INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR208 ACC RF02806 DESC Pyrobaculum sRNA 208 STATES 184 NODES 47 CLEN 60 W 74 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 05:01:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02806/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 3.011719 CKSUM 1047413749 NULL 0.000 0.000 0.000 0.000 GA 64.00 TC 74.90 NC 41.90 EFP7GF -10.0358 0.72101 ECMLC 0.54948 -10.21038 0.65376 1600000 469642 0.002555 ECMGC 0.36453 -20.49624 -4.64982 1600000 129050 0.003100 ECMLI 0.54604 -8.50630 1.46607 1600000 278012 0.004316 ECMGI 0.38781 -15.89940 -2.02114 1600000 86996 0.004598 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -7.223 -8.469 -0.063 -4.922 IL 1 1 2 1 4 1 14 75 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 60 - u - - MR 3 2 3 5 3 1 15 74 93 -8.696 -0.015 -7.014 0.194 -0.247 -0.242 0.223 D 4 2 3 5 3 0 9 72 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 14 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 59 - c - - MR 6 5 3 8 3 1 14 73 92 -8.696 -0.015 -7.014 0.207 0.258 -0.221 -0.335 D 7 5 3 8 3 0 8 71 90 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 13 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 58 - A - - MR 9 8 3 11 3 1 13 72 91 -8.696 -0.015 -7.014 1.268 -1.815 -0.152 -1.292 D 10 8 3 11 3 0 7 70 89 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 12 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - a - - MR 12 11 3 14 3 1 12 71 90 -8.696 -0.015 -7.014 0.723 0.353 -1.369 -0.545 D 13 11 3 14 3 0 6 69 88 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 11 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - C - - MR 15 14 3 17 3 1 11 70 89 -8.696 -0.015 -7.014 -1.255 1.174 -2.112 0.128 D 16 14 3 17 3 0 5 68 87 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 55 - C - - MR 18 17 3 20 3 1 10 69 88 -8.696 -0.015 -7.014 -1.244 1.161 -2.101 0.148 D 19 17 3 20 3 0 4 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 9 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 54 - G - - MR 21 20 3 23 3 1 9 68 87 -8.696 -0.015 -7.014 -2.329 -3.650 1.848 -3.033 D 22 20 3 23 3 0 3 66 85 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 8 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 53 - G - - MR 24 23 3 26 3 1 9 67 86 -8.696 -0.015 -7.014 -2.329 -3.650 1.848 -3.033 D 25 23 3 26 3 0 2 65 84 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 7 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 52 - U - - MR 27 26 3 29 3 1 8 66 85 -8.696 -0.015 -7.014 -2.175 -2.055 -2.936 1.769 D 28 26 3 29 3 0 1 64 83 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 6 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 51 - G - - MR 30 29 3 32 3 1 7 65 84 -8.696 -0.015 -7.014 -2.329 -3.650 1.848 -3.033 D 31 29 3 32 3 0 1 63 82 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 5 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 50 - A - - MR 33 32 3 35 3 1 6 64 83 -8.696 -0.015 -7.014 1.838 -3.104 -2.665 -2.722 D 34 32 3 35 3 0 0 62 81 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 5 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 49 - C - - MR 36 35 3 38 3 1 6 63 82 -8.696 -0.015 -7.014 -2.627 1.796 -3.451 -1.869 D 37 35 3 38 3 0 0 61 80 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 4 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 48 - C - - MR 39 38 3 41 3 1 5 62 81 -8.696 -0.015 -7.014 -2.627 1.796 -3.451 -1.869 D 40 38 3 41 3 0 0 60 79 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 3 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 47 - G - - MR 42 41 3 44 3 1 4 61 80 -8.696 -0.015 -7.014 -2.329 -3.650 1.848 -3.033 D 43 41 3 44 3 0 0 59 78 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 46 - C - - MR 45 44 3 47 3 1 4 60 79 -8.696 -0.015 -7.014 -2.627 1.796 -3.451 -1.869 D 46 44 3 47 3 0 0 58 77 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 45 - A - - MR 48 47 3 50 3 1 3 59 78 -8.696 -0.015 -7.014 1.838 -3.104 -2.665 -2.722 D 49 47 3 50 3 0 0 57 76 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 44 - U - - MR 51 