INFERNAL1/a [1.1.5 | Sep 2023] NAME ilvH ACC RF02993 DESC ilvH RNA STATES 208 NODES 53 CLEN 68 W 84 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 22:48:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02993/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 2.004639 CKSUM 1991501820 NULL 0.000 0.000 0.000 0.000 GA 55.10 TC 55.10 NC 53.50 EFP7GF -10.1224 0.71902 ECMLC 0.59605 -7.31912 2.85943 1600000 517648 0.002318 ECMGC 0.44645 -17.29860 -4.22858 1600000 136837 0.002923 ECMLI 0.61523 -4.78981 4.25195 1600000 312656 0.003838 ECMGI 0.48893 -11.97281 -1.01706 1600000 84797 0.004717 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 103 -6.978 -7.185 -0.052 -5.600 IL 1 1 2 1 4 1 19 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 18 84 103 -7.993 -0.020 -6.647 -1.641 -2.871 1.737 -2.258 D 4 2 3 5 3 0 13 82 102 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 18 83 102 -7.993 -0.020 -6.647 1.363 -1.628 -0.637 -1.113 D 7 5 3 8 3 0 13 81 101 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 17 82 101 -7.993 -0.020 -6.647 -0.905 1.378 -1.951 -0.716 D 10 8 3 11 3 0 12 80 100 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 16 80 100 -7.993 -0.020 -6.647 -1.641 -2.871 1.737 -2.258 D 13 11 3 14 3 0 11 79 99 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 15 79 99 -7.993 -0.020 -6.647 1.731 -2.429 -2.055 -1.977 D 16 14 3 17 3 0 10 78 98 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 15 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 14 78 98 -7.993 -0.020 -6.647 1.731 -2.429 -2.055 -1.977 D 19 17 3 20 3 0 9 77 97 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 14 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 13 77 97 -7.993 -0.020 -6.647 -1.538 -1.526 -2.275 1.633 D 22 20 3 23 3 0 8 76 96 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 12 76 96 -7.993 -0.020 -6.647 -1.810 1.642 -2.636 -1.210 D 25 23 3 26 3 0 7 75 94 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 12 75 95 -7.993 -0.020 -6.647 -1.046 -0.719 -1.781 1.388 D 28 26 3 29 3 0 7 74 93 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 11 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 11 74 93 -8.381 -0.018 -6.699 1.731 -2.429 -2.055 -1.977 D 31 29 3 32 3 0 6 73 92 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 68 - u - - MR 33 32 3 35 3 1 10 73 92 -8.381 -0.018 -6.699 -0.238 -0.834 -0.484 0.908 D 34 32 3 35 3 0 4 71 91 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 67 - C - - MR 36 35 3 38 3 1 9 72 91 -8.381 -0.018 -6.699 -1.144 1.291 -1.968 -0.243 D 37 35 3 38 3 0 3 70 90 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 8 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 66 - u - - MR 39 38 3 41 3 1 8 71 90 -8.381 -0.018 -6.699 -0.371 -0.559 -0.316 0.803 D 40 38 3 41 3 0 2 69 89 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 7 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 65 - A - - MR 42 41 3 44 3 1 8 70 89 -8.381 -0.018 -6.699 1.468 -1.763 -0.932 -1.269 D 43 41 3 44 3 0 2 68 88 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 6 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 64 - A - - MR 45 44 3 47 3 1 7 69 88 -8.381 -0.018 -6.699 1.341 -0.938 -1.327 -0.871 D 46 44 3 47 3 0 1 67 87 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 5 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 63 - G - - MR 48 47 3 50 3 1 6 68 87 -8.381 -0.018 -6.699 -0.192 -1.834 1.276 -1.243 D 49 47 3 50 3 0 1 66 86 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 62 - G - - MR 51 50 3 53 3 1 5 67 86 -8.381 -0.018 -6.699 -1.641 -2.871 1.737 -2.258 D 52 50 3 53 3 0 0 65 85 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 4 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 61 - A - - MR 54 53 3 56 3 1 4 66 85 -8.381 -0.018 -6.699 1.229 -0.681 -1.241 -0.716 D 55 53 3 56 3 0 0 64 84 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 3 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 60 - G - - MR 57 56 3 59 3 1 4 65 84 -8.381 -0.018 -6.699 -0.459 -2.012 1.407 -1.421 D 58 56 3 59 3 0 0 63 83 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 3 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 59 - A - - MR 60 59 3 62 3 1 3 64 83 -8.381 -0.018 -6.699 1.731 -2.429 -2.055 -1.977 D 61 59 3 62 3 0 0 62 82 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 2 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 58 - A - - MR 63 62 3 65 3 1 2 63 82 -8.381 -0.056 -4.821 1.731 -2.429 -2.055 -1.977 D 64 62 3 65 3 0 0 62 81 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 2 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 