INFERNAL1/a [1.1.5 | Sep 2023] NAME Ref55 ACC RF02838 DESC Enterococcus sRNA 55 STATES 166 NODES 41 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 23:40:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02838/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 4.000000 CKSUM 1311230568 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 47.70 NC 42.10 EFP7GF -7.3517 0.72893 ECMLC 0.46895 -8.75072 4.47267 1600000 591921 0.002027 ECMGC 0.49337 -12.56296 0.48331 1600000 249727 0.001602 ECMLI 0.48561 -6.23936 5.71735 1600000 398871 0.003008 ECMGI 0.50600 -8.97326 2.92629 1600000 164831 0.002427 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -7.615 -7.822 -0.033 -6.236 IL 1 1 2 1 4 1 8 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 8 69 88 -8.593 -0.013 -7.247 -0.922 -1.329 -0.302 1.178 D 4 2 3 5 3 0 2 68 87 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 6 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 8 68 87 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 7 5 3 8 3 0 1 67 86 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 7 67 86 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 10 8 3 11 3 0 0 66 85 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 5 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 6 66 85 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 13 11 3 14 3 0 0 65 84 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 4 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 6 65 84 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 16 14 3 17 3 0 0 64 83 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 5 64 83 -8.593 -0.013 -7.247 0.825 -1.230 -1.405 0.511 D 19 17 3 20 3 0 0 62 82 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 3 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 4 63 82 -2.724 -0.248 -7.247 -2.677 -2.478 -3.451 1.837 D 22 20 3 23 3 0 0 61 80 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 3 63 82 -2.059 -0.468 -4.759 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - U - - - ML 24 23 3 26 3 1 4 61 80 -8.593 -0.013 -7.247 -0.005 -1.296 -1.670 1.190 D 25 23 3 26 3 0 0 60 79 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 2 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - - - ML 27 26 3 29 3 1 4 60 79 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 28 26 3 29 3 0 0 59 78 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 2 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - U - - - ML 30 29 3 32 3 1 3 59 78 -8.593 -0.013 -7.247 -0.922 -1.329 -0.302 1.178 D 31 29 3 32 3 0 0 58 77 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - G - - - ML 33 32 3 35 3 1 3 58 77 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 34 32 3 35 3 0 0 57 76 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - u - - - ML 36 35 3 38 3 1 2 57 76 -8.593 -0.013 -7.247 0.231 -1.057 -0.095 0.495 D 37 35 3 38 3 0 0 56 75 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - U - - - ML 39 38 3 41 3 1 2 56 75 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 40 38 3 41 3 0 0 55 74 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - U - - - ML 42 41 3 44 3 1 1 55 74 -8.950 -0.012 -7.267 -0.005 -1.296 -1.670 1.190 D 43 41 3 44 3 0 0 54 72 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - G - - MR 45 44 3 47 3 1 1 54 73 -8.950 -0.012 -7.267 0.137 -2.282 1.260 -1.738 D 46 44 3 47 3 0 0 52 71 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - U - - MR 48 47 3 50 3 1 1 53 72 -8.950 -0.012 -7.267 -2.677 -2.478 -3.451 1.837 D 49 47 3 50 3 0 0 51 70 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - U - - MR 51 50 3 53 3 1 1 52 71 -8.950 -0.012 -7.267 -2.677 -2.478 -3.451 1.837 D 52 50 3 53 3 0 0 50 69 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - U - - MR 54 53 3 56 3 1 1 51 70 -8.950 -0.012 -7.267 -0.922 -1.329 -0.302 1.178 D 55 53 3 56 3 0 0 49 68 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - U - - MR 57 56 3 59 5 1 1 50 69 -7.656 -0.026 -7.471 -7.683 -8.575 -2.677 -2.478 -3.451 1.837 D 58 56 3 59 5 0 0 49 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 50 A U - - MP 60 59 3 64 6 2 2 49 68 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.003 -3.794 -4.847 3.771 -5.908 -7.143 -1.529 -4.807 -4.794 -0.246 -5.395 -1.126 -1.928 -6.065 -3.460 -3.682 ML 61 59 3 64 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 49 G C - - MP 66 65 6 70 4 2 2 47 66 -7.615 -7.822 -0.366 -2.220 -5.941 -3.685 -6.268 -0.655 -6.883 -5.136 -1.953 -6.515 -5.029 3.829 -5.299 -1.454 -2.316 -5.228 -4.074 -5.128 ML 67 65 6 70 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - - - ML 72 71 6 74 5 1 1 44 63 -7.377 -0.032 -7.193 -7.405 -8.296 -0.378 -0.084 0.071 0.306 D 73 71 6 74 5 0 0 43 62 -6.307 -0.265 -5.569 -3.943 -3.856 IL 74 74 3 74 5 1 1 45 63 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 48 g c - - MP 75 74 3 79 6 2 2 43 62 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -3.212 -2.671 -3.262 2.014 -3.245 -4.063 0.949 -3.500 -3.367 2.241 -3.840 -0.518 0.605 -3.352 0.991 -2.271 ML 76 74 3 79 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 47 G C - - MP 81 80 6 85 6 2 2 41 60 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.410 -2.983 -4.390 1.707 -5.325 -4.890 -0.575 -4.823 -4.334 3.339 -4.701 -0.587 -0.849 -4.310 -2.579 -3.274 ML 82 80 6 85 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 46 c g - - MP 87 86 6 91 6 2 2 39 58 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -3.957 -3.148 -4.033 0.194 -3.420 -4.646 2.490 -3.804 -3.833 0.469 -4.199 2.413 0.367 -4.289 -1.061 -2.827 ML 88 86 6 91 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 45 C G - - MP 93 92 6 97 6 2 2 37 56 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.794 -4.850 -4.440 -1.044 -3.056 -4.806 3.008 -3.880 -4.481 -0.908 -4.750 -2.908 0.448 -4.818 2.287 -3.310 ML 94 92 6 97 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 44 u a - - MP 99 98 6 103 6 2 2 35 54 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.508 -4.476 -4.272 -0.623 -3.008 -4.750 2.373 -3.782 -4.281 -0.448 -4.616 -2.416 2.999 -4.594 -0.662 -3.109 ML 100 98 6 103 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 43 a u - - MP 105 104 6 109 6 2 2 33 52 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -3.902 -3.436 -3.881 2.825 -3.292 -4.686 2.123 -3.753 -3.862 0.567 -4.320 -1.175 0.445 -4.170 -0.975 -2.772 ML 106 104 6 109 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 42 C G - - MP 111 110 6 115 6 2 2 31 50 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 112 110 6 115 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 41 U G - - MP 117 116 6 121 6 2 2 29 48 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.006 -5.113 -4.559 -1.337 -3.095 -4.852 2.406 -3.949 -4.621 -1.224 -4.843 -3.251 0.317 -4.980 3.002 -3.446 ML 118 116 6 121 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 40 U A - - MP 123 122 6 127 6 2 2 27 46 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.511 -4.479 -4.274 -0.626 -3.008 -4.751 2.363 -3.783 -4.283 -0.452 -4.618 -2.420 3.006 -4.597 -0.663 -3.111 ML 124 122 6 127 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 39 C G - - MP 129 128 6 133 6 2 2 25 44 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 130 128 6 133 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 38 G C - - MP 135 134 6 139 6 2 2 23 42 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.941 -3.685 -6.268 -0.655 -6.883 -5.136 -1.953 -6.515 -5.029 3.829 -5.299 -1.454 -2.316 -5.228 -4.074 -5.128 ML 136 134 6 139 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 30 37 u a - - MP 141 140 6 145 6 2 2 21 40 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.508 -4.476 -4.272 -0.623 -3.008 -4.750 2.373 -3.782 -4.281 -0.448 -4.616 -2.416 2.999 -4.594 -0.662 -3.109 ML 142 140 6 145 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 31 36 u g - - MP 147 146 6 151 4 2 2 19 38 -7.615 -7.822 -0.033 -6.236 -4.767 -4.827 -4.419 -1.088 -3.065 -4.787 1.247 -3.883 -4.468 -0.963 -4.736 -2.925 2.064 -4.802 2.957 -3.315 ML 148 146 6 151 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - G - - - ML 153 152 6 155 3 1 1 16 34 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 154 152 6 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - g - - - ML 156 155 3 158 3 1 1 14 33 -8.593 -0.013 -7.247 0.065 -1.218 0.526 0.117 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - c - - - ML 159 158 3 161 3 1 1 13 31 -8.593 -0.013 -7.247 -0.572 0.320 -0.222 0.289 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - a - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 0.847 -2.054 0.686 -1.505 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Ref55 ACC RF02838 DESC Enterococcus sRNA 55 LENG 54 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 23:40:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02838/CM NSEQ 4 EFFN 3.386719 CKSUM 1311230568 STATS LOCAL MSV -8.4971 0.72893 STATS LOCAL VITERBI -8.7817 0.72893 STATS LOCAL FORWARD -3.1752 0.72893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64461 1.65096 1.28209 1.08593 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 1.93165 2.21904 1.59897 0.60831 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 0.09633 3.68442 3.36743 3.43442 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 3.03536 2.92910 3.56656 0.13898 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 0.09633 3.68442 3.36743 3.43442 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 3.03536 2.92910 3.56656 0.13898 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.83877 2.16821 2.29091 1.04355 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 3.03536 2.92910 3.56656 0.13898 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.18983 1.85298 4.12713 0.19441 1.73340 1.09861 0.40547 8 1.37980 2.19803 2.45331 0.59540 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 3.03536 2.92910 3.56656 0.13898 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.93165 2.21904 1.59897 0.60831 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 3.14286 4.07382 0.09033 3.64206 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 1.22550 2.07082 1.46297 1.05337 13 u - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 3.03536 2.92910 3.56656 0.13898 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 1.37980 2.19803 2.45331 0.59540 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 0.19875 3.34253 2.24394 3.24780 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 2.87857 3.68197 0.11444 3.62138 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.24067 4.12713 1.62065 1.46634 0.26236 1.09861 0.40547 17 1.60910 1.45742 1.35963 1.17009 18 u - - - 1.38629 1.38629 1.38629 1.38629 0.04022 3.92668 3.92668 1.46634 0.26236 0.15110 1.96443 18 1.32863 1.89234 1.06841 1.42343 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 1.53195 2.88288 0.40988 2.74602 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 2.27490 1.05864 0.89615 1.95102 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 3.01915 0.69138 2.82657 0.93890 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.80532 1.08070 2.57798 0.64583 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 0.86453 1.26864 1.89433 1.91651 24 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.64992 0.15146 3.48427 2.47843 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 3.18420 1.05710 3.00939 0.57660 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.80814 1.08645 2.58036 0.64146 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 3.65107 0.15138 3.48489 2.47865 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 2.87150 3.67213 0.11557 3.60803 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 2.80654 1.08057 2.57851 0.64569 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 3.02203 1.70043 2.83229 0.34275 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 3.14286 4.07382 0.09033 3.64206 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 1.32884 2.17308 1.05241 1.30088 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.72733 1.19366 1.55175 1.18008 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 0.82197 2.67841 0.94076 2.28837 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 1.30158 2.99239 0.48438 2.78625 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 0.72169 2.74518 0.98549 2.56947 37 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.77693 0.13876 3.51610 2.56456 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 2.75617 3.64859 0.13040 3.42050 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 0.71708 2.74684 0.99092 2.57096 40 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.24930 3.16217 0.22374 2.94365 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 2.75481 3.64647 0.13065 3.41811 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 2.16068 2.08598 1.17188 0.79676 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 0.72208 2.74287 0.98597 2.56657 44 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.16534 2.98124 0.25830 2.77746 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.18613 2.10565 0.98350 0.93680 46 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 2.94931 0.46965 2.68486 1.36975 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 2.04025 1.18048 1.35026 1.19172 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 3.81403 0.13659 3.53398 2.57145 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.48568 2.59276 3.15729 0.16015 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.03536 2.92910 3.56656 0.13898 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 1.93165 2.21904 1.59897 0.60831 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 3.03536 2.92910 3.56656 0.13898 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.03536 2.92910 3.56656 0.13898 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 1.28371 2.83845 0.54775 2.45075 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //