INFERNAL1/a [1.1.5 | Sep 2023] NAME cow-rumen-4 ACC RF02948 DESC cow-rumen-4 RNA STATES 201 NODES 52 CLEN 64 W 86 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 11:38:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02948/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 4.628906 CKSUM 1772717384 NULL 0.000 0.000 0.000 0.000 GA 48.50 TC 49.80 NC 41.30 EFP7GF -9.7564 0.72294 ECMLC 0.55537 -9.78946 2.21753 1600000 944531 0.001270 ECMGC 0.42345 -13.84645 -0.26816 1600000 125649 0.003183 ECMLI 0.52146 -7.80548 4.43866 1600000 711331 0.001687 ECMGI 0.43110 -10.45390 1.99282 1600000 85585 0.004674 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 115 -7.769 -7.976 -0.030 -6.390 IL 1 1 2 1 4 2 21 89 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 88 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 2 1 19 86 115 -9.248 -0.002 0.622 -1.438 0.409 -0.388 D 4 2 3 5 2 0 18 85 114 -8.445 -0.004 IL 5 5 3 5 2 1 20 87 115 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 2 ] - - - - - - B 6 5 3 7 105 0 18 85 114 [ BEGL 3 ] - - - - - - S 7 6 1 8 4 0 1 46 65 -0.032 -7.306 -6.713 -7.353 [ MATP 4 ] 2 33 U A - - MP 8 7 1 12 6 2 4 46 65 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 -4.193 -4.223 -4.078 -0.523 0.380 -4.646 1.870 -3.734 -4.091 -0.398 -4.484 -2.292 3.038 -4.349 -0.711 -2.985 ML 9 7 1 12 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 10 7 1 12 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 11 7 1 12 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 12 12 5 12 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 13 13 6 13 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 32 A U - - MP 14 13 6 18 6 2 3 44 63 -9.478 -9.417 -0.079 -8.193 -4.476 -8.868 -4.329 -3.114 -4.416 3.289 -5.464 -6.000 -0.967 -4.588 -4.221 1.973 -4.784 -0.528 -1.200 -4.995 -2.904 -3.163 ML 15 13 6 18 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 6 18 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 6 18 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 31 g c - - MP 20 19 6 24 6 2 3 42 61 -9.416 -9.355 -0.017 -8.131 -8.411 -8.806 -3.645 -3.149 -3.630 0.559 -3.110 -4.351 2.047 -3.595 -3.696 2.408 -4.140 -0.944 1.607 -3.728 -0.703 -2.512 ML 21 19 6 24 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 40 59 -7.692 -6.421 -2.329 -6.399 -0.451 -4.612 1.194 -1.093 -0.838 -0.548 D 23 19 6 24 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 30 A U - - MP 26 25 6 30 4 2 2 40 59 -7.518 -8.763 -0.583 -1.623 -3.869 -3.243 -3.900 3.021 -3.606 -4.874 0.672 -3.871 -3.842 0.680 -4.341 -0.889 1.584 -4.242 -1.299 -2.781 ML 27 25 6 30 4 1 1 39 58 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 4 1 1 39 58 -5.368 -13.795 -0.150 -3.751 1.194 -1.093 -0.838 -0.548 D 29 25 6 30 4 0 0 37 56 -12.737 -14.007 -2.036 -0.404 IL 30 30 5 30 4 1 1 39 58 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 29 - C - - MR 32 31 6 34 5 1 1 38 57 -7.366 -0.032 -7.181 -7.393 -8.285 -1.277 1.239 -2.131 -0.002 D 33 31 6 34 5 0 0 37 56 -6.969 -0.195 -4.595 -6.026 -4.021 IR 34 34 3 34 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 28 a u - - MP 35 34 3 39 4 2 2 37 56 -7.769 -7.976 -0.259 -2.685 -4.142 -2.948 -4.193 2.512 -5.238 -5.450 -0.732 -4.485 -4.123 2.108 -4.630 2.037 -0.939 -4.547 -2.654 -3.008 ML 36 34 3 39 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 37 34 3 39 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 38 34 3 39 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 39 39 5 39 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 40 40 6 40 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 7 - A - - - ML 41 40 6 43 5 1 1 34 53 -7.595 -0.027 -7.410 -7.622 -8.514 1.168 -1.378 -1.491 0.019 D 42 40 6 43 5 0 0 33 52 -6.114 -0.307 -5.375 -3.750 -3.663 IL 43 43 3 43 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 27 a u - - MP 44 43 3 48 6 2 2 33 52 -9.478 -9.417 -0.092 -8.193 -8.473 -4.245 -3.773 -2.948 -3.813 2.902 -3.996 -4.793 0.342 -4.008 -3.832 1.836 -4.322 -0.579 0.943 -4.027 -1.617 -2.716 ML 45 43 3 48 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 3 48 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 3 48 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 26 g c - - MP 50 49 6 54 6 2 2 31 50 -9.403 -9.342 -0.017 -8.119 -8.398 -8.793 0.193 -2.496 -3.028 0.927 -3.112 -3.802 0.884 -3.353 -3.162 2.631 -3.637 -0.442 1.340 -3.093 -0.935 -2.109 ML 51 49 6 54 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 29 48 -10.124 -8.823 -0.821 -5.302 -5.319 -1.395 IL 54 54 5 54 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 25 g c - - MP 56 55 6 60 6 2 2 29 48 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 0.357 -2.525 -3.341 1.740 -3.802 -4.144 0.214 -3.759 -3.470 2.509 -3.915 1.187 -0.005 -3.409 -1.560 -2.383 ML 57 55 6 60 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 24 g c - - MP 62 61 6 66 6 2 2 27 46 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 -3.079 -2.705 -3.148 1.686 -2.983 -3.930 1.204 -3.342 -3.248 2.183 -3.735 -0.652 1.535 -3.225 0.284 -2.170 ML 63 61 6 66 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 23 g c - - MP 68 67 6 72 6 2 2 25 44 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 -3.780 -2.728 -3.726 2.244 -4.240 -4.475 0.289 -4.140 -3.930 2.720 -4.315 -0.388 0.653 -3.735 -1.686 -2.673 ML 69 67 6 72 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 22 G C - - MP 74 73 6 78 4 2 2 23 42 -7.769 -7.976 -0.030 -6.390 -6.203 -3.819 -6.619 -0.852 -7.230 -5.232 -2.236 -6.842 -5.168 3.854 -5.428 -1.607 -2.597 -5.387 -4.383 -5.476 ML 75 73 6 78 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 77 73 6 78 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 78 78 5 78 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 79 79 6 79 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 80 79 6 82 3 1 1 21 39 -8.740 -0.012 -7.394 -0.853 -3.006 1.652 -2.481 D 81 79 6 82 3 0 0 20 39 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - U - - - ML 83 82 3 85 3 1 1 19 38 -8.740 -0.012 -7.394 0.146 -1.370 -1.704 1.137 D 84 82 3 85 3 0 0 19 38 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 86 85 3 88 3 1 1 18 37 -8.740 -0.012 -7.394 1.607 -2.138 -2.168 -0.991 D 87 85 3 88 3 0 0 18 37 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - - - ML 89 88 3 91 3 1 1 17 35 -8.740 -0.012 -7.394 1.589 -2.093 -2.132 -0.921 D 90 88 3 91 3 0 0 17 35 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - G - - - ML 92 91 3 94 3 1 1 16 34 -8.740 -0.012 -7.394 -3.072 -4.467 1.913 -3.813 D 93 91 3 94 3 0 0 16 34 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - G - - - ML 95 94 3 97 3 1 1 14 33 -8.740 -0.012 -7.394 -3.072 -4.467 1.913 -3.813 D 96 94 3 97 3 0 0 15 33 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - - - ML 98 97 3 100 3 1 1 13 31 -8.740 -0.012 -7.394 1.908 -3.893 -3.392 -3.583 D 99 97 3 100 3 0 0 13 32 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - A - - - ML 101 100 3 103 2 1 1 1 1 * 0.000 1.908 -3.893 -3.392 -3.583 D 102 100 3 103 2 0 0 0 0 * 0.000 IL 103 103 3 103 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 25 ] - - - - - - E 104 103 3 -1 0 0 0 0 0 [ BEGR 26 ] - - - - - - S 105 6 1 106 3 0 0 54 82 -8.740 -0.141 -3.467 IL 106 106 2 106 3 1 1 56 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 34 - A - - - ML 107 106 2 109 3 1 1 54 82 -8.612 -0.013 -7.266 1.151 -0.731 -1.471 -0.293 D 108 106 2 109 3 0 0 52 81 -7.399 -0.504 -1.791 IL 109 109 3 109 3 1 1 55 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 35 - A - - - ML 110 109 3 112 3 1 1 53 81 -8.740 -0.012 -7.394 1.619 -2.169 -2.194 -1.039 D 111 109 3 112 3 0 0 51 79 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 54 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - U - - - ML 113 112 3 115 3 1 1 52 80 -8.740 -0.227 -2.800 -0.259 -1.503 -1.950 1.352 D 114 112 3 115 3 0 0 50 78 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 53 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 37 - A - - - ML 116 