57 - A - - MR 66 65 3 68 5 1 3 62 81 -7.083 -0.039 -6.898 -7.111 -8.002 1.427 -1.681 -0.842 -1.177 D 67 65 3 68 5 0 0 61 80 -5.519 -0.611 -3.145 -4.576 -2.571 IR 68 68 3 68 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 11 56 U A - - MP 69 68 3 73 6 2 4 61 80 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.260 -4.087 -4.091 -0.377 -3.018 -4.649 1.312 -3.719 -4.095 -0.134 -4.465 -1.984 3.361 -4.409 -0.692 -2.912 ML 70 68 3 73 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 12 55 U G - - MP 75 74 6 79 6 2 3 59 78 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.152 -4.075 -3.840 -0.403 -2.579 -4.255 1.710 -3.357 -3.881 -0.221 -4.166 -2.074 0.852 -4.231 3.043 -2.749 ML 76 74 6 79 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 13 54 G C - - MP 81 80 6 85 4 2 2 57 76 -6.978 -7.185 -0.052 -5.600 -4.801 -3.122 -4.906 0.160 -5.316 -4.717 -0.666 -5.153 -4.367 3.652 -4.699 -0.824 -1.050 -4.507 -2.707 -3.782 ML 82 80 6 85 4 1 1 58 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 14 - u - - - ML 87 86 6 89 5 1 1 55 74 -7.118 -0.038 -6.934 -7.146 -8.037 -0.133 0.121 -0.777 0.503 D 88 86 6 89 5 0 0 53 72 -4.959 -0.803 -4.221 -2.596 -2.508 IL 89 89 3 89 5 1 1 55 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 53 C G - - MP 90 89 3 94 6 2 2 54 73 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -2.876 -2.961 -2.978 0.331 -1.703 -1.532 3.061 -3.059 -3.022 0.425 -3.523 -1.298 1.130 -3.154 -0.445 -2.084 ML 91 89 3 94 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 52 u a - - MP 96 95 6 100 6 2 2 52 71 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -3.431 -3.394 -3.383 0.285 -2.463 -4.025 2.247 -3.129 -3.393 0.509 -3.825 -1.424 2.465 -3.611 0.702 -2.297 ML 97 95 6 100 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 51 G C - - MP 102 101 6 106 6 2 2 50 69 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.801 -3.122 -4.906 0.160 -5.316 -4.717 -0.666 -5.153 -4.367 3.652 -4.699 -0.824 -1.050 -4.507 -2.707 -3.782 ML 103 101 6 106 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 50 C G - - MP 108 107 6 112 6 2 2 48 67 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.251 -4.210 -3.991 -0.441 -2.742 -4.432 3.408 -3.533 -4.029 -0.207 -4.329 -2.207 0.824 -4.324 0.061 -2.873 ML 109 107 6 112 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 19 49 C G - - MP 114 113 6 118 4 2 2 46 65 -6.978 -7.185 -0.052 -5.600 -4.616 -4.528 -4.295 -0.754 -2.998 -4.698 3.571 -3.815 -4.346 -0.523 -4.600 -2.476 0.510 -4.681 -0.706 -3.184 ML 115 113 6 118 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - A - - - ML 120 119 6 122 3 1 1 43 62 -7.993 -0.020 -6.647 1.066 -1.438 -0.011 -0.876 D 121 119 6 122 3 0 0 42 61 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - A - - - ML 123 122 3 125 3 1 1 42 61 -7.993 -0.020 -6.647 1.731 -2.429 -2.055 -1.977 D 124 122 3 125 3 0 0 41 60 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - G - - - ML 126 125 3 128 3 1 1 41 59 -8.381 -0.018 -6.699 -1.641 -2.871 1.737 -2.258 D 127 125 3 128 3 0 0 39 58 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 48 - G - - MR 129 128 3 131 3 1 1 40 58 -8.381 -0.018 -6.699 -1.641 -2.871 1.737 -2.258 D 130 128 3 131 3 0 0 38 57 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 47 - A - - MR 132 131 3 134 3 1 1 39 57 -8.381 -0.018 -6.699 1.731 -2.429 -2.055 -1.977 D 133 131 3 134 3 0 0 37 56 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 46 - G - - MR 135 134 3 137 3 1 1 38 56 -8.381 -0.018 -6.699 -1.010 -1.964 1.471 -1.074 D 136 134 3 137 3 0 0 36 55 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 45 - G - - MR 138 137 3 140 5 1 1 37 55 -7.118 -0.038 -6.934 -7.146 -8.037 -1.641 -2.871 1.737 -2.258 D 139 137 3 140 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 23 44 C G - - MP 141 140 3 145 6 2 2 36 54 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.367 -4.369 -4.196 -0.668 -1.437 -4.706 3.540 -3.867 -4.247 -0.487 -4.567 -2.423 0.482 -4.504 -0.832 -3.132 ML 142 140 3 145 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 24 43 C G - - MP 147 146 6 151 6 2 2 34 52 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.107 -4.068 -3.873 -0.306 -2.655 -4.337 3.321 -3.430 -3.905 -0.075 -4.224 -2.069 0.932 -4.192 0.367 -2.754 ML 148 146 6 151 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 25 42 c g - - MP 153 152 6 157 6 2 2 32 50 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -2.922 -2.841 -3.006 0.768 -2.410 -3.802 2.257 -2.947 -3.004 1.045 -3.519 -0.254 2.011 -3.163 0.283 -1.953 ML 154 152 6 157 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 