INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR204 ACC RF02802 DESC Pyrobaculum sRNA 204 STATES 175 NODES 44 CLEN 57 W 71 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 22:52:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02802/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 3.188477 CKSUM 1245961816 NULL 0.000 0.000 0.000 0.000 GA 71.00 TC 72.70 NC 37.70 EFP7GF -11.3209 0.71929 ECMLC 0.64522 -6.15859 3.12059 1600000 477929 0.002511 ECMGC 0.38015 -19.49946 -3.55652 1600000 171479 0.002333 ECMLI 0.63670 -4.84054 4.06596 1600000 348312 0.003445 ECMGI 0.40373 -14.84933 -0.88223 1600000 112465 0.003557 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 90 -7.389 -7.596 -0.039 -6.010 IL 1 1 2 1 4 1 14 76 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 13 71 90 -8.378 -0.015 -7.032 -2.429 -3.761 1.859 -3.141 D 4 2 3 5 3 0 7 70 89 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 12 70 89 -8.378 -0.015 -7.032 1.849 -3.206 -2.758 -2.835 D 7 5 3 8 3 0 6 69 88 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 11 69 88 -8.378 -0.015 -7.032 -2.429 -3.761 1.859 -3.141 D 10 8 3 11 3 0 5 68 87 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 10 68 87 -8.745 -0.014 -7.062 -2.273 -2.137 -3.037 1.784 D 13 11 3 14 3 0 4 67 86 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - a - - MR 15 14 3 17 3 1 9 67 86 -8.745 -0.014 -7.062 0.853 -1.119 -1.281 0.403 D 16 14 3 17 3 0 3 66 84 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - U - - MR 18 17 3 20 3 1 9 66 85 -8.745 -0.014 -7.062 -0.291 -1.219 -1.670 1.286 D 19 17 3 20 3 0 2 65 83 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 56 - u - - MR 21 20 3 23 3 1 8 65 84 -8.745 -0.014 -7.062 0.363 -1.065 -1.339 0.880 D 22 20 3 23 3 0 2 64 82 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 6 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 55 - u - - MR 24 23 3 26 3 1 7 64 83 -8.745 -0.014 -7.062 -1.083 0.337 -1.882 0.995 D 25 23 3 26 3 0 2 63 81 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 5 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 54 - C - - MR 27 26 3 29 3 1 6 63 82 -8.745 -0.014 -7.062 -2.748 1.812 -3.568 -1.970 D 28 26 3 29 3 0 1 62 80 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 4 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 53 - G - - MR 30 29 3 32 3 1 6 62 81 -8.745 -0.014 -7.062 -2.429 -3.761 1.859 -3.141 D 31 29 3 32 3 0 0 61 79 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 4 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 52 - G - - MR 33 32 3 35 3 1 5 61 80 -8.745 -0.014 -7.062 -2.429 -3.761 1.859 -3.141 D 34 32 3 35 3 0 0 60 78 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 3 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 51 - C - - MR 36 35 3 38 3 1 5 60 79 -8.745 -0.014 -7.062 -2.748 1.812 -3.568 -1.970 D 37 35 3 38 3 0 0 58 77 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 3 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 50 - C - - MR 39 38 3 41 3 1 4 59 78 -8.745 -0.014 -7.062 -2.748 1.812 -3.568 -1.970 D 40 38 3 41 3 0 0 57 76 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 3 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 49 - C - - MR 42 41 3 44 3 1 4 58 77 -8.745 -0.014 -7.062 -2.748 1.812 -3.568 -1.970 D 43 41 3 44 3 0 0 56 75 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 48 - C - - MR 45 44 3 47 3 1 3 57 76 -8.745 -0.014 -7.062 -2.748 1.812 -3.568 -1.970 D 46 44 3 47 3 0 0 56 74 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 47 - u - - MR 48 47 3 50 5 1 3 56 75 -7.461 -0.030 -7.276 -7.488 -8.380 -1.081 0.347 -1.882 0.989 D 49 47 3 50 5 0 0 55 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 5 46 g c - - MP 51 50 3 55 6 2 4 55 74 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.098 -2.784 -4.170 0.758 -5.150 -5.122 -0.557 -4.434 -3.996 2.825 -4.461 2.365 -0.805 -4.407 -2.522 -2.970 ML 52 50 3 55 6 1 1 54 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 55 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 6 45 C G - - MP 57 56 6 61 6 2 4 53 72 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.471 -5.454 -4.996 -1.629 -3.544 -5.285 3.758 -4.447 -5.092 -1.489 -5.238 -3.431 -0.143 -5.476 -1.289 -3.907 ML 58 56 6 61 6 1 1 52 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 53 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 7 44 C G - - MP 63 62 6 67 6 2 4 51 70 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.471 -5.454 -4.996 -1.629 -3.544 -5.285 3.758 -4.447 -5.092 -1.489 -5.238 -3.431 -0.143 -5.476 -1.289 -3.907 ML 64 62 6 67 6 1 1 50 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 51 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 8 43 G C - - MP 69 68 6 73 6 2 3 49 68 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.543 -3.486 -5.766 -0.361 -6.348 -4.992 -1.513 -6.031 -4.812 3.783 -5.100 -1.227 -1.881 -4.982 -3.602 -4.631 ML 70 68 6 73 6 1 1 48 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 48 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 49 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 9 42 c g - - MP 75 74 6 79 6 2 3 47 66 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.118 -4.134 -3.932 -0.512 -2.806 -4.427 2.970 1.805 -3.966 -0.384 -4.311 -2.243 0.699 -4.247 -0.525 -2.867 ML 76 74 6 79 6 1 1 46 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 46 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 44 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 47 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 10 41 c g - - MP 81 80 6 85 4 2 2 45 64 -7.274 -8.519 -0.060 -4.973 -4.390 -4.416 -4.118 -0.643 -2.834 -4.549 2.996 -3.626 -4.149 -0.486 -4.458 -2.461 0.717 -4.458 2.055 -2.996 ML 82 80 6 85 4 1 1 45 63 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 44 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 42 61 -12.737 -14.007 -2.036 -0.404 IL 85 85 5 85 4 1 1 45 63 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 40 - a - - MR 87 86 6 89 5 1 1 43 62 -7.461 -0.030 -7.276 -7.488 -8.380 0.945 0.091 -1.401 -0.664 D 88 86 6 89 5 0 0 42 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 11 39 c g - - MP 90 89 3 94 6 2 2 42 61 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -1.658 -0.906 -2.115 0.967 -2.103 -2.320 1.275 -0.508 0.367 0.865 -0.444 1.028 0.998 -2.037 -0.254 -1.172 ML 91 89 3 94 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 41 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 12 38 G A - - MP 96 95 6 100 6 2 2 40 59 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.442 -3.504 -4.357 0.167 -3.833 -5.460 0.457 -4.068 3.362 0.058 -4.616 -0.935 -0.347 -5.135 -1.510 -3.115 ML 97 95 6 100 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 13 37 A G - - MP 102 101 6 106 4 2 2 38 57 -7.389 -7.596 -0.039 -6.010 -4.485 -3.669 3.354 0.001 -3.605 -5.254 0.675 -3.997 -4.191 -0.156 -4.612 -1.150 -0.171 -5.041 -1.295 -3.130 ML 103 101 6 106 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 39 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 38 56 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 41 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 14 - G - - - ML 108 107 6 110 3 1 1 35 53 -8.378 -0.015 -7.032 -2.429 -3.761 1.859 -3.141 D 109 107 6 110 3 0 0 34 53 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 15 - u - - - ML 111 110 3 113 3 1 1 34 52 -8.745 -0.014 -7.062 0.392 -0.258 -1.171 0.493 D 112 110 3 113 3 0 0 33 51 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 36 - U - - MR 114 113 3 116 3 1 1 33 51 -8.745 -0.014 -7.062 -2.273 -2.137 -3.037 1.784 D 115 113 3 116 3 0 0 31 49 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 35 - A - - MR 117 116 3 119 3 1 1 32 50 -8.745 -0.014 -7.062 1.008 -1.793 0.351 -1.237 D 118 116 3 119 3 0 0 30 48 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 34 - u - - MR 120 119 3 122 3 1 1 31 49 -8.745 -0.014 -7.062 0.062 0.133 -0.412 0.148 D 121 119 3 122 3 0 0 29 47 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 33 - C - - MR 123 122 3 125 3 1 1 30 48 -8.745 -0.014 -7.062 -2.748 1.812 -3.568 -1.970 D 124 122 3 125 3 0 0 28 46 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 32 - C - - MR 126 125 3 128 5 1 1 29 47 -7.461 -0.030 -7.276 -7.488 -8.380 -1.439 1.314 -2.308 -0.085 D 127 125 3 128 5 0 0 27 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 16 31 G C - - MP 129 128 3 133 6 2 2 28 46 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.420 -3.071 -4.479 0.270 -4.938 -4.635 -0.500 -4.846 -4.251 3.486 0.065 -0.811 -0.817 -4.237 -2.451 -3.444 ML 130 128 3 133 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 28 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 17 30 C G - - MP 135 134 6 139 6 2 2 26 44 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.471 -5.454 -4.996 -1.629 -3.544 -5.285 3.758 -4.447 -5.092 -1.489 -5.238 -3.431 -0.143 -5.476 -1.289 -3.907 ML 136 134 6 139 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 18 29 C G - - MP 141 140 6 145 6 2 2 24 42 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.471 -5.454 -4.996 -1.629 -3.544 -5.285 3.758 -4.447 -5.092 -1.489 -5.238 -3.431 -0.143 -5.476 -1.289 -3.907 ML 142 140 6 145 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 19 28 G C - - MP 147 146 6 151 6 2 2 22 40 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.543 -3.486 -5.766 -0.361 -6.348 -4.992 -1.513 -6.031 -4.812 3.783 -5.100 -1.227 -1.881 -4.982 -3.602 -4.631 ML 148 146 6 151 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 20 27 C G - - MP 153 152 6 157 6 2 2 20 38 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.471 -5.454 -4.996 -1.629 -3.544 -5.285 3.758 -4.447 -5.092 -1.489 -5.238 -3.431 -0.143 -5.476 -1.289 -3.907 ML 154 152 6 157 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 18 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 21 26 c g - - MP 159 158 6 163 4 2 2 18 36 -7.389 -2.845 -0.501 -2.753 -2.664 -2.503 -2.783 1.372 -2.558 -3.599 2.076 -2.955 -2.838 1.752 -3.359 -0.603 1.129 -2.902 -0.409 -0.003 ML 160 158 6 163 4 1 1 18 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 16 34 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 19 37 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 17 35 -1.919 -0.525 -4.619 0.000 0.000 0.000 0.000 [ MATL 40 ] 22 - c - - - ML 165 164 6 167 3 1 1 15 33 -8.184 -0.018 -6.838 -0.413 0.356 -0.376 0.261 D 166 164 6 167 3 0 0 14 32 -7.523 -0.455 -1.915 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 23 - u - - - ML 168 167 3 170 3 1 1 13 31 -8.378 -0.015 -7.032 0.010 -0.967 -0.437 0.801 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 24 - u - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -0.075 0.268 -1.327 0.534 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR204 ACC RF02802 DESC Pyrobaculum sRNA 204 LENG 57 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 22:52:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02802/CM NSEQ 5 EFFN 4.213867 CKSUM 1245961816 STATS LOCAL MSV -7.3243 0.71929 STATS LOCAL VITERBI -8.4421 0.71929 STATS LOCAL FORWARD -3.3478 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.88760 1.10833 1.10055 1.68325 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 0.00000 * 1 3.40511 4.36187 0.06813 3.91673 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 2 0.07194 3.96351 3.62478 3.73949 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 3 3.40511 4.36187 0.06813 3.91673 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 4 3.30760 3.15958 3.84493 0.10584 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 5 2.25275 3.30449 0.20637 3.10915 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 6 3.97848 0.11064 3.83511 2.74227 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 7 3.97512 0.11080 3.83322 2.74162 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 8 3.06698 3.94427 0.09038 3.88803 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 9 3.23601 0.23621 3.06482 2.08425 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 10 3.26490 0.62353 3.08256 0.96783 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 11 1.72869 1.53280 0.88593 1.63876 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 12 2.66952 2.56953 0.23616 2.74125 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 13 0.26641 2.41924 2.62332 2.62657 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 14 3.40511 4.36187 0.06813 3.91673 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 15 1.09785 1.56490 2.27847 1.03603 15 u - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 16 2.65835 3.34717 0.15550 3.25021 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 17 3.97887 0.11062 3.83533 2.74234 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 18 3.97536 0.11079 3.83335 2.74166 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 19 3.06704 3.94436 0.09037 3.88815 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 20 3.96897 0.11110 3.82975 2.74042 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 21 1.64500 1.21885 1.34772 1.37997 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.17899 4.21441 1.90310 1.46634 0.26236 1.09861 0.40547 22 1.75592 1.08593 1.63858 1.21940 22 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03475 4.07016 4.07016 1.46634 0.26236 0.18087 1.79904 23 1.39482 2.14698 1.68851 0.79742 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 24 1.46310 1.15673 2.41186 1.00972 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.18049 1.89476 4.21441 0.18620 1.77259 1.09861 0.40547 25 1.85464 1.46647 1.10448 1.26808 26 g - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 26 3.02201 3.99350 0.09513 3.74614 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 27 4.04898 0.10922 3.80117 2.75383 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 28 3.02643 4.00088 0.09454 3.75424 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 29 3.03005 4.00695 0.09405 3.76091 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 30 3.48185 0.27740 2.13895 2.36744 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 31 2.61716 0.40951 3.24361 1.49615 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 32 3.70095 0.08789 4.23908 3.10072 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 33 1.36027 1.25961 1.67062 1.30374 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 34 0.64065 2.85332 1.10215 2.48604 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 35 3.30759 3.15958 3.84493 0.10584 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 36 2.91264 2.97704 0.21010 2.47432 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 37 0.27907 2.85113 2.40014 2.35359 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 38 1.39615 1.81478 1.37564 1.08796 39 u - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 39 0.67818 1.28455 2.51928 2.00123 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 40 2.34342 3.24014 0.20305 3.02397 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 41 2.37059 3.23074 0.57558 1.18854 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 42 4.04884 0.10923 3.80110 2.75381 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 43 3.02637 4.00078 0.09454 3.75414 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 44 3.02998 4.00683 0.09406 3.76079 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 45 3.34136 0.79846 3.11045 0.75500 46 u - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 46 2.32658 1.10395 2.89632 0.66245 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 47 3.70095 0.08789 4.23908 3.10072 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 48 3.70095 0.08789 4.23908 3.10072 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 49 3.70095 0.08789 4.23908 3.10072 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 50 3.70095 0.08789 4.23908 3.10072 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 51 3.40511 4.36187 0.06813 3.91673 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 52 3.40511 4.36187 0.06813 3.91673 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 53 3.70095 0.08789 4.23908 3.10072 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 54 2.32780 1.11145 2.89692 0.65736 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 55 1.12034 2.24886 2.43670 0.73218 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 56 1.63849 2.39697 2.72520 0.43201 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 57 0.75141 2.28140 2.39319 1.09416 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.01512 4.19952 * 1.46634 0.26236 0.00000 * //