50 3 53 3 1 3 58 77 -8.696 -0.015 -7.014 -2.175 -2.055 -2.936 1.769 D 52 50 3 53 3 0 0 56 75 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 43 - G - - MR 54 53 3 56 3 1 2 57 76 -8.696 -0.015 -7.014 -2.329 -3.650 1.848 -3.033 D 55 53 3 56 3 0 0 55 74 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 42 - C - - MR 57 56 3 59 5 1 2 56 75 -7.414 -0.031 -7.230 -7.442 -8.334 -2.627 1.796 -3.451 -1.869 D 58 56 3 59 5 0 0 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 1 41 c g - - MP 60 59 3 64 6 2 3 55 74 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -3.879 -3.886 -3.763 -0.184 -2.706 -4.331 2.298 -3.423 -3.778 -0.018 -4.170 -1.939 1.865 -4.030 2.156 -2.668 ML 61 59 3 64 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 2 40 G C - - MP 66 65 6 70 6 2 3 53 72 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.446 -3.437 -5.648 -0.291 -6.215 -4.957 -1.404 -5.915 -4.757 3.770 -5.050 -1.173 -1.773 -4.921 -3.485 -4.514 ML 67 65 6 70 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 3 39 G C - - MP 72 71 6 76 6 2 3 51 70 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.446 -3.437 -5.648 -0.291 -6.215 -4.957 -1.404 -5.915 -4.757 3.770 -5.050 -1.173 -1.773 -4.921 -3.485 -4.514 ML 73 71 6 76 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 4 38 g u - - MP 78 77 6 82 6 2 2 49 68 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -3.914 -2.662 -4.094 2.074 -5.228 -5.794 -0.812 -4.177 -3.757 0.965 -4.313 2.988 -1.018 -4.815 -2.721 -2.784 ML 79 77 6 82 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 5 37 G C - - MP 84 83 6 88 6 2 2 47 66 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.446 -3.437 -5.648 -0.291 -6.215 -4.957 -1.404 -5.915 -4.757 3.770 -5.050 -1.173 -1.773 -4.921 -3.485 -4.514 ML 85 83 6 88 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 6 36 c g - - MP 90 89 6 94 4 2 2 45 64 -7.223 -8.469 -0.063 -4.922 -3.506 -3.541 -3.484 0.069 0.765 -4.142 2.692 -3.268 -3.495 0.190 -3.941 -1.658 1.888 -3.712 -0.340 -2.434 ML 91 89 6 94 4 1 1 44 63 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 44 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 42 61 -12.737 -14.007 -2.036 -0.404 IL 94 94 5 94 4 1 1 44 63 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 35 - a - - MR 96 95 6 98 5 1 1 43 62 -7.414 -0.031 -7.230 -7.442 -8.334 0.662 -1.037 -0.178 0.066 D 97 95 6 98 5 0 0 42 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 7 34 u a - - MP 99 98 3 103 6 2 2 42 61 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -0.045 -0.000 -2.066 1.025 -2.000 -2.904 1.407 -2.365 -2.120 1.070 -2.677 -0.486 1.926 -2.205 -0.151 -1.283 ML 100 98 3 103 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 8 33 G A - - MP 105 104 6 109 6 2 2 40 59 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -4.356 -3.440 -4.278 0.223 -3.758 -5.365 0.525 -4.000 3.322 0.142 -4.544 -0.884 -0.270 -5.030 -1.440 -3.046 ML 106 104 6 109 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 9 32 A G - - MP 111 110 6 115 4 2 2 38 57 -7.335 -7.542 -0.040 -5.956 -4.391 -3.599 3.313 0.064 -3.533 -5.162 0.739 -3.927 -4.113 -0.072 -4.536 -1.095 -0.096 -4.929 -1.227 -3.055 ML 112 110 6 115 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 10 - G - - - ML 117 116 6 119 3 1 1 35 54 -8.327 -0.016 -6.981 -2.329 -3.650 1.848 -3.033 D 118 116 6 119 3 0 0 34 53 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 11 - a - - - ML 120 119 3 122 3 1 1 34 53 -8.696 -0.015 -7.014 0.588 -0.164 -1.147 0.205 D 121 119 3 122 3 0 0 33 51 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 31 - U - - MR 123 122 3 125 3 1 1 33 52 -8.696 -0.015 -7.014 -2.175 -2.055 -2.936 1.769 D 124 122 3 125 3 0 0 31 50 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 30 - A - - MR 126 125 3 128 3 1 1 32 51 -8.696 -0.015 -7.014 1.273 -1.818 -0.163 -1.296 D 127 125 3 128 3 0 0 30 49 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 29 - u - - MR 129 128 3 131 3 1 1 31 50 -8.696 -0.015 -7.014 0.132 -0.934 -0.222 0.607 D 130 128 3 131 3 0 0 29 48 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 28 - C - - MR 132 131 3 134 3 1 1 30 49 -8.696 -0.015 -7.014 -2.627 1.796 -3.451 -1.869 D 133 131 3 134 3 0 0 29 47 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 27 - u - - MR 135 134 3 137 5 1 1 29 48 -7.414 -0.031 -7.230 -7.442 -8.334 0.162 -0.933 -0.225 0.587 D 136 134 3 137 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 12 26 g c - - MP 138 137 3 142 6 2 2 28 47 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -3.139 -2.382 0.334 1.110 -3.600 -3.986 0.492 -3.588 -3.328 2.721 -3.778 0.969 0.253 -3.236 -1.320 -2.207 ML 139 137 3 142 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 13 25 G C - - MP 144 143 6 148 6 2 2 26 45 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.446 -3.437 -5.648 -0.291 -6.215 -4.957 -1.404 -5.915 -4.757 3.770 -5.050 -1.173 -1.773 -4.921 -3.485 -4.514 ML 145 143 6 148 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 14 24 C G - - MP 150 149 6 154 6 2 2 24 43 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.356 -5.329 -4.902 -1.508 -3.468 -5.207 3.739 -4.358 -4.990 -1.357 -5.152 -3.299 -0.050 -5.368 -1.206 -3.807 ML 151 149 6 154 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 15 23 C G - - MP 156 155 6 160 6 2 2 22 41 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.356 -5.329 -4.902 -1.508 -3.468 -5.207 3.739 -4.358 -4.990 -1.357 -5.152 -3.299 -0.050 -5.368 -1.206 -3.807 ML 157 155 6 160 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 16 22 C G - - MP 162 161 6 166 6 2 2 20 39 -9.267 -9.207 -0.019 -7.983 -8.263 -8.658 -5.356 -5.329 -4.902 -1.508 -3.468 -5.207 3.739 -4.358 -4.990 -1.357 -5.152 -3.299 -0.050 -5.368 -1.206 -3.807 ML 163 161 6 166 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 17 21 c g - - MP 168 167 6 172 4 2 2 18 37 -7.335 -7.542 -0.040 -5.956 -3.034 -2.719 -3.147 0.582 -2.634 -3.802 2.075 -3.117 -3.102 0.970 -3.542 1.550 1.100 -3.271 0.992 -2.117 ML 169 167 6 172 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 18 - c - - - ML 174 173 6 176 3 1 1 14 33 -8.327 -0.016 -6.981 0.066 0.432 -1.296 0.260 D 175 173 6 176 3 0 0 14 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 19 - c - - - ML 177 176 3 179 3 1 1 13 31 -8.327 -0.542 -1.690 0.073 0.431 -1.294 0.254 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 20 - u - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -0.584 0.406 -1.346 0.691 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR208 ACC RF02806 DESC Pyrobaculum sRNA 208 LENG 60 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 05:01:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02806/CM NSEQ 4 EFFN 3.566406 CKSUM 1047413749 STATS LOCAL MSV -7.9534 0.72101 STATS LOCAL VITERBI -8.7118 0.72101 STATS LOCAL FORWARD -3.4522 0.72101 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65560 1.23454 1.11603 1.65823 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 2.79033 1.13562 2.58198 0.61295 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 2.92265 3.74471 0.10818 3.68493 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 2.92201 3.74380 0.10827 3.68370 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 1.26520 3.38816 0.44496 3.14206 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 2.92034 3.74143 0.10853 3.68048 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 2.60091 0.61176 2.41016 1.22554 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 1.28864 1.63856 1.66438 1.07650 7 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 2.55192 2.43133 0.27482 2.59782 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 0.31248 2.28454 2.48668 2.48455 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 3.20535 4.14272 0.08440 3.70850 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 0.96267 1.49228 2.23121 1.25222 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 1.44086 2.40738 0.56706 2.24397 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 2.92281 3.74493 0.10815 3.68523 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 3.73863 0.14003 3.57246 2.54093 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 3.73645 0.14016 3.57128 2.54052 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 3.73430 0.14030 3.57012 2.54011 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 2.23318 1.24477 1.12369 1.27394 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 1.34978 1.05390 2.34793 1.21551 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 1.34444 1.05459 2.34671 1.21977 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.42312 4.12713 1.11209 1.46634 0.26236 1.09861 0.40547 20 1.85299 1.07272 2.38965 0.89283 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04807 3.75209 3.75209 1.46634 0.26236 0.09357 2.41547 21 1.90272 2.07353 0.88080 1.16911 21 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.82150 3.73603 0.12041 3.50387 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 2.82295 3.73833 0.12017 3.50644 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 2.82490 3.74144 0.11984 3.50993 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 3.87407 0.12933 3.59932 2.61456 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.49415 0.80357 1.64454 1.28516 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 1.27658 2.07945 1.53460 0.96635 27 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 3.45726 0.11100 4.01626 2.89085 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.29909 2.08078 1.53205 0.95115 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 0.47239 2.77229 1.49015 2.42325 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 3.09899 2.98269 3.63177 0.13036 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 2.76928 2.82891 0.24451 2.35253 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 0.32586 2.69986 2.26159 2.23777 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 1.05804 1.53709 1.43874 1.60628 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 0.91277 2.15278 1.50473 1.34572 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 1.01633 2.57971 0.75571 2.37939 36 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.85408 0.13042 3.58962 2.61090 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 3.33732 2.17008 3.17165 0.21274 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 3.86500 0.12982 3.59493 2.61291 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 3.87385 0.12934 3.59921 2.61452 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.40160 2.75160 0.48945 2.56382 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 3.45726 0.11100 4.01626 2.89085 42 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 3.20535 4.14272 0.08440 3.70850 43 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 3.09899 2.98269 3.63177 0.13036 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 0.08992 3.74988 3.42745 3.50637 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 3.45726 0.11100 4.01626 2.89085 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 3.20535 4.14272 0.08440 3.70850 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 3.45726 0.11100 4.01626 2.89085 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.45726 0.11100 4.01626 2.89085 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 0.08992 3.74988 3.42745 3.50637 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 3.20535 4.14272 0.08440 3.70850 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 3.09899 2.98269 3.63177 0.13036 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.20535 4.14272 0.08440 3.70850 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 3.20535 4.14272 0.08440 3.70850 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 2.37189 0.53813 2.98075 1.30159 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 2.38062 0.52909 2.98997 1.31649 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 0.86077 1.10923 2.42293 1.84081 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 0.47609 2.77013 1.48175 2.42028 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 1.24864 1.17880 1.53036 1.66600 59 c - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 1.25441 1.55325 1.54775 1.23625 60 u - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //