56 3 0 0 48 67 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 2 48 66 -9.415 -0.009 -7.732 1.939 -4.472 -3.940 -4.189 D 58 56 3 59 3 0 0 47 65 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 53 - C - - MR 60 59 3 62 3 1 1 47 65 -9.415 -0.009 -7.732 -1.920 1.512 -1.547 -0.885 D 61 59 3 62 3 0 0 45 64 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 52 - c - - MR 63 62 3 65 3 1 1 46 64 -9.415 -0.009 -7.732 0.079 0.722 -0.911 -0.392 D 64 62 3 65 3 0 0 44 63 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 51 - u - - MR 66 65 3 68 3 1 1 45 63 -9.415 -0.009 -7.732 -0.337 -0.430 0.099 0.480 D 67 65 3 68 3 0 0 43 62 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 50 - C - - MR 69 68 3 71 3 1 1 44 62 -9.415 -0.009 -7.732 -1.643 1.516 -1.486 -1.111 D 70 68 3 71 3 0 0 42 61 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 49 - U - - MR 72 71 3 74 3 1 1 43 61 -9.415 -0.009 -7.732 -2.411 -1.093 -3.164 1.692 D 73 71 3 74 3 0 0 41 60 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 48 - U - - MR 75 74 3 77 3 1 1 42 60 -9.415 -0.009 -7.732 -2.100 -2.423 -3.268 1.798 D 76 74 3 77 3 0 0 40 59 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 47 - A - - MR 78 77 3 80 3 1 1 41 59 -9.415 -0.009 -7.732 1.939 -4.472 -3.940 -4.189 D 79 77 3 80 3 0 0 39 58 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 46 - A - - MR 81 80 3 83 3 1 1 40 58 -9.415 -0.009 -7.732 1.939 -4.472 -3.940 -4.189 D 82 80 3 83 3 0 0 38 57 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 45 - A - - MR 84 83 3 86 3 1 1 39 57 -9.415 -0.009 -7.732 1.939 -4.472 -3.940 -4.189 D 85 83 3 86 3 0 0 37 56 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 44 - G - - MR 87 86 3 89 3 1 1 38 56 -9.415 -0.009 -7.732 -3.585 -5.032 1.940 -4.325 D 88 86 3 89 3 0 0 36 55 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 43 - u - - MR 90 89 3 92 3 1 1 37 55 -9.415 -0.009 -7.732 -0.030 0.214 -1.329 0.549 D 91 89 3 92 3 0 0 35 54 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 42 - G - - MR 93 92 3 95 3 1 1 36 54 -9.415 -0.009 -7.732 -3.585 -5.032 1.940 -4.325 D 94 92 3 95 3 0 0 34 53 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 41 - C - - MR 96 95 3 98 3 1 1 35 53 -9.415 -0.009 -7.732 -2.641 1.652 -3.557 -0.708 D 97 95 3 98 3 0 0 33 52 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 40 - c - - MR 99 98 3 101 3 1 1 34 52 -9.415 -0.009 -7.732 -0.284 0.491 -0.438 0.050 D 100 98 3 101 3 0 0 32 51 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 39 - G - - MR 102 101 3 104 3 1 1 33 51 -9.415 -0.009 -7.732 -2.208 -4.230 1.868 -3.654 D 103 101 3 104 3 0 0 31 50 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 38 - G - - MR 105 104 3 107 5 1 1 32 50 -8.103 -0.019 -7.918 -8.130 -9.022 -3.585 -5.032 1.940 -4.325 D 106 104 3 107 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 20 37 A U - - MP 108 107 3 112 6 2 2 31 49 -9.670 -9.609 -0.014 -8.386 -8.666 -9.061 -5.864 -4.590 -5.409 3.885 -7.113 -8.437 -2.723 -5.330 -5.621 -1.188 -6.244 -1.869 -3.071 -7.152 -4.631 -4.384 ML 109 107 3 112 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 21 36 G C - - MP 114 113 6 118 6 2 2 29 47 -9.670 -9.609 -0.014 -8.386 -8.666 -9.061 -6.765 -4.111 -7.432 -1.276 -7.958 -5.451 -2.824 -7.566 -5.463 3.894 -5.706 -1.939 -3.185 -5.724 -5.034 -6.283 ML 115 113 6 118 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 22 35 U G - - MP 120 119 6 124 6 2 2 27 45 -9.670 -9.609 -0.014 -8.386 -8.666 -9.061 -5.865 -6.080 -5.239 -2.296 -3.628 -5.419 1.335 -4.529 -5.330 -2.242 -5.474 -4.363 0.390 -5.736 3.508 -4.134 ML 121 119 6 124 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 23 34 C G - - MP 126 125 6 130 6 2 2 25 43 -9.670 -9.609 -0.014 -8.386 -8.666 -9.061 -6.951 -7.060 -6.179 -3.259 -4.572 -6.277 3.912 -5.676 -6.446 -3.210 -6.299 -5.185 -1.448 -6.867 -2.482 -5.249 ML 127 125 6 130 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 24 33 G C - - MP 132 131 6 136 6 2 2 23 41 -9.670 -9.609 -0.014 -8.386 -8.666 -9.061 -6.765 -4.111 -7.432 -1.276 -7.958 -5.451 -2.824 -7.566 -5.463 3.894 -5.706 -1.939 -3.185 -5.724 -5.034 -6.283 ML 133 131 6 136 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 25 32 c g - - MP 138 137 6 142 6 2 2 21 39 -9.670 -9.609 -0.014 -8.386 -8.666 -9.061 -4.072 -3.782 -4.053 0.081 -3.193 -4.786 2.677 -3.800 -4.036 2.082 -4.500 -1.563 1.193 -4.218 -0.028 -2.846 ML 139 137 6 142 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 26 31 c g - - MP 144 143 6 148 4 2 2 19 37 -8.118 -8.325 -0.023 -6.739 -2.729 -2.635 -2.860 0.915 -2.692 -2.036 2.343 -3.082 -1.888 2.068 -3.459 -0.828 0.897 -2.972 -0.485 -1.971 ML 145 143 6 148 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 27 - G - - - ML 150 149 6 152 3 1 1 15 34 -9.076 -0.010 -7.730 -0.504 -1.457 1.030 -0.169 D 151 149 6 152 3 0 0 16 34 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 28 - C - - - ML 153 152 3 155 3 1 1 14 32 -9.076 -0.010 -7.730 -1.924 1.666 -2.685 -1.297 D 154 152 3 155 3 0 0 15 33 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 29 - g - - - ML 156 155 3 158 3 1 1 12 31 -9.076 -0.010 -7.730 0.765 -1.944 0.797 -1.724 D 157 155 3 158 3 0 0 13 32 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 30 - A - - - ML 159 158 3 161 2 1 1 1 1 * 0.000 1.287 -0.212 -1.867 -1.244 D 160 158 3 161 2 0 0 0 0 * 0.000 IL 161 161 3 161 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 162 161 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME leuA-Halobacteria ACC RF03001 DESC leuA-Halobacteria RNA LENG 53 MAXL 122 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 10:12:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03001/CM NSEQ 152 EFFN 8.113037 CKSUM 3855520296 STATS LOCAL MSV -7.1399 0.71922 STATS LOCAL VITERBI -8.0264 0.71922 STATS LOCAL FORWARD -4.0805 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37304 1.47739 1.07238 1.73592 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 0.00000 * 1 1.46374 1.26124 1.53939 1.30632 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 2 1.60084 1.16553 1.45047 1.37811 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 3 1.57732 0.76958 1.70121 1.91188 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 4 1.90331 1.37515 1.17746 1.23766 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 5 1.18056 1.90932 1.46442 1.15996 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 6 1.60956 0.57865 2.31460 1.96208 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 7 1.92303 1.23020 0.86016 1.97681 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 8 4.13690 5.17207 0.03174 4.64619 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 9 0.07298 4.20770 3.26022 4.06738 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 10 4.13690 5.17207 0.03174 4.64619 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 11 4.13690 5.17207 0.03174 4.64619 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 12 0.03083 4.79806 4.41771 4.59992 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 13 4.12540 3.88085 4.67705 0.04719 13 U - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 14 0.03083 4.79806 4.41771 4.59992 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 15 3.28770 3.09289 0.11383 3.69367 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 16 0.16750 2.77385 2.97148 3.20462 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 17 2.77998 2.60512 0.19104 3.27094 17 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 18 2.46206 2.74738 0.40657 1.68893 18 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 19 0.03083 4.79806 4.41771 4.59992 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 20 0.05541 4.72586 3.36824 4.54823 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 21 3.64941 4.68548 0.04565 4.66822 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 22 4.23388 1.89665 4.14025 0.19904 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 23 4.88699 0.04330 4.83989 3.61462 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 24 3.63987 4.66903 0.04630 4.64546 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 25 2.70331 0.84509 1.20999 1.58329 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 26 1.98889 0.99997 1.11754 1.78272 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 27 1.80759 2.50391 0.62286 1.52429 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 28 2.85998 0.19937 3.36477 2.42010 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 29 0.83527 2.88220 0.79554 2.83203 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 30 0.45407 1.51114 2.86003 2.44141 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 31 1.96076 1.18678 0.94174 1.80730 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 32 1.91458 1.26087 0.72606 2.46068 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 33 4.73023 0.05728 4.56001 3.31373 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 34 3.88289 4.99405 0.03694 4.72204 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 35 2.50778 4.27897 0.12076 3.99284 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 36 4.77988 0.05619 4.58754 3.32239 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 37 4.80891 3.79968 4.55659 0.04190 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 38 4.13690 5.17207 0.03174 4.64619 38 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 39 3.02139 4.57562 0.07750 4.16447 39 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 40 1.62853 1.00461 1.68520 1.37759 40 c - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 41 3.47606 0.21391 4.11042 1.92930 41 C - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 42 4.13690 5.17207 0.03174 4.64619 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 43 1.41984 1.21354 2.38261 0.99751 43 u - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 44 4.13690 5.17207 0.03174 4.64619 44 G - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 45 0.03083 4.79806 4.41771 4.59992 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 46 0.03083 4.79806 4.41771 4.59992 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 47 0.03083 4.79806 4.41771 4.59992 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 48 2.96610 3.25888 3.86143 0.11763 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 49 3.30327 2.18442 3.82329 0.18773 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 50 2.70331 0.29168 2.44420 2.31050 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 51 1.67369 1.69234 1.28765 1.04287 51 u - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 52 1.34267 0.83715 2.04914 1.73123 52 c - - : 1.38629 1.38629 1.38629 1.38629 0.01729 4.75940 4.75940 1.46634 0.26236 1.09861 0.40547 53 2.95847 0.29519 2.48757 2.11527 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.00868 4.75079 * 1.46634 0.26236 0.00000 * //