INFERNAL1/a [1.1.5 | Sep 2023] NAME Twister-P5 ACC RF02684 DESC Type-P5 twister ribozyme STATES 183 NODES 49 CLEN 58 W 148 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 06:47:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02684/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 215 EFFN 47.283859 CKSUM 64498176 NULL 0.000 0.000 0.000 0.000 GA 37.60 TC 37.60 NC 37.50 EFP7GF -13.3521 0.72758 ECMLC 0.65849 -8.77349 0.78896 1600000 651412 0.001842 ECMGC 0.37939 -20.70907 -7.28896 1600000 65054 0.006149 ECMLI 0.58944 -8.27505 1.96797 1600000 502670 0.002387 ECMGI 0.39680 -16.84727 -4.39611 1600000 55940 0.007151 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 1 1 148 236 -9.464 -19.934 -0.002 IL 1 1 2 1 3 6 27 152 241 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 5 26 149 238 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 114 4 25 148 237 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 5 120 208 -0.074 -4.403 -9.149 -9.789 [ MATP 3 ] 1 109 c g - - MP 5 4 1 9 6 2 6 120 209 -11.607 -11.546 -0.010 -7.536 -10.602 -10.997 -2.027 -3.870 -2.904 1.009 -3.765 -2.761 2.463 -4.167 -3.964 2.017 -4.527 -1.995 1.338 -4.052 -0.776 -2.548 ML 6 4 1 9 6 1 4 119 207 -8.412 -8.758 -0.206 -3.167 -8.608 -6.137 0.237 -0.635 -1.149 0.788 MR 7 4 1 9 6 1 3 118 206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 115 203 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 4 119 208 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 4 119 208 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 108 G C - - MP 11 10 6 15 6 2 4 118 207 -11.665 -11.605 -0.004 -10.381 -10.661 -11.056 -6.044 -4.648 -5.873 0.089 -6.825 -3.913 1.027 -6.504 -6.218 3.543 -6.463 -2.301 -0.434 -5.695 -3.958 -4.832 ML 12 10 6 15 6 1 3 117 205 -6.679 -7.025 -0.845 -1.434 -6.875 -4.405 -0.073 -0.438 -0.680 0.755 MR 13 10 6 15 6 1 3 116 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 114 202 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 3 117 206 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 3 117 206 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 107 C G - - MP 17 16 6 21 6 2 2 116 205 -11.672 -11.611 -0.489 -6.653 -10.667 -1.856 -6.218 -5.934 -6.194 0.456 -3.424 -6.998 3.255 -5.703 -6.063 0.320 -6.559 -3.515 1.736 -6.390 -2.511 -4.787 ML 18 16 6 21 6 1 2 115 203 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 2 114 203 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 113 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 2 116 204 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 2 116 204 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 106 A U - - MP 23 22 6 27 4 2 4 115 203 -10.190 -10.397 -0.006 -8.812 -7.170 -5.949 -7.231 3.778 -7.561 -9.181 -3.210 -7.085 -6.882 -2.588 -7.460 -3.268 0.844 -8.344 -5.157 -5.884 ML 24 22 6 27 4 1 1 114 202 -4.380 -4.562 -0.308 -3.291 -0.225 -1.168 1.022 -0.580 MR 25 22 6 27 4 1 1 113 201 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 26 22 6 27 4 0 0 113 201 -9.313 -8.994 -0.043 -5.265 IL 27 27 5 27 4 1 1 115 203 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 28 28 6 28 3 1 1 114 203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - G - - - ML 29 28 6 31 3 1 3 113 201 -11.660 -0.002 -10.314 -4.185 -7.949 1.976 -6.987 D 30 28 6 31 3 0 0 110 199 -6.174 -1.687 -0.566 IL 31 31 3 31 3 1 1 113 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 32 31 3 34 3 1 3 112 200 -8.235 -0.006 -10.314 1.993 -7.791 -7.075 -7.217 D 33 31 3 34 3 0 0 109 198 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 112 200 -1.567 -0.712 -4.267 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - G - - - ML 35 34 3 37 3 1 