INFERNAL1/a [1.1.5 | Sep 2023] NAME Pistol ACC RF02679 DESC Pistol ribozyme STATES 218 NODES 61 CLEN 68 W 116 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 14:35:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/3D_families/3D_release15/RF02679/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 47 EFFN 9.004700 CKSUM 2549510344 NULL 0.000 0.000 0.000 0.000 GA 34.50 TC 34.70 NC 33.80 EFP7GF -17.0198 0.72007 ECMLC 0.59949 -9.92527 0.61577 1600000 666214 0.001801 ECMGC 0.42133 -17.29827 -5.83371 1600000 50102 0.007984 ECMLI 0.52743 -9.66140 1.92096 1600000 539815 0.002223 ECMGI 0.42094 -14.15516 -2.86303 1600000 46387 0.008623 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 116 173 -7.141 -17.610 -0.010 IL 1 1 2 1 3 5 30 121 178 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 5 30 118 175 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 54 4 28 116 173 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 29 47 -0.022 -7.844 -7.251 -7.892 [ MATP 3 ] 1 16 a u - - MP 5 4 1 9 6 2 2 29 47 -9.929 -9.868 -0.012 -8.644 -8.924 -9.319 -1.170 -2.316 -1.302 2.621 -2.470 -3.272 0.970 -2.792 -2.516 1.240 -1.539 -0.258 0.660 -2.557 -0.666 -1.671 ML 6 4 1 9 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 15 c g - - MP 11 10 6 15 6 2 2 27 45 -9.929 -9.868 -0.012 -8.644 -8.924 -9.319 -4.104 -3.747 -4.121 1.045 -3.371 -4.912 2.694 -3.927 -4.102 1.917 -4.591 -1.495 0.945 -4.252 -0.437 -2.903 ML 12 10 6 15 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 14 U A - - MP 17 16 6 21 6 2 2 25 43 -9.929 -9.868 -0.012 -8.644 -8.924 -9.319 -5.407 -5.264 -5.150 0.598 -3.849 -5.646 1.218 -4.614 -5.131 -1.195 -5.467 -3.064 3.446 -5.506 -1.478 -3.936 ML 18 16 6 21 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 13 C G - - MP 23 22 6 27 4 2 2 23 41 -8.537 -8.744 -0.017 -7.159 -5.646 -5.404 -5.321 -1.491 -3.977 -5.779 3.526 -4.747 -5.304 1.368 -5.608 -3.142 -0.339 -5.730 -1.608 -4.101 ML 24 22 6 27 4 1 1 25 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 26 22 6 27 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 27 27 5 27 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 28 28 6 28 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - G - - - ML 29 28 6 31 3 1 1 20 39 -9.483 -0.007 -8.137 -4.124 -5.639 1.959 -4.857 D 30 28 6 31 3 0 0 20 38 -6.174 -1.687 -0.566 IL 31 31 3 31 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - U - - - ML 32 31 3 34 3 1 1 19 37 -9.483 -0.007 -8.137 0.044 -1.752 -1.444 1.205 D 33 31 3 34 3 0 0 19 37 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - C - - - ML 35 34 3 37 3 1 1 18 36 -9.483 -0.007 -8.137 -1.715 1.056 -1.784 0.407 D 36 34 3 37 3 0 0 18 36 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - u - - - ML 38 37 3 40 3 1 1 16 35 -9.483 -0.007 -8.137 -0.040 -1.018 -0.418 0.836 D 39 37 3 40 3 0 0 17 35 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - g - - - ML 41 40 3 43 3 1 1 15 34 -9.483 -0.007 -8.137 0.157 -0.319 0.611 -0.847 D 42 40 3 43 3 0 0 16 34 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - g - - - ML 44 43 3 46 3 1 1 14 32 -9.483 -0.007 -8.137 0.653 -1.600 0.870 -1.890 D 45 43 3 46 3 0 0 15 33 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - G - - - ML 47 46 3 49 3 1 1 12 30 -9.483 -0.007 -8.137 -0.909 -2.414 1.637 -2.554 D 48 46 3 49 3 0 0 13 32 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - C - - - ML 50 49 3 52 2 1 1 1 1 * 0.000 -4.701 1.950 -5.272 -3.779 D 51 49 3 52 2 0 0 0 0 * 0.000 IL 52 52 3 52 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 15 ] - - - - - - E 53 52 3 -1 0 0 0 0 0 [ BEGR 16 ] - - - - - - S 54 3 1 55 3 0 15 100 157 -9.483 -0.007 -8.137 IL 55 55 2 55 3 1 14 102 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 56 55 2 58 3 1 15 100 157 -9.483 -0.007 -8.137 1.194 -0.976 -1.207 -0.377 D 57 55 2 58 3 0 9 98 155 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 13 101 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 59 58 3 61 3 1 14 99 156 -9.483 -0.007 -8.137 -0.763 -1.792 -2.811 1.575 D 60 58 3 61 3 0 9 97 154 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 12 100 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 62 61 3 64 3 1 14 98 155 -9.483 -0.007 -8.137 1.961 -5.110 -4.554 -4.816 D 63 61 3 64 3 0 8 96 153 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 12 99 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 65 64 3 67 3 1 13 97 154 -9.483 -0.007 -8.137 1.961 -5.110 -4.554 -4.816 D 66 64 3 67 3 0 8 95 152 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 11 98 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 68 67 3 70 3 1 12 96 153 -9.483 -0.007 -8.137 1.875 -2.711 -3.543 -3.430 D 69 67 3 70 3 0 7 94 151 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 11 97 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - u - - - ML 71 70 3 73 3 1 11 95 152 -9.483 -0.047 -5.033 -0.916 0.685 -2.452 0.748 D 72 70 3 73 3 0 7 93 150 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 10 96 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 74 73 3 76 5 1 11 94 151 -2.139 -0.412 -5.891 -8.478 -9.369 1.959 -5.050 -4.497 -4.760 D 75 73 3 76 5 0 6 93 149 -5.448 -0.524 -4.709 -3.084 -2.996 IL 76 76 3 76 5 1 10 94 151 -2.571 -0.658 -2.451 -7.462 -6.735 0.000 0.000 0.000 0.000 [ MATP 24 ] 26 89 c g - - MP 77 76 3 81 6 2 13 93 150 -9.848 -9.787 -0.013 -8.564 -8.844 -9.239 -1.089 -2.072 -2.101 0.795 -1.679 -2.936 1.395 -2.438 1.378 1.009 -0.515 0.194 1.144 -2.237 -0.323 -1.359 ML 78 76 3 81 6 1 8 90 147 -7.436 -7.782 -2.497 -0.359 -7.632 -5.162 -0.151 0.126 -0.564 0.413 MR 79 76 3 81 6 1 7 91 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 3 81 6 0 4 87 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 8 92 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 9 92 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 27 88 g c - - MP 83 82 6 87 6 2 12 91 148 -9.848 -9.787 -0.013 -8.564 -8.844 -9.239 -2.181 -0.966 -1.582 1.394 -2.394 -3.181 1.356 -2.719 -2.443 1.842 -2.993 0.733 1.174 -1.716 -0.245 -1.592 ML 84 82 6 87 6 1 8 89 146 -7.436 -7.782 -2.497 -0.359 -7.632 -5.162 -0.442 -0.296 -1.148 0.999 MR 85 82 6 87 6 1 7 89 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 4 86 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 8 90 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 8 90 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 28 87 C G - - MP 89 88 6 93 6 2 10 89 146 -9.848 -9.787 -0.013 -8.564 -8.844 -9.239 -4.449 -4.239 -4.419 0.943 -3.352 -5.171 3.126 -4.012 -4.334 0.280 -4.811 -1.942 1.467 -4.632 -0.896 -3.120 ML 90 88 6 93 6 1 7 87 144 -7.436 -7.782 -2.497 -0.359 -7.632 -5.162 0.117 -0.652 -0.049 0.392 MR 91 88 6 93 6 1 6 87 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 3 85 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 7 88 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 7 88 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 29 86 a u - - MP 95 94 6 99 4 2 8 87 144 -8.412 -8.619 -0.019 -7.033 -3.186 -2.981 -3.287 2.129 -3.026 -4.094 1.481 -3.438 -3.352 1.739 -3.867 -1.027 1.646 -3.391 -0.535 -1.679 ML 96 94 6 99 4 1 6 86 143 -4.722 -4.904 -0.238 -3.634 -0.158 -0.653 -0.068 0.598 MR 97 94 6 99 4 1 4 85 142 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 3 84 141 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 7 87 144 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 7 87 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - U - - - ML 101 100 6 103 3 1 6 85 142 -3.958 -0.101 -8.137 -2.183 -2.511 -2.560 1.780 D 102 100 6 103 3 0 3 83 140 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 6 85 142 -1.947 -0.513 -4.647 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - U - - - ML 104 103 3 106 3 1 5 84 141 -9.483 -0.007 -8.137 -3.071 -1.752 -3.810 1.813 D 105 103 3 106 3 0 2 82 139 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 5 85 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 107 106 3 109 3 1 5 83 140 -9.483 -0.007 -8.137 1.904 -3.993 -3.865 -2.995 D 108 106 3 109 3 0 2 81 138 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 5 84 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - g - - - ML 110 109 3 112 3 1 4 82 139 -9.811 -0.127 -3.589 0.878 -3.335 0.949 -2.910 D 111 109 3 112 3 0 2 81 138 -5.620 -0.734 -1.403 IL 112 112 3 112 3 1 4 83 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 85 - U - - MR 113 112 3 115 3 1 3 81 138 -9.691 -0.007 -8.009 -1.602 -2.314 -2.487 1.719 D 114 112 3 115 3 0 1 79 136 -7.885 -3.062 -0.191 IR 115 115 3 115 3 1 3 82 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 84 - G - - MR 116 115 3 118 2 1 2 80 137 -9.922 -0.001 -1.515 -4.047 1.808 -3.522 D 117 115 3 118 2 0 1 79 136 -5.967 -0.023 IR 118 118 3 118 2 1 2 81 138 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 34 ] - - - - - - B 119 118 3 120 149 0 1 79 136 [ BEGL 35 ] - - - - - - S 120 119 1 121 4 0 0 22 41 -0.035 -6.242 -7.251 -7.892 [ MATP 36 ] 35 44 G C - - MP 121 120 1 125 4 2 2 22 40 -8.520 -8.727 -0.018 -7.142 -7.334 -4.431 -8.348 -1.711 -8.682 -5.708 -3.393 -8.338 -5.782 3.923 -6.010 -2.293 -3.756 -6.072 -5.678 -7.197 ML 122 120 1 125 4 1 1 24 42 -3.939 -4.121 -0.437 -2.851 0.213 -0.662 0.392 -0.158 MR 123 120 1 125 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 124 120 1 125 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 125 125 5 125 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 126 126 6 126 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - C - - - ML 127 126 6 129 3 1 1 19 38 -9.483 -0.007 -8.137 -2.706 1.690 -2.788 -1.076 D 128 126 6 129 3 0 0 19 38 -6.174 -1.687 -0.566 IL 129 129 3 129 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - c - - - ML 130 129 3 132 3 1 1 18 36 -9.483 -0.024 -6.059 -1.622 0.835 -1.650 0.654 D 131 129 3 132 3 0 0 18 36 -6.174 -1.687 -0.566 IL 132 132 3 132 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - c - - - ML 133 132 3 135 3 1 1 17 35 -9.467 -0.007 -8.121 -0.812 0.468 -0.302 0.305 D 134 132 3 135 3 0 0 17 35 -6.556 -2.069 -0.413 IL 135 135 3 135 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - a - - - ML 136 135 3 138 3 1 1 16 34 -9.467 -0.007 -8.121 0.863 -0.371 -1.120 -0.078 D 137 135 3 138 3 0 0 15 34 -6.556 -2.069 -0.413 IL 138 138 3 138 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - G - - - ML 139 138 3 141 3 1 1 15 32 -6.132 -0.026 -8.121 0.378 -1.699 1.095 -1.966 D 140 138 3 141 3 0 0 14 32 -6.556 -2.069 -0.413 IL 141 141 3 141 3 1 1 17 35 -1.559 -0.717 -4.259 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 142 141 3 144 3 1 1 12 30 -9.467 -0.007 -8.121 1.399 -1.453 -2.244 -0.345 D 143 141 3 144 3 0 0 13 31 -6.556 -2.069 -0.413 IL 144 144 3 144 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 145 144 3 147 2 1 1 1 1 * 0.000 -4.103 -5.615 1.958 -4.837 D 146 144 3 147 2 0 0 0 0 * 0.000 IL 147 147 3 147 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 148 147 3 -1 0 0 0 0 0 [ BEGR 45 ] - - - - - - S 149 119 1 150 3 0 0 70 127 -9.483 -0.024 -6.059 IL 150 150 2 150 3 1 1 72 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - G - - - ML 151 150 2 153 5 1 1 70 127 -8.472 -0.117 -3.825 -8.499 -9.391 -4.103 -5.615 1.958 -4.837 D 152 150 2 153 5 0 0 68 125 -5.187 -1.031 -4.448 -2.823 -1.757 IL 153 153 3 153 5 1 1 70 127 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 46 83 U G - - MP 154 153 3 158 6 2 2 69 126 -9.848 -9.787 -0.013 -8.564 -8.844 -9.239 -5.504 -5.075 -5.222 -0.302 -4.050 -5.768 0.625 -4.738 -5.193 1.018 -5.518 -2.750 -0.511 -5.691 3.385 -4.041 ML 155 153 3 158 6 1 1 67 123 -7.318 -7.664 -1.754 -0.607 -7.514 -5.043 -0.120 -0.762 0.421 0.204 MR 156 153 3 158 6 1 1 67 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 3 158 6 0 0 62 119 -9.345 -8.044 -3.841 -4.523 -4.540 -0.254 IL 158 158 5 158 6 1 1 69 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 68 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 47 82 c g - - MP 160 159 6 164 6 2 2 67 124 -9.862 -9.801 -0.012 -8.578 -8.858 -9.253 -4.527 -4.351 -4.479 -0.328 -3.377 -5.199 2.674 -4.057 -4.402 0.533 -4.866 -2.075 2.510 -4.698 -0.167 -3.189 ML 161 159 6 164 6 1 1 64 121 -7.159 -7.505 -2.220 -0.448 -7.355 -4.885 0.839 -0.454 -0.742 -0.178 MR 162 159 6 164 6 1 1 65 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 60 117 -9.345 -8.044 -3.841 -4.523 -4.540 -0.254 IL 164 164 5 164 6 1 1 67 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 66 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 81 c g - - MP 166 165 6 170 6 2 2 65 122 -9.862 -9.801 -0.012 -8.578 -8.858 -9.253 -3.750 -3.633 -3.827 1.346 -3.073 -4.660 2.603 -3.645 -3.778 1.102 -4.306 -1.513 1.468 -3.989 0.391 -2.659 ML 167 165 6 170 6 1 1 62 119 -7.159 -7.505 -2.220 -0.448 -7.355 -4.885 -0.008 -0.098 0.122 -0.025 MR 168 165 6 170 6 1 1 63 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 169 165 6 170 6 0 0 58 115 -9.345 -8.044 -3.841 -4.523 -4.540 -0.254 IL 170 170 5 170 6 1 1 65 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 171 171 6 171 5 1 1 64 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 80 c g - - MP 172 171 6 176 6 2 2 63 120 -9.862 -9.801 -0.012 -8.578 -8.858 -9.253 -4.128 -3.892 -4.154 1.042 -3.245 -4.968 2.879 -3.852 -4.081 1.226 -4.588 -1.625 1.418 -4.327 -0.792 -2.888 ML 173 171 6 176 6 1 1 60 117 -7.159 -7.505 -2.220 -0.673 -7.355 -2.840 0.502 -0.292 -0.708 0.208 MR 174 171 6 176 6 1 1 61 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 175 171 6 176 6 0 0 56 113 -9.345 -8.044 -3.841 -4.523 -4.540 -0.254 IL 176 176 5 176 6 1 1 63 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 177 177 6 177 5 1 1 62 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 79 g c - - MP 178 177 6 182 6 2 2 61 118 -9.862 -9.801 -0.035 -8.578 -8.858 -5.859 -3.620 -1.344 -3.643 1.188 -3.540 -4.395 2.160 -3.854 -3.779 2.419 -4.231 -0.871 0.841 -3.683 -1.175 -2.617 ML 179 177 6 182 6 1 1 58 115 -6.998 -7.344 -2.058 -0.773 -7.194 -2.702 0.033 -0.360 0.314 -0.067 MR 180 177 6 182 6 1 1 59 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 6 182 6 0 0 53 110 -9.616 -8.314 -4.111 -4.793 -4.811 -0.208 IL 182 182 5 182 6 1 1 61 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 60 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 78 g c - - MP 184 183 6 188 6 2 2 59 116 -9.839 -9.779 -0.129 -8.555 -8.835 -3.666 -3.691 -3.199 -3.720 1.025 -3.384 -4.491 2.042 -3.794 -3.802 2.344 -4.273 -0.361 1.323 -3.788 -0.608 -2.634 ML 185 183 6 188 6 1 1 57 114 -6.820 -7.166 -1.881 -0.595 -7.016 -4.546 -0.155 0.604 -0.865 0.047 MR 186 183 6 188 6 1 1 57 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 50 107 -10.170 -8.868 -4.665 -5.347 -5.364 -0.138 IL 188 188 5 188 6 1 1 59 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 59 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 77 c g - - MP 190 189 6 194 6 2 2 58 115 -9.724 -9.663 -0.272 -8.439 -5.845 -2.743 -3.501 -3.285 -3.575 1.268 -3.011 -4.389 2.260 -3.521 -3.579 1.857 -4.094 -1.193 1.501 -3.703 -0.030 -2.474 ML 191 189 6 194 6 1 1 55 112 -6.820 -7.166 -1.881 -0.595 -7.016 -4.546 1.046 -0.915 -0.660 -0.374 MR 192 189 6 194 6 1 1 54 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 45 102 -11.168 -9.866 -5.663 -6.345 -6.362 -0.067 IL 194 194 5 194 6 1 1 57 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 57 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 76 g c - - MP 196 195 6 200 4 2 2 56 113 -0.587 -7.957 -1.771 -4.746 -2.194 -1.014 -2.358 1.066 -2.303 -3.177 1.788 -2.659 -2.430 1.873 -2.075 -0.143 1.401 -2.474 -0.127 -1.546 ML 197 195 6 200 4 1 1 51 108 -2.431 -4.385 -0.951 -2.002 -0.048 -0.951 0.807 -0.385 MR 198 195 6 200 4 1 1 45 102 -5.195 -4.224 -1.091 -1.152 -0.037 -0.423 -0.641 0.712 D 199 195 6 200 4 0 0 39 96 -7.514 -7.195 -0.406 -2.102 IL 200 200 5 200 4 1 1 56 112 -0.467 -2.036 -5.541 -6.476 0.000 0.000 0.000 0.000 IR 201 201 6 201 3 1 1 32 69 -3.242 -1.030 -1.306 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - u - - - ML 202 201 6 204 3 1 1 31 68 -8.953 -0.010 -7.607 0.337 -0.709 -0.746 0.613 D 203 201 6 204 3 0 0 32 69 -9.367 -2.089 -0.390 IL 204 204 3 204 3 1 1 32 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 66 - U - - - ML 205 204 3 207 3 1 1 30 67 -9.091 -0.057 -4.767 -0.557 -0.509 -1.563 1.189 D 206 204 3 207 3 0 0 32 69 -9.043 -4.556 -0.066 IL 207 207 3 207 3 1 1 31 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 67 - c - - - ML 208 207 3 210 3 1 1 28 65 -9.044 -0.110 -3.812 0.289 0.420 -0.955 -0.113 D 209 207 3 210 3 0 0 32 69 -9.165 -4.678 -0.060 IL 210 210 3 210 3 1 1 30 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 68 - u - - - ML 211 210 3 213 3 1 1 22 59 -8.945 -0.688 -1.407 0.297 -0.857 -0.081 0.349 D 212 210 3 213 3 0 0 32 69 -1.095 -4.897 -1.004 IL 213 213 3 213 3 1 1 34 71 -0.718 -1.399 -6.271 0.000 0.000 0.000 0.000 [ MATL 59 ] 74 - u - - - ML 214 213 3 216 2 1 1 1 1 * 0.000 -0.100 -0.334 -0.995 0.826 D 215 213 3 216 2 0 0 0 0 * 0.000 IL 216 216 3 216 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 217 216 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Pistol ACC RF02679 DESC Pistol ribozyme LENG 68 MAXL 130 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 14:35:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/3D_families/3D_release15/RF02679/CM NSEQ 47 EFFN 41.414734 CKSUM 2549510344 STATS LOCAL MSV -8.5247 0.72007 STATS LOCAL VITERBI -8.6866 0.72007 STATS LOCAL FORWARD -4.0884 0.72007 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38193 1.50521 1.24093 1.43623 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 0.00000 * 1 0.22870 3.20780 1.85218 4.94819 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 2 2.05388 0.69403 1.29946 2.30734 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 3 2.36997 2.44943 5.45966 0.20344 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 4 5.47852 0.21327 1.75103 4.24821 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 5 5.64049 6.85514 0.00673 6.16594 5 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 