INFERNAL1/a [1.1.5 | Sep 2023] NAME COG3860 ACC RF02940 DESC COG3860 RNA STATES 171 NODES 52 CLEN 54 W 75 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 19:35:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02940/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 42 EFFN 4.991089 CKSUM 1650193843 NULL 0.000 0.000 0.000 0.000 GA 42.50 TC 43.10 NC 41.30 EFP7GF -12.7718 0.71921 ECMLC 0.76289 -7.29181 0.84608 1600000 596229 0.002013 ECMGC 0.37161 -21.78760 -6.46347 1600000 118911 0.003364 ECMLI 0.61739 -8.35570 1.20896 1600000 440291 0.002725 ECMGI 0.38438 -17.79048 -3.79826 1600000 86665 0.004615 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 75 98 -7.711 -8.957 -0.093 -4.160 IL 1 1 2 1 4 1 18 77 99 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 77 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 66 - a - - MR 3 2 3 5 3 1 20 76 98 -9.120 -0.011 -7.438 0.659 -0.951 -0.556 0.292 D 4 2 3 5 3 0 15 74 97 -6.935 -0.874 -1.165 IR 5 5 3 5 3 1 18 76 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 65 - c - - MR 6 5 3 8 3 1 19 75 97 -9.166 -0.011 -7.484 -0.324 0.759 -1.432 0.188 D 7 5 3 8 3 0 13 73 95 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 18 75 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 64 - C - - MR 9 8 3 11 3 1 18 74 96 -9.166 -0.011 -7.484 -1.164 1.501 -2.654 -0.824 D 10 8 3 11 3 0 13 72 94 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 17 74 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 63 - G - - MR 12 11 3 14 3 1 17 73 95 -9.166 -0.011 -7.484 -3.198 -4.605 1.920 -3.941 D 13 11 3 14 3 0 12 71 93 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 73 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 62 - U - - MR 15 14 3 17 3 1 16 72 94 -9.166 -0.011 -7.484 -3.080 -2.823 -3.861 1.876 D 16 14 3 17 3 0 11 70 92 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 72 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - C - - MR 18 17 3 20 3 1 16 71 93 -9.166 -0.011 -7.484 -3.681 1.899 -4.416 -2.780 D 19 17 3 20 3 0 11 69 91 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 15 71 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 60 - C - - MR 21 20 3 23 3 1 15 70 92 -9.166 -0.011 -7.484 -3.681 1.899 -4.416 -2.780 D 22 20 3 23 3 0 10 68 90 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 14 70 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 59 - A - - MR 24 23 3 26 3 1 14 69 91 -9.166 -0.011 -7.484 1.917 -4.033 -3.524 -3.732 D 25 23 3 26 3 0 10 67 89 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 13 69 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 58 - A - - MR 27 26 3 29 3 1 13 68 90 -9.166 -0.011 -7.484 1.775 -3.030 -1.714 -2.723 D 28 26 3 29 3 0 9 66 88 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 68 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 57 - A - - MR 30 29 3 32 3 1 12 67 89 -9.166 -0.011 -7.484 1.846 -3.376 -2.379 -3.097 D 31 29 3 32 3 0 9 65 87 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 67 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 56 - U - - MR 33 32 3 35 3 1 11 66 88 -9.166 -0.011 -7.484 -3.080 -2.823 -3.861 1.876 D 34 32 3 35 3 0 8 64 86 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 66 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - C - - MR 36 35 3 38 3 1 10 65 87 -9.166 -0.011 -7.484 -3.681 1.899 -4.416 -2.780 D 37 35 3 38 3 0 8 63 85 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 10 65 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 54 - G - - MR 39 38 3 41 3 1 9 64 86 -1.879 -0.469 -7.484 -3.198 -4.605 1.920 -3.941 D 40 38 3 41 3 0 7 62 84 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 9 63 86 -3.274 -0.193 -5.513 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - A - - MR 42 41 3 44 2 1 8 62 85 -9.334 -0.002 1.183 -1.053 -1.103 -0.354 D 43 41 3 44 2 0 7 61 84 -4.432 -0.068 IR 44 44 3 44 2 1 8 63 86 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 99 0 7 61 84 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 30 49 -0.031 -7.359 -6.766 -7.406 [ MATP 17 ] 1 17 c g - - MP 47 46 1 51 6 2 2 30 49 -9.521 -9.460 -0.016 -8.237 -8.516 -8.911 -1.460 -1.926 -1.926 1.157 -1.341 -1.046 1.681 -1.865 -1.992 1.532 -2.562 -0.385 1.431 -2.065 -0.146 -0.734 ML 48 46 1 51 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 2 16 G C - - MP 53 52 6 57 6 2 2 28 47 -9.521 -9.460 -0.016 -8.237 -8.516 -8.911 -6.339 -3.889 -6.808 -0.954 -7.407 -5.283 -2.381 -7.014 -5.239 3.865 -5.494 -1.686 -2.742 -5.469 -4.542 -5.664 ML 54 52 6 57 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 3 15 G C - - MP 59 58 6 63 6 2 2 26 45 -9.521 -9.460 -0.027 -6.549 -8.516 -8.911 -6.339 -3.889 -6.808 -0.954 -7.407 -5.283 -2.381 -7.014 -5.239 3.865 -5.494 -1.686 -2.742 -5.469 -4.542 -5.664 ML 60 58 6 63 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 4 14 U A - - MP 65 64 6 69 4 2 2 24 43 -7.831 -8.038 -0.029 -6.452 -6.472 -6.324 -6.042 -2.546 -4.624 -6.398 -0.307 -5.437 -6.033 -2.512 -6.307 -4.192 3.846 -6.484 -2.240 -4.430 ML 66 64 6 69 4 1 1 26 44 -3.892 -4.074 -0.454 -2.804 0.152 -0.369 -0.433 0.458 MR 67 64 6 69 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 68 64 6 69 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 69 69 5 69 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 70 70 6 70 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 5 - C - - - ML 71 70 6 73 3 1 1 22 40 -8.818 -0.011 -7.472 -3.681 1.899 -4.416 -2.780 D 72 70 6 73 3 0 0 21 40 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 6 - g - - - ML 74 73 3 76 3 1 1 20 39 -8.818 -0.011 -7.472 -0.120 -0.507 0.555 -0.142 D 75 73 3 76 3 0 0 20 39 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 7 - G - - - ML 77 76 3 79 3 1 1 19 38 -8.818 -0.011 -7.472 -0.977 -2.351 1.619 -2.156 D 78 76 3 79 3 0 0 19 38 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 8 - C - - - ML 80 79 3 82 3 1 1 18 37 -8.818 -0.011 -7.472 -3.681 1.899 -4.416 -2.780 D 81 79 3 82 3 0 0 18 36 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 9 - A - - - ML 83 82 3 85 3 1 1 17 35 -8.818 -0.011 -7.472 1.917 -4.033 -3.524 -3.732 D 84 82 3 85 3 0 0 17 35 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 10 - G - - - ML 86 85 3 88 3 1 1 16 34 -8.818 -0.011 -7.472 -3.198 -4.605 1.920 -3.941 D 87 85 3 88 3 0 0 16 34 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 11 - U - - - ML 89 88 3 91 3 1 1 14 33 -8.818 -0.111 -3.798 -0.582 -1.693 -2.231 1.490 D 90 88 3 91 3 0 0 14 33 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 12 - U - - - ML 92 91 3 94 3 1 1 13 31 -8.719 -0.012 -7.373 -2.229 -1.607 -2.977 1.736 D 93 91 3 94 3 0 0 13 31 -7.249 -1.099 -0.925 IL 94 94 3 94 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 13 - C - - - ML 95 94 3 97 2 1 1 1 1 * 0.000 -3.609 1.894 -4.354 -2.714 D 96 94 3 97 2 0 0 0 0 * 0.000 IL 97 97 3 97 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 98 97 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 99 45 1 100 3 0 0 44 67 -8.818 -0.011 -7.472 IL 100 100 2 100 3 1 1 46 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 18 - A - - - ML 101 100 2 103 3 1 1 44 67 -8.818 -0.011 -7.472 1.815 -2.992 -2.851 -2.209 D 102 100 2 103 3 0 0 42 65 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 45 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 19 - G - - - ML 104 103 3 106 3 1 1 43 66 -8.818 -0.011 -7.472 -3.198 -4.605 1.920 -3.941 D 105 103 3 106 3 0 0 41 64 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 44 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 20 - G - - - ML 107 106 3 109 3 1 1 42 64 -8.818 -0.011 -7.472 -1.470 -2.922 1.701 -1.969 D 108 106 3 109 3 0 0 40 63 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 43 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 21 - C - - - ML 110 109 3 112 3 1 1 41 63 -8.818 -0.011 -7.472 -3.681 1.899 -4.416 -2.780 D 111 109 3 112 3 0 0 39 62 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 42 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 22 - G - - - ML 113 112 3 115 3 1 1 40 62 -8.818 -0.011 -7.472 -0.035 -1.976 1.196 -1.062 D 114 112 3 115 3 0 0 38 61 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 41 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 23 - U - - - ML 116 115 3 118 3 1 1 39 61 -8.818 -0.011 -7.472 -2.014 -0.873 -2.772 1.614 D 117 115 3 118 3 0 0 37 60 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 40 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 24 - C - - - ML 119 118 3 121 3 1 1 38 60 -8.818 -0.011 -7.472 -2.624 1.713 -3.493 -1.091 D 120 118 3 121 3 0 0 36 59 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 39 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 25 - G - - - ML 122 121 3 124 3 1 1 37 59 -8.818 -0.011 -7.472 -0.963 -3.154 1.684 -2.634 D 123 121 3 124 3 0 0 35 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 38 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 26 - C - - - ML 125 124 3 127 3 1 1 36 58 -8.818 -0.011 -7.472 -2.857 1.771 -3.693 -1.432 D 126 124 3 127 3 0 0 34 57 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 37 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - C - - - ML 128 127 3 130 3 1 1 35 57 -8.818 -0.349 -2.234 -1.799 1.310 -2.722 0.113 D 129 127 3 130 3 0 0 33 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 37 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - G - - - ML 131 130 3 133 5 1 1 34 57 -5.163 -0.062 -7.372 -7.584 -8.476 -0.610 -2.074 1.424 -1.238 D 132 130 3 133 5 0 0 33 55 -6.518 -0.642 -3.524 -4.154 -2.286 IL 133 133 3 133 5 1 1 34 57 -2.529 -0.449 -4.208 -6.040 -5.314 0.000 0.000 0.000 0.000 [ MATP 43 ] 30 51 c g - - MP 134 133 3 138 6 2 2 33 56 -9.466 -9.405 -0.016 -8.182 -8.461 -8.856 -3.464 -3.231 -3.522 0.546 -2.845 -4.332 2.561 -3.388 -3.504 1.692 -4.013 -0.580 1.547 -3.661 -0.275 -2.367 ML 135 133 3 138 6 1 1 32 54 -6.528 -6.874 -0.978 -1.283 -6.724 -4.254 0.802 -0.689 -0.411 -0.178 MR 136 133 3 138 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 28 51 -9.702 -8.401 -4.198 -4.880 -4.897 -0.195 IL 138 138 5 138 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 31 50 c g - - MP 140 139 6 144 6 2 2 31 54 -9.484 -9.423 -0.016 -8.199 -8.479 -8.874 -3.488 -3.334 -3.552 0.954 -2.811 -4.371 2.457 -3.378 -3.514 1.232 -4.032 -1.203 2.026 -3.713 -0.432 -2.390 ML 141 139 6 144 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 26 49 -9.702 -8.401 -4.198 -4.880 -4.897 -0.195 IL 144 144 5 144 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 30 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 32 49 c g - - MP 146 145 6 150 6 2 2 29 52 -9.484 -9.423 -0.016 -8.199 -8.479 -8.874 -3.704 -3.501 -3.734 0.661 -2.894 -4.528 2.770 -3.490 -3.686 1.313 -4.187 -1.305 1.639 -3.906 -0.481 -2.526 ML 147 145 6 150 6 1 1 27 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 27 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 24 47 -9.702 -8.401 -4.198 -4.880 -4.897 -0.195 IL 150 150 5 150 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 33 48 C G - - MP 152 151 6 156 4 2 2 27 50 -2.244 -2.246 -0.820 -6.402 -4.491 -4.324 -4.323 -0.401 -3.137 -4.894 3.331 -3.866 -4.299 0.871 -4.680 -2.123 