2 111 199 -11.660 -0.002 -10.314 -2.667 -1.421 1.441 -0.408 D 36 34 3 37 3 0 0 108 197 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 111 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - g - - - ML 38 37 3 40 3 1 2 110 198 -11.660 -0.002 -10.314 -1.807 -0.735 0.804 0.451 D 39 37 3 40 3 0 0 108 196 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 110 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - G - - - ML 41 40 3 43 3 1 1 109 197 -11.961 -0.002 -10.279 -0.676 -2.592 1.660 -4.345 D 42 40 3 43 3 0 0 107 195 -5.620 -0.734 -1.403 IL 43 43 3 43 3 1 1 109 197 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 105 - A - - MR 44 43 3 46 3 1 1 108 196 -11.961 -0.002 -10.279 1.993 -7.791 -7.075 -7.217 D 45 43 3 46 3 0 0 105 194 -6.390 -1.568 -0.620 IR 46 46 3 46 3 1 1 108 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 104 - A - - MR 47 46 3 49 3 1 1 107 195 -11.961 -0.002 -10.279 1.993 -7.791 -7.075 -7.217 D 48 46 3 49 3 0 0 104 193 -6.390 -1.568 -0.620 IR 49 49 3 49 3 1 1 107 195 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 103 - U - - MR 50 49 3 52 5 1 1 106 194 -10.609 -0.044 -6.302 -5.933 -11.528 -4.610 -3.196 -4.071 1.922 D 51 49 3 52 5 0 0 104 192 -5.352 -0.707 -2.978 -4.409 -2.404 IR 52 52 3 52 5 1 1 106 194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 102 c g - - MP 53 52 3 57 6 2 2 105 193 -11.635 -11.574 -0.010 -10.351 -7.588 -11.026 -4.000 -4.072 1.870 0.952 -3.999 -5.009 1.940 -3.412 -3.017 0.540 -1.888 1.641 -0.155 -4.302 -2.020 -3.323 ML 54 52 3 57 6 1 1 103 191 -7.142 -7.488 -0.560 -1.897 -7.338 -4.867 0.376 -0.595 -0.283 0.285 MR 55 52 3 57 6 1 1 103 191 -7.972 -6.701 -0.603 -6.680 -1.813 -4.893 -0.085 -0.449 0.542 -0.203 D 56 52 3 57 6 0 0 97 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 104 192 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 104 192 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 101 c g - - MP 59 58 6 63 6 2 2 103 191 -11.665 -11.605 -0.013 -7.929 -10.661 -7.989 -4.414 -3.413 -4.560 2.144 -4.221 -5.404 2.377 -3.205 -3.408 0.936 -5.136 0.256 1.259 -4.703 -2.099 -3.020 ML 60 58 6 63 6 1 1 100 189 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 100 189 -7.371 -6.100 -1.053 -6.078 -1.212 -4.292 0.940 -0.808 -0.547 -0.277 D 62 58 6 63 6 0 0 95 183 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 102 190 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 102 190 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 100 g c - - MP 65 64 6 69 6 2 2 101 189 -11.662 -11.601 -0.008 -10.378 -8.223 -11.053 -5.787 -4.632 -5.653 1.788 -4.030 -6.301 2.031 -6.007 -5.944 2.673 -6.266 -0.724 0.152 -5.574 -3.228 -4.535 ML 66 64 6 69 6 1 1 99 187 -6.586 -6.933 -0.923 -1.341 -6.782 -4.312 0.025 0.334 -0.668 0.129 MR 67 64 6 69 6 1 1 98 187 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 92 180 -9.477 -8.175 -3.972 -4.654 -4.672 -0.230 IL 69 69 5 69 6 1 1 100 188 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 100 188 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 99 g c - - MP 71 70 6 75 6 2 2 99 187 -11.663 -11.602 -0.004 -10.379 -10.658 -11.053 -5.802 -3.283 -5.668 1.191 -5.899 -6.320 2.390 -5.998 -5.949 2.724 -6.276 -1.647 0.143 -5.594 -2.593 -4.540 ML 72 70 6 75 6 1 1 97 185 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 96 185 -7.233 -5.962 -1.219 -5.940 -1.074 -4.153 0.180 -0.695 0.451 -0.181 D 74 70 6 75 6 0 0 89 178 -9.477 -8.175 -3.972 -4.654 -4.672 -0.230 IL 75 75 5 75 6 1 1 98 186 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 98 186 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 98 g c - - MP 77 76 6 81 6 2 2 97 185 -11.667 -11.606 -0.083 -6.365 -10.662 -4.557 -5.770 -2.482 -5.597 1.502 -6.590 -6.203 2.129 -6.236 -6.010 2.878 -6.269 -1.143 -0.824 -5.463 -3.707 -4.549 ML 78 76 6 81 6 1 1 95 184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 94 183 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 86 174 -9.477 -8.175 -3.972 -4.654 -4.672 -0.230 IL 81 81 5 81 6 1 1 96 184 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 96 184 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 97 g c - - MP 83 82 6 87 6 2 2 95 183 -11.588 -11.527 -0.192 -5.595 -10.583 -3.281 -5.588 -2.715 -5.447 0.744 -6.168 -6.074 1.762 -3.988 -5.813 2.922 -6.106 0.428 0.464 -5.339 -2.586 -3.080 ML 84 82 6 87 6 1 1 94 183 -7.170 -7.516 -0.547 -1.925 -7.366 -4.896 -0.076 0.327 -0.358 0.023 MR 85 82 6 87 6 1 1 92 180 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 79 168 -11.518 -10.217 -6.014 -6.696 -6.713 -0.053 IL 87 87 5 87 6 1 1 95 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 94 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 96 c g - - MP 89 88 6 93 6 2 2 93 182 -11.419 -11.358 -0.363 -7.491 -10.415 -2.215 -5.096 -3.390 -5.170 1.125 -2.421 -6.002 2.855 -5.019 -5.135 1.881 -5.659 -1.318 0.500 -5.316 -1.037 -2.809 ML 90 88 6 93 6 1 1 93 181 -7.558 -7.904 -0.398 -2.313 -7.754 -5.284 0.298 -0.357 0.107 -0.132 MR 91 88 6 93 6 1 1 89 178 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 76 163 -12.976 -11.674 -7.471 -8.154 -8.171 -0.019 IL 93 93 5 93 6 1 1 93 182 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 93 182 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 95 c g - - MP 95 94 6 99 4 2 2 93 181 -0.720 -3.528 -1.719 -8.711 -3.721 -3.776 -2.608 1.249 -2.692 -4.717 2.384 -4.051 -3.914 1.949 -3.862 -0.158 0.921 -4.013 -0.213 -2.990 ML 96 94 6 99 4 1 1 87 176 -2.018 -4.239 -0.805 -2.968 -0.039 -0.424 -0.643 0.714 MR 97 94 6 99 4 1 1 78 167 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 75 162 -9.530 -1.872 -0.508 -5.482 IL 99 99 5 99 4 1 1 93 181 -0.322 -2.350 -8.044 -11.782 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 81 168 -0.305 -2.395 -10.615 0.000 0.000 0.000 0.000 [ MATL 23 ] 45 - g - - - ML 101 100 6 103 3 1 1 14 32 -11.660 -0.002 -10.314 -0.270 -1.135 0.512 0.366 D 102 100 6 103 3 0 0 16 34 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 46 - a - - - ML 104 103 3 106 3 1 1 12 31 -11.660 -0.002 -10.314 0.405 0.100 -1.124 0.196 D 105 103 3 106 3 0 0 15 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 47 - a - - - ML 107 106 3 109 3 1 1 10 29 -11.660 -0.040 -5.215 0.657 -0.089 -1.074 0.012 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 48 - a - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 0.696 -0.492 -0.022 -0.546 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 114 3 1 115 3 0 2 81 148 -11.660 -0.002 -10.314 IL 115 115 2 115 3 1 1 83 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 110 - G - - - ML 116 115 2 118 3 1 2 81 148 -11.660 -0.002 -10.314 0.600 -2.273 1.163 -4.707 D 117 115 2 118 3 0 0 76 143 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 81 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 111 - C - - - ML 119 118 3 121 3 1 1 80 147 -1.930 -0.447 -7.912 -1.679 1.508 -0.640 -2.315 D 120 118 3 121 3 0 0 71 135 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 2 84 150 -0.403 -2.047 -9.270 0.000 0.000 0.000 0.000 [ MATL 31 ] 128 - A - - - ML 122 121 3 124 3 1 2 70 131 -11.655 -0.002 -10.309 1.058 -1.306 -0.231 -0.595 D 123 121 3 124 3 0 0 67 128 -6.663 -2.176 -0.379 IL 124 124 3 124 3 1 1 71 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 129 - a - - - ML 125 124 3 127 3 1 2 69 130 -11.655 -0.002 -10.309 0.550 -1.495 0.492 -0.369 D 126 124 