115 3 118 3 1 1 51 79 -8.526 -0.151 -3.372 1.467 -0.875 -1.794 -1.315 D 117 115 3 118 3 0 0 47 75 -7.842 -3.355 -0.155 IL 118 118 3 118 3 1 1 52 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 38 - u - - - ML 119 118 3 121 3 1 1 50 78 -2.095 -0.399 -7.045 0.499 -1.066 -1.306 0.769 D 120 118 3 121 3 0 0 43 71 -8.313 -0.246 -2.704 IL 121 121 3 121 3 1 1 51 80 -0.936 -1.129 -5.645 0.000 0.000 0.000 0.000 [ MATL 32 ] 43 - A - - - ML 122 121 3 124 3 1 1 40 59 -8.740 -0.012 -7.394 1.327 -1.650 -1.754 -0.190 D 123 121 3 124 3 0 0 39 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 44 - U - - - ML 125 124 3 127 3 1 1 39 58 -8.740 -0.012 -7.394 0.070 -1.393 -1.747 1.184 D 126 124 3 127 3 0 0 38 57 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 45 - U - - - ML 128 127 3 130 3 1 1 38 56 -8.740 -0.012 -7.394 -0.432 -1.566 -2.061 1.423 D 129 127 3 130 3 0 0 37 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 46 - U - - - ML 131 130 3 133 5 1 1 37 55 -7.791 -0.024 -7.606 -7.818 -8.710 -0.432 -1.566 -2.061 1.423 D 132 130 3 133 5 0 0 35 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 133 133 3 133 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 47 69 u a - - MP 134 133 3 138 6 2 2 36 54 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 -0.242 -2.543 -2.579 0.606 -2.357 -3.414 1.325 -2.785 -2.623 0.596 -3.176 -0.977 2.639 -2.736 -0.389 -0.121 ML 135 133 3 138 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 48 68 c g - - MP 140 139 6 144 6 2 2 34 52 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 -3.523 -3.293 -3.574 1.029 -2.873 -4.381 2.597 -3.424 -3.552 1.529 -4.059 -1.135 1.533 -3.723 -0.485 -2.414 ML 141 139 6 144 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 49 67 a u - - MP 146 145 6 150 6 2 2 32 50 -9.478 -4.263 -0.092 -8.193 -8.473 -8.868 -3.489 -3.345 -3.532 2.318 -2.889 -4.296 1.981 -3.440 -3.540 0.621 -4.030 -1.320 1.812 -3.710 -0.598 -2.470 ML 147 145 6 150 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 31 49 -2.883 -0.339 -6.394 -4.562 -5.668 0.000 0.000 0.000 0.000 [ MATP 39 ] 50 65 u a - - MP 152 151 6 156 6 2 2 29 48 -9.478 -9.417 -0.016 -8.193 -8.473 -8.868 -3.357 -2.899 -3.422 1.937 -3.206 -4.268 1.080 -3.538 -3.468 1.886 -3.966 -0.727 2.077 -3.557 -0.900 -2.379 ML 153 151 6 156 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 51 64 A U - - MP 158 157 6 162 6 2 2 27 46 -9.478 -9.417 -0.130 -8.193 -8.473 -3.698 -4.019 -3.384 -4.046 3.053 -3.722 -5.034 0.568 -3.991 -3.974 0.498 -4.474 -1.012 1.705 -4.414 -1.410 -2.915 ML 159 157 6 162 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 52 63 g c - - MP 164 163 6 168 6 2 2 25 44 -9.365 -9.305 -0.018 -8.081 -8.361 -8.756 -3.478 -2.682 -3.475 2.212 -3.603 -4.253 1.349 -3.750 -3.614 2.413 -4.047 -0.412 0.430 -3.533 -1.192 -2.433 ML 165 163 6 168 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 23 42 -10.449 -9.147 -4.944 -5.626 -5.644 -0.113 IL 168 168 5 168 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 53 62 C G - - MP 170 169 6 174 4 2 2 23 42 -7.545 -7.752 -0.035 -6.166 -5.803 -5.814 -5.265 -1.983 -3.766 -5.510 3.807 -4.705 -5.387 -1.868 -5.481 -3.813 -0.416 -5.784 -1.535 -4.196 ML 171 169 6 174 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 22 41 -5.909 -5.590 -0.541 -1.860 IL 174 174 5 174 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 54 - A - - - ML 176 175 6 178 3 1 1 21 39 -8.740 -0.012 -7.394 1.498 -2.419 -0.443 -1.988 D 177 175 6 178 3 0 0 20 39 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - U - - - ML 179 178 3 181 3 1 1 19 38 -8.740 -0.012 -7.394 -2.943 -2.705 -3.721 1.864 D 180 178 3 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - A - - - ML 182 181 3 184 3 1 1 18 37 -8.740 -0.012 -7.394 1.908 -3.893 -3.392 -3.583 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 57 - A - - - ML 185 184 3 187 3 1 1 17 35 -8.740 -0.012 -7.394 1.448 -2.375 -0.292 -1.928 D 186 184 3 187 3 0 0 17 35 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 58 - G - - - ML 