26 41 g c - - MP 159 158 6 163 6 2 2 30 48 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -3.422 -2.551 -3.388 1.157 -3.455 -4.052 1.201 -3.656 -3.540 2.872 -3.935 -0.288 0.845 -3.385 -0.998 -2.339 ML 160 158 6 163 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 27 40 c g - - MP 165 164 6 169 6 2 2 28 46 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -2.745 -1.656 -2.838 1.046 -2.634 -3.622 2.056 -3.008 -2.906 2.040 -3.400 -0.159 1.266 -2.927 -0.404 -1.861 ML 166 164 6 169 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 28 39 g c - - MP 171 170 6 175 6 2 2 26 44 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -2.625 -2.365 -2.732 1.155 -2.545 -3.526 1.921 -1.566 -2.798 2.090 -3.302 -0.182 1.195 -2.830 -0.362 -1.783 ML 172 170 6 175 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 29 38 g c - - MP 177 176 6 181 6 2 2 24 42 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -3.127 -2.604 -3.173 1.117 -2.920 -3.950 2.056 -3.279 -3.231 2.266 -3.704 -0.169 1.062 -3.261 -0.564 -2.110 ML 178 176 6 181 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 30 37 g c - - MP 183 182 6 187 6 2 2 22 40 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -2.908 -2.556 -2.973 1.741 -2.687 -3.752 1.887 -3.091 -3.044 1.902 -3.530 -0.492 1.167 -3.072 -0.147 -1.965 ML 184 182 6 187 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 31 36 U G - - MP 189 188 6 193 4 2 2 20 38 -6.978 -7.185 -0.052 -5.600 -4.152 -4.075 -3.840 -0.403 -2.579 -4.255 1.710 -3.357 -3.881 -0.221 -4.166 -2.074 0.852 -4.231 3.043 -2.749 ML 190 188 6 193 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 192 188 6 193 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 193 193 5 193 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 194 194 6 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 32 - U - - - ML 195 194 6 197 3 1 1 16 35 -7.993 -0.020 -6.647 -1.538 -1.526 -2.275 1.633 D 196 194 6 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 33 - A - - - ML 198 197 3 200 3 1 1 15 33 -7.993 -0.020 -6.647 1.731 -2.429 -2.055 -1.977 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 34 - C - - - ML 201 200 3 203 3 1 1 13 31 -7.993 -0.020 -6.647 -1.810 1.642 -2.636 -1.210 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 35 - C - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -1.810 1.642 -2.636 -1.210 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ilvH ACC RF02993 DESC ilvH RNA LENG 68 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 22:48:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02993/CM NSEQ 17 EFFN 3.042236 CKSUM 1991501820 STATS LOCAL MSV -8.0634 0.71902 STATS LOCAL VITERBI -8.7981 0.71902 STATS LOCAL FORWARD -3.2736 0.71902 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35050 1.43910 1.15231 1.67214 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 0.00000 * 1 3.01295 3.92983 0.10418 3.50188 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 2 0.35791 2.78276 1.87549 2.45675 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 3 2.30449 0.29357 3.14776 2.19243 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 4 3.01295 3.92983 0.10418 3.50188 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 5 0.11099 3.55043 3.24513 3.28674 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 6 0.11099 3.55043 3.24513 3.28674 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 7 2.90580 2.82042 3.43346 0.15848 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 8 3.22191 0.13925 3.79302 2.69438 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 9 2.40713 2.00779 2.92558 0.32572 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 10 0.11099 3.55043 3.24513 3.28674 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 11 3.31749 2.18508 3.11821 0.21437 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 12 3.20262 1.73498 3.03594 0.30800 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 13 2.78379 3.54477 0.12950 3.48061 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 14 1.52917 1.24839 1.96820 1.03111 14 u - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 15 2.38599 0.50314 2.24319 1.62327 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 16 2.54317 1.17318 2.31499 0.66702 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 17 2.78812 3.55055 0.12873 3.48848 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 18 3.17349 0.28895 2.96635 1.84766 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 19 3.51763 0.17384 3.33096 2.36297 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 20 0.57087 2.62166 1.35951 2.24903 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 21 0.11099 3.55043 3.24513 3.28674 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 22 3.01295 3.92983 0.10418 3.50188 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 23 3.47842 0.16875 3.29702 2.43687 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 24 3.05511 0.34880 2.84218 1.66574 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 25 2.11997 1.10518 1.72278 0.99359 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 26 1.83570 1.95266 0.59406 1.92060 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 27 1.83029 1.20331 1.12313 1.54097 27 g - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 28 1.79759 1.26604 1.04655 1.60342 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 29 1.87156 1.23029 0.97515 1.73288 29 g - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 30 1.36737 1.36820 1.26998 1.56150 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 31 3.20913 1.73506 3.03927 0.30741 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 32 2.90580 2.82042 3.43346 0.15848 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 33 0.11099 3.55043 3.24513 3.28674 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 34 3.22191 0.13925 3.79302 2.69438 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 35 3.22191 0.13925 3.79302 2.69438 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 36 2.30751 3.22067 0.21310 2.94712 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 37 1.85442 1.39016 1.19394 1.23307 37 g - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 38 1.96479 1.10707 1.12675 1.58376 38 c - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 39 1.83212 1.18291 1.20100 1.45823 39 c - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 40 1.75526 1.23487 1.08832 1.61202 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 41 2.13055 0.66646 1.80294 1.59508 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 42 1.21425 2.04310 0.91768 1.74871 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 43 2.19546 3.00559 0.24924 2.81698 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 44 2.47249 3.46942 0.16646 3.27454 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 45 3.01295 3.92983 0.10418 3.50188 45 G - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 46 2.40918 3.09791 0.26029 2.36297 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 47 0.11099 3.55043 3.24513 3.28674 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 48 3.01295 3.92983 0.10418 3.50188 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 49 2.64151 3.49587 0.14989 3.28010 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 50 2.29419 3.12389 0.22082 2.93165 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 51 3.66492 0.15453 3.38751 2.47950 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 52 0.89305 2.48206 0.89682 2.31101 52 a - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 53 1.75272 2.16091 0.51204 2.18743 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 54 3.67379 0.15394 3.39169 2.48116 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 55 2.30999 3.22488 0.21230 2.95164 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 56 0.24030 3.32400 2.02417 3.09008 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.06963 4.07297 2.99098 1.46634 0.26236 1.09861 0.40547 57 0.31185 2.82708 2.05862 2.51215 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03586 4.03919 4.03919 1.46634 0.26236 0.51751 0.90635 58 0.11099 3.55043 3.24513 3.28674 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 59 0.11099 3.55043 3.24513 3.28674 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 60 1.85505 3.11214 0.31002 2.72392 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 61 0.44048 1.89775 2.46564 2.10856 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 62 3.01295 3.92983 0.10418 3.50188 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 63 1.61578 2.95463 0.39705 2.56571 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 64 0.36329 2.11723 2.54726 2.24476 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 65 0.28490 2.89968 2.13466 2.59580 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 66 1.75767 1.83274 1.58781 0.76958 66 u - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 67 2.52137 0.36804 3.12061 1.69591 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03465 4.07297 4.07297 1.46634 0.26236 1.09861 0.40547 68 1.63229 2.09478 1.73564 0.68293 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.01747 4.05579 * 1.46634 0.26236 0.00000 * //