3 127 3 0 0 66 126 -6.663 -2.176 -0.379 IL 127 127 3 127 3 1 1 70 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 130 - g - - - ML 128 127 3 130 3 1 1 68 129 -11.655 -0.480 -1.823 0.174 -0.911 0.545 -0.183 D 129 127 3 130 3 0 0 64 125 -6.663 -2.176 -0.379 IL 130 130 3 130 3 1 1 70 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 131 - a - - - ML 131 130 3 133 5 1 1 68 129 -1.086 -0.926 -9.948 -10.160 -11.052 0.228 -0.010 -0.207 -0.045 D 132 130 3 133 5 0 0 61 122 -3.867 -0.151 -8.555 -5.684 -6.843 IL 133 133 3 133 5 1 1 70 130 -0.438 -1.946 -9.641 -11.473 -10.747 0.000 0.000 0.000 0.000 [ MATP 35 ] 154 171 c g - - MP 134 133 3 138 6 2 2 27 46 -11.667 -11.607 -0.004 -10.383 -10.663 -11.058 -0.102 -4.664 -3.352 1.066 -4.328 -5.619 2.988 -4.820 -4.778 1.259 -3.857 -1.393 0.526 -4.923 -1.424 -3.792 ML 135 133 3 138 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 27 46 -7.259 -5.988 -1.184 -5.966 -1.100 -4.180 0.831 -0.712 -0.438 -0.196 D 137 133 3 138 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 155 170 C G - - MP 140 139 6 144 6 2 2 25 44 -11.672 -11.611 -0.004 -10.388 -10.667 -11.062 -6.479 -6.217 -6.415 1.356 -3.607 -7.159 3.438 -5.904 -6.300 -0.582 -6.769 -3.819 0.436 -6.633 -1.703 -5.028 ML 141 139 6 144 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 156 169 G C - - MP 146 145 6 150 4 2 2 23 42 -10.743 -10.950 -0.004 -9.364 -5.784 -3.131 -5.605 1.159 -6.732 -6.195 0.332 -6.291 -6.032 3.472 -6.280 -1.345 -0.582 -5.458 -3.808 -4.569 ML 147 145 6 150 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 157 - G - - - ML 152 151 6 154 3 1 1 21 39 -11.660 -0.002 -10.314 -6.307 -8.066 1.991 -7.066 D 153 151 6 154 3 0 0 22 40 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 158 - U - - - ML 155 154 3 157 3 1 1 20 38 -6.526 -0.017 -10.314 -6.029 -3.963 -6.799 1.968 D 156 154 3 157 3 0 0 20 38 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 22 39 -1.839 -0.562 -4.539 0.000 0.000 0.000 0.000 [ MATL 40 ] 160 - C - - - ML 158 157 3 160 3 1 1 18 37 -11.660 -0.002 -10.314 -4.471 1.672 -2.724 -0.695 D 159 157 3 160 3 0 0 20 38 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 161 - c - - - ML 161 160 3 163 3 1 1 17 36 -11.660 -0.002 -10.314 0.367 0.766 -0.506 -1.711 D 162 160 3 163 3 0 0 19 37 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 162 - C - - - ML 164 163 3 166 3 1 1 16 34 -11.660 -0.002 -10.314 -0.402 1.428 -1.452 -2.423 D 165 163 3 166 3 0 0 18 36 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 163 - A - - - ML 167 166 3 169 3 1 1 15 33 -11.660 -0.002 -10.314 1.929 -4.103 -4.252 -3.617 D 168 166 3 169 3 0 0 17 35 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 164 - A - - - ML 170 169 3 172 3 1 1 14 32 -11.660 -0.002 -10.314 1.993 -7.791 -7.075 -7.217 D 171 169 3 172 3 0 0 16 34 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 165 - G - - - ML 173 172 3 175 3 1 1 12 30 -11.660 -0.002 -10.314 -2.780 -0.562 1.543 -1.927 D 174 172 3 175 3 0 0 14 33 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 166 - C - - - ML 176 175 3 178 3 1 1 11 23 -5.405 -0.036 -10.314 -3.880 1.131 -2.271 0.618 D 177 175 3 178 3 0 0 9 21 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 12 24 -2.208 -0.414 -4.908 0.000 0.000 0.000 0.000 [ MATL 47 ] 168 - C - - - ML 179 178 3 181 2 1 1 1 1 * 0.000 -7.116 1.990 -7.578 -6.167 D 180 178 3 181 2 0 0 0 0 * 0.000 IL 181 181 3 181 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 182 181 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Twister-P5 ACC RF02684 DESC Type-P5 twister ribozyme LENG 58 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 06:47:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02684/CM