188 187 3 190 3 1 1 16 34 -8.740 -0.012 -7.394 -3.072 -4.467 1.913 -3.813 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 59 - G - - - ML 191 190 3 193 3 1 1 14 33 -8.740 -0.012 -7.394 -3.072 -4.467 1.913 -3.813 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 60 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.740 -0.012 -7.394 1.908 -3.893 -3.392 -3.583 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 61 - G - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 -0.377 -2.716 1.516 -2.194 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME cow-rumen-4 ACC RF02948 DESC cow-rumen-4 RNA LENG 64 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 11:38:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02948/CM NSEQ 8 EFFN 7.285156 CKSUM 1772717384 STATS LOCAL MSV -8.0504 0.72294 STATS LOCAL VITERBI -8.9888 0.72294 STATS LOCAL FORWARD -3.4543 0.72294 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07491 1.88306 1.39087 1.35599 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 0.00000 * 1 0.92111 2.62152 1.03466 1.74937 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 2 3.53879 1.18650 3.34939 0.46115 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 3 0.35715 3.95130 1.36235 3.68712 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.11063 4.62497 2.35469 1.46634 0.26236 1.09861 0.40547 4 2.43949 1.26941 0.94201 1.41900 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.02167 4.53601 4.53601 1.46634 0.26236 2.45806 0.08949 5 0.46044 2.72103 2.46406 1.52282 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02167 4.53601 4.53601 1.46634 0.26236 0.18778 1.76491 6 0.90707 3.66168 0.62101 3.40504 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.18750 4.62497 1.82534 1.46634 0.26236 1.09861 0.40547 7 0.49254 2.61017 2.69915 1.39376 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.02338 4.46085 4.46085 1.46634 0.26236 0.11481 2.22130 8 0.54184 2.95209 1.46735 1.99836 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.12998 4.62497 2.18854 1.46634 0.26236 1.09861 0.40547 9 1.54910 2.33741 0.71196 1.60792 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.02208 4.51708 4.51708 1.46634 0.26236 0.16122 1.90451 10 1.07172 2.93526 0.61517 2.75018 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 11 1.42790 2.02370 1.06518 1.26105 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 12 1.05193 2.77320 0.75615 2.13025 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 13 3.53004 4.52851 0.05272 4.48716 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 14 2.07489 3.87394 0.19324 3.52785 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 15 1.28432 2.65275 2.89562 0.51510 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 16 0.20984 3.22944 3.29153 2.18474 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 17 0.22080 3.19639 3.26267 2.12925 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 18 4.02321 5.04370 0.03571 4.53391 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 19 4.02321 5.04370 0.03571 4.53391 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 20 0.03526 4.66302 4.28766 4.46769 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 21 0.03526 4.66302 4.28766 4.46769 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 22 4.54840 0.06527 4.40167 3.21019 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 23 2.27110 0.82817 2.58372 0.95591 23 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 24 1.59583 1.14748 1.56421 1.30723 24 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 25 1.86704 0.97537 2.73142 0.90822 25 u - - > 1.38629 1.38629 1.38629 1.38629 0.12998 4.62497 2.18854 1.46634 0.26236 1.09861 0.40547 26 1.30808 0.77912 2.14914 1.86906 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.02208 4.51708 4.51708 1.46634 0.26236 0.16122 1.90451 27 2.07822 1.59561 2.75132 0.49722 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 28 3.66355 1.40155 3.49283 0.35993 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.39150 