INFERNAL1/a [1.1.5 | Sep 2023] NAME DUF3800-VI ACC RF02915 DESC DUF3800-VI RNA STATES 165 NODES 38 CLEN 52 W 69 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 17:22:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02915/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 87 EFFN 34.571136 CKSUM 907066647 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.60 NC 34.90 EFP7GF -16.7151 0.72446 ECMLC 0.62648 -5.33590 3.63265 1600000 330622 0.003630 ECMGC 0.39191 -19.71685 -5.76408 1600000 94815 0.004219 ECMLI 0.62007 -4.86841 4.10490 1600000 313071 0.003833 ECMGI 0.41418 -16.23308 -3.44706 1600000 79789 0.005013 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 69 87 -11.289 -11.229 -0.246 -10.005 -2.694 -10.680 IL 1 1 2 1 6 1 17 71 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 18 71 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 67 c g - - MP 3 2 3 7 6 3 23 69 87 -11.048 -10.988 -0.005 -9.764 -10.044 -10.439 -1.279 -1.359 -3.048 -0.101 -2.985 -3.900 2.743 -1.689 -1.349 1.223 -3.679 -1.681 0.554 -3.190 -0.204 0.469 ML 4 2 3 7 6 1 16 68 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 19 68 86 -10.167 -8.896 -0.370 -8.874 -2.225 -7.088 -0.255 0.445 -0.341 0.016 D 6 2 3 7 6 0 12 66 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 17 69 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 17 69 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 G U - - MP 9 8 6 13 6 3 23 67 85 -11.251 -11.190 -0.005 -9.967 -10.247 -10.642 -6.897 -5.563 -7.016 1.665 -8.700 -9.149 1.003 -7.158 -6.725 1.337 -7.330 3.025 -4.144 -7.860 -5.953 -5.685 ML 10 8 6 13 6 1 16 66 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 17 66 84 -8.235 -6.964 -0.483 -6.942 -2.076 -5.156 0.335 -0.668 -0.899 0.653 D 12 8 6 13 6 0 12 64 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 17 67 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 17 67 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 G C - - MP 15 14 6 19 6 3 22 65 83 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -8.537 -5.816 -9.411 0.850 -10.308 -7.218 -4.962 -9.399 -7.145 3.807 -7.414 -3.618 -5.243 -7.553 -7.243 -8.148 ML 16 14 6 19 6 1 15 64 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 64 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 62 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 17 65 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 17 65 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 64 U G - - MP 21 20 6 25 6 2 21 63 81 -3.569 -11.229 -0.131 -10.005 -10.285 -10.680 -7.376 -7.346 -6.998 -3.351 -5.538 -7.372 1.625 -6.367 -7.007 0.532 -2.819 -5.215 -0.345 -7.379 3.330 -1.805 ML 22 20 6 25 6 1 15 62 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 15 62 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 11 59 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 18 63 81 -4.822 -0.289 -3.003 -6.740 -7.517 -7.177 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 18 62 80 -4.116 -0.135 -7.627 -5.795 -6.901 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 62 U G - - MP 27 26 6 31 6 2 19 61 79 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -8.118 -8.384 -7.447 -4.607 -5.804 -7.599 2.468 -6.716 -7.547 -4.570 -7.673 -6.752 -0.194 -7.959 3.206 -2.220 ML 28 26 6 31 6 1 15 60 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 14 60 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 11 57 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 16 61 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 16 60 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 61 G C - - MP 33 32 6 37 6 2 17 59 77 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -6.958 -5.371 -7.036 1.817 -8.497 -7.600 -3.608 -7.368 -6.696 3.379 -7.127 0.849 -3.797 -7.080 -5.610 -5.819 ML 34 32 6 37 6 1 14 58 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 14 58 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 11 56 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 15 59 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 15 58 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 60 g c - - MP 39 38 6 43 6 2 15 57 75 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -5.843 -4.417 -5.702 2.596 -6.862 -2.318 -1.927 -6.343 -5.980 2.955 -6.255 0.334 -2.187 -5.550 -3.938 -4.645 ML 40 38 6 43 6 1 13 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 13 57 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 10 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 14 57 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 14 57 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 59 G C - - MP 45 44 6 49 4 2 13 55 73 -10.308 -10.515 -0.005 -8.930 -8.970 -5.850 -10.492 -0.964 -10.679 -7.094 -5.115 -10.255 -7.202 