NSEQ 215 EFFN 194.446793 CKSUM 64498176 STATS LOCAL MSV -8.1388 0.72758 STATS LOCAL VITERBI -9.1072 0.72758 STATS LOCAL FORWARD -2.7914 0.72758 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43636 1.30469 1.16227 1.72497 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 0.00000 * 1 1.90774 0.98238 1.29010 1.59988 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 2 3.02024 1.98530 0.26429 3.07646 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 3 2.50516 0.44627 2.65219 1.57103 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.37980 7.68340 1.15347 1.46634 0.26236 1.09861 0.40547 4 0.14261 6.17687 3.99872 2.18489 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30495 7.30495 1.46634 0.26236 0.00291 5.83970 5 4.38342 8.29967 0.01332 7.59440 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 6 0.00130 8.09559 7.56581 7.64175 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.00403 5.63897 7.68340 0.24141 1.53953 1.09861 0.40547 7 3.75689 2.37470 0.37314 1.63458 8 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 8 3.04943 1.91478 0.78821 1.04816 9 g - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 9 1.86258 3.27150 0.21797 5.94011 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.01744 7.68340 4.08450 1.46634 0.26236 1.09861 0.40547 10 0.93163 1.39238 1.12148 3.44812 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.00613 7.66690 5.17768 1.46634 0.26236 0.05326 2.95902 11 1.17754 1.05869 1.62372 1.91129 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.00490 7.67830 5.42053 1.46634 0.26236 0.15354 1.94961 12 1.49115 1.27930 0.83940 2.73825 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.00404 7.67945 5.63496 1.46634 0.26236 2.44770 0.09046 13 1.93166 1.02965 0.84323 2.69351 14 g - - < 1.38629 1.38629 1.38629 1.38629 0.00093 7.67634 7.67634 1.46634 0.26236 0.86170 0.54895 14 1.67306 1.19078 0.73689 3.51515 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.05019 7.67945 3.02641 1.46634 0.26236 2.44770 0.09046 15 2.29284 1.43561 0.57726 2.30645 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.12487 7.63024 2.14644 1.46634 0.26236 4.74897 0.00870 16 1.91789 0.71290 1.31764 2.35288 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.28370 7.50647 1.40058 1.46634 0.26236 5.87275 0.00282 17 1.83622 1.01161 1.11972 1.89329 18 c - - < 1.38629 1.38629 1.38629 1.38629 1.00167 0.45885 7.22423 1.62863 0.21840 0.00249 5.99485 18 1.63671 2.26243 0.97786 1.12342 45 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 19 1.09349 1.28355 2.25060 1.26384 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 20 0.90168 1.42485 2.20966 1.41128 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02197 7.68340 3.85068 1.46634 0.26236 1.09861 0.40547 21 0.87315 1.73468 1.37052 1.88429 48 a - - _ 1.38629 1.38629 1.38629 1.38629 1.40196 0.71132 1.33601 1.79423 0.18183 0.50986 0.91774 22 2.26533 1.31336 0.87376 1.56107 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.12460 7.37565 2.14970 1.46634 0.26236 0.46692 0.98600 23 2.58317 1.39037 0.67459 1.79506 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.01716 7.48054 4.10771 1.46634 0.26236 0.33530 1.25570 24 2.45206 0.71542 1.43600 1.67654 97 c - - > 1.38629 1.38629 1.38629 1.38629 0.00099 7.61647 7.61647 1.46634 0.26236 0.07638 2.60998 25 3.56464 0.75693 1.18676 1.62262 98 c - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.67945 7.67945 1.46634 0.26236 2.44770 0.09046 26 2.78501 0.86166 1.01064 1.88503 99 c - - > 1.38629 1.38629 1.38629 1.38629 0.00477 7.67945 5.45071 1.46634 0.26236 2.44770 0.09046 27 2.72180 0.91368 1.29023 1.35483 100 c - - > 1.38629 1.38629 1.38629 