4.62497 1.15787 1.46634 0.26236 1.09861 0.40547 29 2.63816 0.41753 3.26955 1.46182 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.02859 4.26206 4.26206 1.46634 0.26236 0.06054 2.83450 30 1.48552 2.74665 2.53598 0.46158 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 31 1.43691 1.03937 1.21720 2.18385 31 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 32 3.86504 1.48029 3.71934 0.31853 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 33 0.35401 3.49620 1.46890 3.27973 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.11943 4.62497 2.27522 1.46634 0.26236 1.09861 0.40547 34 0.50637 1.95405 2.66369 1.68239 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.02185 4.52739 4.52739 1.46634 0.26236 0.17461 1.83121 35 0.20261 3.25241 3.31141 2.22325 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 36 1.61391 2.78115 3.12380 0.36394 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.18750 4.62497 1.82534 1.46634 0.26236 1.09861 0.40547 37 0.28821 2.02220 2.99570 2.68783 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.13171 4.46085 2.19057 1.46634 0.26236 2.91445 0.05576 38 0.99942 2.33694 2.49816 0.79176 38 u - - - 1.38629 1.38629 1.38629 1.38629 0.33841 1.29369 4.35516 0.95372 0.48663 0.07660 2.60715 39 0.38785 2.85774 2.95009 1.55233 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 40 1.34640 2.67581 2.93702 0.48135 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 41 1.75495 2.83510 3.21956 0.31691 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 42 1.75495 2.83510 3.21956 0.31691 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 43 1.88322 2.00360 2.41258 0.47246 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 44 1.97774 0.84970 1.57495 1.48255 48 c - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 45 0.94973 1.36677 2.45403 1.30093 49 a - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 46 1.23807 2.22796 1.32829 1.08654 50 u - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 47 0.45822 2.83517 2.60312 1.44884 51 A - - < 1.38629 1.38629 1.38629 1.38629 0.18750 4.62497 1.82534 1.46634 0.26236 1.09861 0.40547 48 1.04603 1.82728 0.94301 2.31906 52 g - - < 1.38629 1.38629 1.38629 1.38629 0.02338 4.46085 4.46085 1.46634 0.26236 2.91445 0.05576 49 4.39796 0.07023 4.32602 3.16307 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.02338 4.46085 4.46085 1.46634 0.26236 0.11481 2.22130 50 0.29105 3.54068 1.67579 3.31410 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 51 3.99214 3.76004 4.54130 0.05383 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 52 0.03526 4.66302 4.28766 4.46769 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 53 0.32428 3.52135 1.56145 3.28174 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 54 4.02321 5.04370 0.03571 4.53391 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 55 4.02321 5.04370 0.03571 4.53391 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 56 0.03526 4.66302 4.28766 4.46769 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 57 1.69979 3.66611 0.27977 3.33141 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.18750 4.62497 1.82534 1.46634 0.26236 1.09861 0.40547 58 3.42883 4.47350 0.06058 4.20303 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02338 4.46085 4.46085 1.46634 0.26236 2.91445 0.05576 59 2.56133 1.03151 1.72111 0.94814 63 u - - > 1.38629 1.38629 1.38629 1.38629 0.02338 4.46085 4.46085 1.46634 0.26236 0.11481 2.22130 60 1.49987 2.90830 2.65984 0.42723 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 61 1.15675 1.43023 2.05414 1.14559 65 u - - > 1.38629 1.38629 1.38629 1.38629 0.12998 2.18854 4.62497 0.16660 1.87428 1.09861 0.40547 62 1.41261 2.62922 1.27138 0.90655 67 u - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 63 1.65080 1.67230 0.78009 1.82062 68 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 64 0.51378 2.59684 1.82452 1.79596 69 A - - > 1.38629 1.38629 1.38629 1.38629 0.00995 4.61512 * 1.46634 0.26236 0.00000 * //