3.936 -7.423 -3.735 -5.450 -7.525 -7.506 -9.310 ML 46 44 6 49 4 1 12 56 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 11 56 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 10 55 74 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 12 58 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 12 57 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 51 50 6 53 2 1 11 53 70 -11.859 -0.000 1.991 -7.346 -6.658 -6.816 D 52 50 6 53 2 0 10 52 69 -8.445 -0.004 IL 53 53 3 53 2 1 11 54 72 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 54 53 3 55 114 0 10 52 69 [ BEGL 11 ] - - - - - - S 55 54 1 56 4 0 0 33 50 -0.008 -9.340 -8.747 -9.387 [ MATP 12 ] 11 34 G C - - MP 56 55 1 60 6 2 2 33 50 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -8.985 -2.492 -10.536 -1.310 -10.681 -7.078 -5.101 -10.317 -7.202 3.931 -7.418 -3.736 -5.436 -7.508 -7.495 -9.383 ML 57 55 1 60 6 1 1 31 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 31 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 29 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 32 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 33 g c - - MP 62 61 6 66 6 2 2 31 48 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -5.345 -2.283 -5.185 1.201 -6.157 -5.794 -0.067 -5.827 -5.593 2.568 -5.861 1.804 0.073 -5.055 0.881 -4.153 ML 63 61 6 66 6 1 1 29 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 29 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 27 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 31 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 30 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 32 G U - - MP 68 67 6 72 6 2 2 29 46 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -7.066 -5.747 -7.208 -0.658 -8.716 -9.662 -1.261 -7.264 -6.848 1.281 -7.476 3.514 0.004 -8.256 -6.082 -5.846 ML 69 67 6 72 6 1 1 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 31 C G - - MP 74 73 6 78 6 2 2 27 44 -11.289 -11.229 -0.021 -10.005 -10.285 -6.405 -8.136 -8.412 -7.457 -4.645 -5.809 -7.603 3.864 -6.723 -7.559 -4.614 -7.681 -6.805 -0.732 -7.972 -0.556 -6.361 ML 75 73 6 78 6 1 1 26 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 30 u g - - MP 80 79 6 84 6 2 2 25 42 -11.273 -11.212 -0.095 -9.989 -6.379 -4.323 -4.678 -4.671 -1.560 -1.035 -4.180 -5.627 2.020 -4.720 -4.766 -0.014 -2.851 -0.447 0.315 -2.042 2.900 -3.725 ML 81 79 6 84 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 23 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 38 -9.944 -8.642 -4.439 -5.122 -5.139 -0.163 IL 84 84 5 84 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 29 G C - - MP 86 85 6 90 6 2 2 23 40 -11.183 -11.122 -0.288 -9.899 -10.178 -2.486 -5.328 -3.967 -5.149 0.614 -6.278 -5.750 -1.346 -2.490 -5.579 3.421 -5.829 0.847 -0.643 -5.008 -1.087 -4.112 ML 87 85 6 90 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 22 39 -7.648 -6.377 -2.286 -6.356 -0.467 -4.569 -0.288 0.774 -1.012 -0.036 D 89 85 6 90 6 0 0 20 37 -11.537 -10.235 -6.032 -6.714 -6.731 -0.052 IL 90 90 5 90 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 28 C G - - MP 92 91 6 96 4 2 2 21 38 -4.434 -1.686 -0.644 -8.469 -7.621 -7.865 -6.968 -4.066 -5.333 -7.131 3.750 -6.242 -7.063 -4.016 -7.196 -6.183 0.914 -7.472 -1.215 -5.861 ML 93 91 6 96 4 1 1 20 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 20 37 -5.549 -1.175 -2.445 -1.506 -0.186 -1.119 0.978 -0.535 D 95 91 6 96 4 0 0 19 36 -8.670 -0.532 -1.915 -4.622 IL 96 96 5 96 4 1 1 21 38 -2.993 -0.569 -2.424 -6.162 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 20 37 -1.624 -0.573 -8.147 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - c - - - ML 98 97 6 100 3 1 1 15 34 -11.228 -0.002 -9.882 0.249 0.959 -1.233 -1.178 D 99 97 6 100 3 0 0 16 35 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 101 100 3 103 3 1 1 14 32 -11.228 -0.002 -9.882 0.076 -0.840 -0.811 0.862 D 102 100 3 103 3 0 0 15 34 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 104 103 3 106 3 1 1 12 31 -11.228 -0.011 -7.076 -0.087 -0.957 -1.334 1.102 D 105 103 3 106 3 0 0 14 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 107 106 3 109 3 1 1 11 29 -11.219 -0.516 -1.736 -0.099 -0.516 -1.725 1.046 D 108 106 3 109 3 0 0 13 31 -6.820 -2.333 -0.335 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - a - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 0.622 -0.933 -0.426 0.255 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 24 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 25 ] - - - - - - S 114 54 1 115 3 0 0 31 48 -11.228 -0.002 -9.882 IL 115 115 2 115 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 35 - G - - - ML 116 115 2 118 3 1 1 31 48 -11.228 -0.002 -9.882 -2.820 -7.123 1.941 -6.303 D 117 115 2 118 3 0 0 30 48 