1.38629 0.00093 7.67562 7.67562 1.46634 0.26236 0.10620 2.29505 28 1.90349 2.14835 1.06984 0.93851 101 u - - > 1.38629 1.38629 1.38629 1.38629 0.01344 7.68340 4.35138 1.46634 0.26236 1.09861 0.40547 29 3.40999 2.58633 0.60350 1.06489 102 G - - > 1.38629 1.38629 1.38629 1.38629 0.00093 7.67090 7.67090 1.46634 0.26236 0.06901 2.70788 30 5.91653 3.87995 4.49237 0.03515 103 U - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 31 0.00130 8.09559 7.56581 7.64175 104 A - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 32 0.00130 8.09559 7.56581 7.64175 105 A - - - 1.38629 1.38629 1.38629 1.38629 0.39527 7.68340 1.12073 1.46634 0.26236 1.09861 0.40547 33 2.17752 5.72540 6.17081 0.12633 106 U - - > 1.38629 1.38629 1.38629 1.38629 0.00137 7.28950 7.28950 1.46634 0.26236 0.00282 5.87235 34 1.56059 2.66844 0.44942 2.49339 107 G - - > 1.38629 1.38629 1.38629 1.38629 0.00597 7.68340 5.20409 1.46634 0.26236 1.09861 0.40547 35 3.18248 0.25558 2.00950 2.99579 108 C - - > 1.38629 1.38629 1.38629 1.38629 0.05306 7.67836 2.97174 1.46634 0.26236 0.15495 1.94112 36 1.78941 1.24198 0.88747 2.02167 109 g - - > 1.38629 1.38629 1.38629 1.38629 0.00097 7.63159 7.63159 1.46634 0.26236 0.01791 4.03138 37 0.95955 2.99863 0.57027 6.37464 110 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 38 2.62185 0.32134 1.76838 3.45621 111 C - - - 1.38629 1.38629 1.38629 1.38629 0.32038 1.30858 5.54086 1.46021 0.26421 1.09861 0.40547 39 0.61034 2.39900 1.52802 1.90340 128 A - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.67993 7.67993 1.46634 0.26236 2.35338 0.09987 40 0.98218 2.56992 0.99819 1.71248 129 a - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.67993 7.67993 1.46634 0.26236 2.35338 0.09987 41 1.27388 2.07024 0.95542 1.56327 130 g - - - 1.38629 1.38629 1.38629 1.38629 0.31515 7.67993 1.30987 1.46634 0.26236 2.35338 0.09987 42 1.23633 1.35273 1.50338 1.47560 131 a - - - 1.38629 1.38629 1.38629 1.38629 0.71876 0.66941 7.36605 1.37343 0.29201 0.01617 4.13273 43 1.60285 0.61267 1.75278 2.48307 154 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.67993 7.67993 1.46634 0.26236 0.21084 1.66023 44 1.79903 0.32561 3.45011 2.51688 155 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 45 1.97669 2.56297 0.29283 3.26359 156 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 46 7.07413 8.30275 0.00160 7.60083 157 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 47 7.57108 4.38315 8.16333 0.01338 158 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01184 4.48207 7.68340 0.07952 2.57128 1.09861 0.40547 48 6.09826 0.21330 3.29469 1.87891 160 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 49 1.12742 0.79754 1.73295 3.01726 161 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 50 1.65526 0.36799 2.38433 3.70178 162 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 51 0.03644 4.58700 4.69508 4.10679 163 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 52 0.00130 8.09559 7.56581 7.64175 164 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 53 3.83510 1.72082 0.30152 2.81689 165 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 54 5.50393 0.58632 2.99313 0.94307 166 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02521 3.71192 7.68340 0.03727 3.30804 1.09861 0.40547 55 8.03288 0.00129 8.43967 7.19579 168 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 56 3.30273 0.30612 2.54634 1.90683 169 C - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 57 2.62947 3.47009 0.31436 1.79269 170 G - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 58 1.98241 1.89553 0.57664 1.89552 171 G - - > 1.38629 1.38629 1.38629 1.38629 0.00046 7.68294 * 1.46634 0.26236 0.00000 * //