6 1.34739 3.96035 2.82974 0.41249 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 7 3.94848 0.53493 2.83590 1.08964 7 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 8 1.52566 2.46955 1.65335 0.68025 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 9 1.30672 1.51578 0.81161 2.72554 9 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 10 0.86372 2.74665 0.68582 4.54798 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 11 2.15192 3.38191 0.17772 4.37541 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 12 6.17255 0.00762 6.48923 5.52555 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 13 4.54786 1.75573 0.20919 5.22312 13 G - - > 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 14 0.20832 5.61779 2.40977 2.35828 14 A - - > 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 15 2.70942 1.32019 0.63278 2.00081 15 G - - > 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 16 3.13933 2.59271 2.18446 0.26223 16 U - - > 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 17 0.42480 2.25491 2.51351 1.83115 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 18 1.92145 3.21684 4.85718 0.21598 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 19 0.00528 6.65825 6.16942 6.27189 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 20 0.00528 6.65825 6.16942 6.27189 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 21 0.04236 3.44407 5.42793 5.26823 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 22 2.34703 0.80700 4.59329 0.80289 22 u - - - 1.38629 1.38629 1.38629 1.38629 0.03622 6.19848 3.39517 1.46634 0.26236 1.09861 0.40547 23 0.00544 6.62569 6.13894 6.24255 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.32335 1.29396 6.16647 0.18454 1.78073 0.11442 2.22457 24 2.47719 1.76681 0.48915 2.02497 26 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 25 1.47678 1.85346 0.96834 1.44723 27 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 26 2.02501 0.44726 2.79639 1.78616 28 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 27 0.98398 1.97696 1.57683 1.26919 29 a - - ( 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 28 3.43774 4.32818 3.40582 0.08176 30 U - - , 1.38629 1.38629 1.38629 1.38629 0.07925 2.60155 6.19848 0.05394 2.94670 1.09861 0.40547 29 5.00891 2.78150 5.51997 0.07540 32 U - - , 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 30 0.03206 5.75287 5.69559 3.68826 33 A - - , 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 31 0.74283 5.59890 0.66106 5.46551 34 G - - , 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 32 4.68426 5.67629 0.01678 5.52894 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 33 4.75474 0.13945 3.53339 2.38224 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00407 6.19848 6.19848 1.46634 0.26236 1.09861 0.40547 34 3.93526 0.68979 2.74510 0.88059 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 35 2.68229 0.90182 1.50206 1.19372 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 36 0.66262 1.63627 2.49345 1.57420 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 37 1.07448 2.81184 0.53462 4.37889 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01903 4.08672 6.18528 0.22946 1.58457 1.09861 0.40547 38 0.30094 2.80999 4.48286 1.66933 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 39 5.62820 6.84232 0.00681 6.15353 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 40 6.05732 0.01512 5.94633 4.59991 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 41 5.62820 6.84232 0.00681 6.15353 45 G - - , 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 