0.943 -4.608 -0.750 -3.104 ML 153 151 6 156 4 1 1 25 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 24 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 23 45 -5.187 -4.868 -2.884 -0.317 IL 156 156 5 156 4 1 1 27 49 -1.188 -1.184 -3.151 -6.888 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 22 42 -1.332 -0.768 -6.022 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - u - - - ML 158 157 6 160 3 1 1 16 34 -8.751 -0.012 -7.405 0.036 -0.424 0.135 0.178 D 159 157 6 160 3 0 0 15 34 -6.991 -2.504 -0.294 IL 160 160 3 160 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 39 - u - - - ML 161 160 3 163 3 1 1 14 33 -8.751 -0.012 -7.405 0.047 0.024 -1.064 0.558 D 162 160 3 163 3 0 0 14 33 -6.991 -0.717 -1.382 IL 163 163 3 163 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 40 - a - - - ML 164 163 3 166 3 1 1 12 31 -8.818 -0.032 -5.660 0.518 -0.136 -1.095 0.250 D 165 163 3 166 3 0 0 13 32 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - a - - - ML 167 166 3 169 2 1 1 1 1 * 0.000 0.632 -0.277 -0.720 0.025 D 168 166 3 169 2 0 0 0 0 * 0.000 IL 169 169 3 169 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 170 169 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME COG3860 ACC RF02940 DESC COG3860 RNA LENG 54 MAXL 124 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 19:35:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02940/CM NSEQ 42 EFFN 7.498169 CKSUM 1650193843 STATS LOCAL MSV -7.5899 0.71921 STATS LOCAL VITERBI -8.2210 0.71921 STATS LOCAL FORWARD -3.7413 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55150 1.14906 1.30608 1.60815 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 0.00000 * 1 1.67521 1.26698 1.34209 1.31026 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 2 3.58285 4.60587 0.04920 4.58385 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 3 3.57793 4.59746 0.04955 4.57224 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 4 4.63748 3.51651 4.67105 0.04998 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 5 4.44479 0.04263 4.87328 3.80130 5 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 6 1.52820 1.74414 0.93141 1.54047 6 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 7 2.17599 3.16219 0.22095 3.16034 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 8 4.44479 0.04263 4.87327 3.80130 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 9 0.03401 4.69927 4.32254 4.50346 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 10 4.05391 5.07824 0.03460 4.56419 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 11 1.86137 2.89783 3.31466 0.28362 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09537 4.72855 2.49955 1.46634 0.26236 1.09861 0.40547 12 3.31705 2.67568 3.83256 0.13556 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01926 4.65245 4.65245 1.46634 0.26236 0.62569 0.76549 13 4.40323 0.04442 4.83881 3.75953 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.69939 3.72401 1.46634 0.26236 0.38556 1.13964 14 0.05245 4.99792 3.38385 4.56338 14 A - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71384 4.71384 1.46634 0.26236 0.56195 0.84419 15 4.64111 0.06190 4.46920 3.24620 15 C - - > 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 16 4.63483 0.06206 4.46568 3.24507 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 17 1.47208 1.36128 1.28052 1.44254 17 g - - > 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 18 0.09275 3.82639 3.76884 3.13017 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 19 4.05391 5.07824 0.03460 4.56419 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 20 2.56848 3.69099 0.17104 2.88932 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 21 4.44479 0.04263 4.87327 3.80130 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 22 1.44663 3.03721 0.48528 2.29121 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 23 3.18837 2.05673 3.71270 0.21508 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 24 3.65388 0.15175 4.23540 2.29828 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 25 2.14249 3.93866 0.17964 3.59034 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 26 3.82934 0.11672 4.36734 2.58025 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 27 3.00863 0.41272 3.68580 1.33288 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.28306 4.72855 1.43681 1.46634 0.26236 1.09861 0.40547 28 1.92847 3.08338 0.32875 2.41908 28 G - - - 1.38629 1.38629 1.38629 1.38629 0.05261 3.22431 4.46868 0.50157 0.93034 0.30998 1.32225 29 2.28815 0.89282 1.38895 1.42833 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 2.16334 0.12210 30 2.01181 0.98328 1.76650 1.13556 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 2.16334 0.12210 31 2.25541 0.74793 1.71780 1.41731 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 2.16334 0.12210 32 3.19657 0.35559 2.09260 2.00269 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.27270 1.47240 4.67685 0.68465 0.70171 2.16334 0.12210 33 1.39244 1.68703 1.24814 1.27503 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 2.16334 0.12210 34 1.36616 1.34328 2.20490 0.98439 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 0.26121 1.47019 35 0.99861 1.46535 2.24543 1.22170 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03389 4.72855 3.70969 1.46634 0.26236 1.09861 0.40547 36 0.91606 1.56916 1.92659 1.40225 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.68153 0.83472 2.81066 0.54394 0.86859 0.54349 0.86921 37 2.20584 2.16226 0.32429 2.96155 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 2.16334 0.12210 38 1.57317 1.82298 0.68355 2.06951 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01879 4.67685 4.67685 1.46634 0.26236 2.16334 0.12210 39 1.25484 1.88574 0.89853 1.85793 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.04468 4.67685 3.37014 1.46634 0.26236 2.16334 0.12210 40 1.62475 1.53777 0.78902 2.01076 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.01928 4.65146 4.65146 1.46634 0.26236 0.19301 1.73995 41 0.50293 2.21816 2.26197 1.70215 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.39758 1.14189 4.72855 0.05449 2.93687 1.09861 0.40547 42 4.05391 5.07824 0.03460 4.56419 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 43 4.44479 0.04263 4.87328 3.80130 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 44 4.02779 3.79226 4.57759 0.05196 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 45 0.07601 4.13986 3.24856 3.99335 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 46 0.11994 3.88183 2.68293 3.72758 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 47 0.03401 4.69927 4.32254 4.50346 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 48 4.44479 0.04263 4.87327 3.80130 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 49 4.44479 0.04263 4.87327 3.80130 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 50 4.02779 3.79226 4.57759 0.05197 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 51 4.05391 5.07824 0.03460 4.56419 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 52 2.33484 0.27795 3.59259 2.13442 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.01784 4.72855 4.72855 1.46634 0.26236 1.09861 0.40547 53 1.68173 0.78051 2.53313 1.28604 65 c - - : 1.38629 1.38629 1.38629 1.38629 0.05525 4.72855 3.10301 1.46634 0.26236 1.09861 0.40547 54 0.89419 2.15227 1.79529 1.17518 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.00930 4.68260 * 1.46634 0.26236 0.00000 * //