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 36 - u - - - ML 119 118 3 121 5 1 1 30 46 -10.183 -0.005 -9.998 -10.210 -11.102 -3.551 0.862 -2.839 0.969 D 120 118 3 121 5 0 0 28 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 121 121 3 121 5 1 1 30 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 37 58 u a - - MP 122 121 3 126 6 2 2 29 45 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -2.122 -4.975 -5.169 -0.662 -1.208 -6.014 2.070 -4.930 -5.097 0.065 -5.629 -2.803 2.916 -5.337 0.361 -1.714 ML 123 121 3 126 6 1 1 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 29 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 38 57 G C - - MP 128 127 6 132 6 2 2 27 43 -11.289 -11.229 -0.005 -10.005 -10.285 -10.680 -2.917 -4.419 -5.673 1.679 -6.845 -6.291 -1.923 -6.296 -5.970 3.486 -6.262 -2.029 -0.522 -5.569 -3.929 -4.606 ML 129 127 6 132 6 1 1 25 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 27 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 39 56 G C - - MP 134 133 6 138 6 2 2 25 41 -11.289 -11.229 -0.075 -6.825 -4.849 -7.304 -5.450 -4.085 -5.273 1.765 -6.405 -5.871 -0.726 -5.955 -5.695 3.278 -5.947 0.129 -0.244 -5.131 -3.481 -4.235 ML 135 133 6 138 6 1 1 23 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 23 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 25 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 40 55 G C - - MP 140 139 6 144 6 2 2 23 39 -11.219 -11.158 -0.271 -9.935 -10.215 -2.571 -5.476 -4.113 -2.373 1.837 -6.461 -5.940 -0.540 -5.972 -5.705 3.398 -5.973 -1.342 -1.794 -5.192 -3.539 -4.261 ML 141 139 6 144 6 1 1 22 38 -6.809 -7.155 -0.749 -1.564 -7.005 -4.535 1.038 -0.906 -0.651 -0.366 MR 142 139 6 144 6 1 1 22 38 -8.461 -7.190 -0.402 -7.168 -2.302 -5.382 -1.112 -1.176 -1.823 1.492 D 143 139 6 144 6 0 0 19 35 -9.574 -8.273 -4.070 -4.752 -4.769 -0.214 IL 144 144 5 144 6 1 1 23 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 22 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 54 g c - - MP 146 145 6 150 4 2 2 21 38 -1.439 -1.730 -1.612 -8.623 -4.926 -4.004 -4.862 1.562 -5.007 -5.552 2.031 -5.177 -5.094 2.636 -1.556 -0.913 0.297 -4.830 -1.729 -3.795 ML 147 145 6 150 4 1 1 18 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 17 34 -8.255 -2.217 -0.459 -4.207 IL 150 150 5 150 4 1 1 20 36 -3.714 -0.166 -5.045 -8.782 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 18 35 -1.685 -0.543 -8.442 0.000 0.000 0.000 0.000 [ MATL 33 ] 44 - u - - - ML 152 151 6 154 3 1 1 14 32 -11.228 -0.002 -9.882 -0.318 -0.748 -0.006 0.684 D 153 151 6 154 3 0 0 16 34 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 45 - u - - - ML 155 154 3 157 3 1 1 12 31 -11.228 -0.002 -9.882 0.086 -0.812 -1.314 0.976 D 156 154 3 157 3 0 0 14 33 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 46 - u - - - ML 158 157 3 160 3 1 1 11 29 -11.228 -0.095 -3.975 0.609 -1.046 -1.918 0.787 D 159 157 3 160 3 0 0 13 32 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 47 - a - - - ML 161 160 3 163 2 1 1 1 1 * 0.000 0.802 -1.651 -0.382 0.227 D 162 160 3 163 2 0 0 0 0 * 0.000 IL 163 163 3 163 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 164 163 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME DUF3800-VI ACC RF02915 DESC DUF3800-VI RNA LENG 52 MAXL 106 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 17:22:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02915/CM NSEQ 87 EFFN 66.112885 CKSUM 907066647 STATS LOCAL MSV -7.7031 0.72446 STATS LOCAL VITERBI -8.3930 0.72446 STATS LOCAL FORWARD -3.5233 0.72446 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.91464 1.31663 1.04793 1.45285 1.38629 1.38629 1.38629 1.38629 0.20257 6.79347 1.70236 1.46634 0.26236 0.00000 * 1 2.47148 0.67663 1.68480 1.50628 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00274 6.59363 6.59363 1.46634 0.26236 0.19845 1.71479 2 1.62471 2.06102 0.39616 5.87437 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00232 6.76201 6.76201 1.46634 0.26236 0.06754 2.72860 3 2.13259 6.43273 0.12993 6.37586 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 4 5.82146 1.68434 2.30849 0.33960 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.10755 2.29417 6.79347 0.02209 3.82378 1.09861 0.40547 5 6.00275 1.06692 5.99487 0.42929 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 6 1.48927 6.05504 0.26256 5.79678 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 7 0.89629 3.89934 0.57359 4.80793 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 8 3.42522 6.40785 0.03654 6.38443 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 9 0.00346 7.10190 6.59012 6.68036 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 10 3.33019 6.51302 0.03949 6.53484 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 11 1.87684 2.88719 0.51531 1.64052 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 12 3.36922 3.67857 0.13192 2.75025 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 13 6.14764 0.08257 6.09188 2.59217 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01569 6.79347 4.23701 1.46634 0.26236 1.09861 0.40547 14 3.27059 1.37090 2.25604 0.50522 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.07572 6.78005 2.63400 1.46634 0.26236 2.70070 0.06952 15 2.43951 3.57433 0.20301 2.68100 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.24121 6.70677 1.54600 1.46634 0.26236 4.34476 0.01306 16 5.73675 0.15744 5.70278 1.97251 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.05119 3.02934 6.46867 0.06298 2.79625 0.00802 4.82980 17 1.20769 0.67860 2.28234 2.38880 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 18 1.34932 2.01065 1.98018 0.75793 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 19 1.46750 2.10070 2.39135 0.58767 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00888 6.79347 4.86427 1.46634 0.26236 1.09861 0.40547 20 1.47460 1.75884 2.71966 0.62926 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.35060 6.78685 1.22211 1.46634 0.26236 2.18425 0.11942 21 0.92773 2.10370 1.68249 1.21525 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.89770 0.57445 3.52419 0.19776 1.71794 0.20092 1.70362 22 2.15411 5.61099 0.13327 5.27647 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.06858 6.71852 2.73218 1.46634 0.26236 0.19714 1.72077 23 3.26103 0.35625 3.05469 1.54076 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.00242 6.72032 6.72032 1.46634 0.26236 0.23663 1.55724 24 2.81677 2.71606 0.20892 2.77094 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.00228 6.78005 6.78005 1.46634 0.26236 0.14424 2.00755 25 3.36670 6.21523 0.03997 5.92042 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 26 2.75646 1.90448 3.65674 0.27211 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 27 2.72375 0.98755 1.69858 0.97037 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 28 6.47543 0.03065 6.37207 3.61439 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 29 3.33513 7.08921 0.03876 6.45676 35 G - - , 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 30 4.47459 0.77618 3.44069 0.70037 36 u - - , 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 31 3.11321 1.24341 2.78787 0.50155 37 U - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 32 1.54795 4.92536 0.30426 3.16081 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 33 1.51275 3.43026 0.36938 2.87958 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.05059 6.79347 3.03218 1.46634 0.26236 1.09861 0.40547 34 1.39364 3.26841 0.36064 4.10236 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.22175 6.74523 1.62097 1.46634 0.26236 0.19381 1.73621 35 1.64500 1.30058 0.80442 2.43877 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.47997 0.96809 6.57789 0.06836 2.71699 0.01143 4.47722 36 1.66426 1.93693 1.36411 0.88937 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 37 1.33781 1.98824 2.38361 0.67643 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 38 0.94349 2.17473 2.91225 0.81477 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 39 0.80099 2.69769 1.64866 1.23290 47 a - - _ 1.38629 1.38629 1.38629 1.38629 1.05120 0.69343 1.89297 0.41727 1.07542 1.09861 0.40547 40 2.62446 0.92112 1.17260 1.51464 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.01374 6.63153 4.39561 1.46634 0.26236 0.05991 2.84474 41 4.31659 0.40913 2.96499 1.30612 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.00228 6.77732 6.77732 1.46634 0.26236 0.12297 2.15664 42 2.95854 0.46742 3.33593 1.25209 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 43 3.02466 0.31175 4.73125 1.55853 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 44 0.59967 2.85914 1.07569 2.94452 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 45 6.32713 0.03895 6.27875 3.36571 59 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 46 5.01412 0.69543 4.77323 0.72146 60 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 47 5.80760 0.42429 5.78790 1.07971 61 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 48 2.94589 5.98024 0.07408 4.11522 62 G - - ) 1.38629 1.38629 1.38629 1.38629 0.10755 2.29417 6.79347 0.02209 3.82378 1.09861 0.40547 49 3.14736 2.40393 0.16857 3.82591 64 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 50 5.79131 0.13590 5.89890 2.10968 65 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 51 4.37741 1.88473 2.06120 0.34493 66 U - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 52 2.00341 1.55447 0.73124 1.75729 67 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00112 6.79234 * 1.46634 0.26236 0.00000 * //