42 3.07532 3.10460 1.84684 0.28602 46 U - - < 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 43 3.03234 0.85180 2.67173 0.78522 47 u - - < 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 44 1.69084 0.81683 1.93181 1.47438 48 c - - < 1.38629 1.38629 1.38629 1.38629 0.00413 6.18528 6.18528 1.46634 0.26236 1.09861 0.40547 45 1.91519 0.58542 1.93277 1.89004 49 C - - < 1.38629 1.38629 1.38629 1.38629 0.01903 6.18528 4.08672 1.46634 0.26236 1.09861 0.40547 46 1.78899 1.04881 0.94544 2.36437 50 g - - < 1.38629 1.38629 1.38629 1.38629 0.04618 6.17043 3.14560 1.46634 0.26236 2.31791 0.10367 47 2.18655 1.18532 0.90645 1.72545 51 g - - < 1.38629 1.38629 1.38629 1.38629 0.14812 6.12862 1.99884 1.46634 0.26236 3.39266 0.03420 48 1.69327 1.09416 1.33378 1.52426 52 c - - < 1.38629 1.38629 1.38629 1.38629 0.36518 5.98554 1.19267 1.46634 0.26236 4.50986 0.01106 49 1.87505 1.35446 1.00838 1.49721 53 g - - < 1.38629 1.38629 1.38629 1.38629 1.79948 0.26077 2.74642 1.24949 0.33779 0.14678 1.99129 50 1.10896 2.13561 2.06585 0.85516 65 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24271 6.09124 1.54534 1.46634 0.26236 1.64251 0.21504 51 2.02944 1.82922 3.00998 0.41740 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04503 5.87700 3.18866 1.46634 0.26236 4.88138 0.00762 52 1.16128 0.89425 2.28533 1.73579 67 c - - _ 1.38629 1.38629 1.38629 1.38629 0.06279 5.83782 2.84830 1.46634 0.26236 0.53591 0.87980 53 1.17068 2.33237 1.34020 1.10568 68 u - - _ 1.38629 1.38629 1.38629 1.38629 0.50539 1.56761 1.67032 0.85588 0.55323 1.66512 0.20969 54 1.56970 1.67027 2.33154 0.68013 74 U - - _ 1.38629 1.38629 1.38629 1.38629 1.21651 0.96943 1.12566 0.01514 4.19782 1.33375 0.30583 55 1.70524 1.14746 1.14463 1.70107 76 g - - > 1.38629 1.38629 1.38629 1.38629 0.00739 5.60422 5.60422 1.46634 0.26236 0.68275 0.70366 56 1.80454 1.34375 0.92105 1.73453 77 g - - > 1.38629 1.38629 1.38629 1.38629 0.00527 5.94068 5.94068 1.46634 0.26236 0.55563 0.85264 57 1.89509 0.99081 1.13626 1.84896 78 c - - > 1.38629 1.38629 1.38629 1.38629 0.00454 6.08986 6.08986 1.46634 0.26236 1.24509 0.33956 58 2.49657 0.90281 1.00941 1.91211 79 c - - > 1.38629 1.38629 1.38629 1.38629 0.00442 6.11798 6.11798 1.46634 0.26236 3.54396 0.02932 59 2.01527 1.95844 0.53550 1.96427 80 G - - > 1.38629 1.38629 1.38629 1.38629 0.00442 6.11798 6.11798 1.46634 0.26236 3.54396 0.02932 60 1.94787 2.08745 0.61640 1.64229 81 G - - > 1.38629 1.38629 1.38629 1.38629 0.00442 6.11798 6.11798 1.46634 0.26236 3.54396 0.02932 61 0.83649 2.72721 0.72192 4.16375 82 g - - > 1.38629 1.38629 1.38629 1.38629 0.02194 6.11798 3.93742 1.46634 0.26236 3.54396 0.02932 62 4.57996 2.06390 0.19516 3.21677 83 G - - > 1.38629 1.38629 1.38629 1.38629 0.00449 6.10053 6.10053 1.46634 0.26236 3.74844 0.02384 63 2.51311 5.99856 0.09152 5.53091 84 G - - , 1.38629 1.38629 1.38629 1.38629 0.00449 6.10053 6.10053 1.46634 0.26236 3.74844 0.02384 64 2.75650 4.22906 3.50365 0.11448 85 U - - , 1.38629 1.38629 1.38629 1.38629 0.00449 6.10053 6.10053 1.46634 0.26236 3.74844 0.02384 65 1.49832 1.64249 1.78574 0.87870 86 u - - ) 1.38629 1.38629 1.38629 1.38629 0.00449 6.10053 6.10053 1.46634 0.26236 3.74844 0.02384 66 1.94397 3.24204 0.37060 2.05996 87 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00449 6.10053 6.10053 1.46634 0.26236 3.74844 0.02384 67 1.98304 1.15379 1.55394 1.09214 88 u - - ) 1.38629 1.38629 1.38629 1.38629 0.00449 6.10053 6.10053 1.46634 0.26236 3.74844 0.02384 68 0.67699 2.18691 1.42661 1.96991 89 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00225 6.09828 * 1.46634 0.26236 0.00000 * //