INFERNAL1/a [1.1.5 | Sep 2023] NAME RcsR1 ACC RF02552 DESC RcsR1 sRNA STATES 302 NODES 78 CLEN 96 W 116 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 02:57:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02552/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 1.000977 CKSUM 472963926 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.60 NC 56.80 EFP7GF -7.4770 0.71880 ECMLC 0.67876 -7.94252 0.45844 1600000 359434 0.003339 ECMGC 0.41403 -14.04540 -3.77076 1600000 28156 0.014207 ECMLI 0.58401 -6.71092 2.38213 1600000 242922 0.004940 ECMGI 0.45456 -8.70395 0.63526 1600000 27909 0.014332 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 116 138 -6.506 -6.713 -0.073 -5.127 IL 1 1 2 1 4 13 45 119 142 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 45 118 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 13 45 116 138 -7.559 -0.027 -6.213 1.474 -1.583 -1.292 -1.058 D 4 2 3 5 3 9 40 114 136 -6.174 -1.687 -0.566 IL 5 5 3 5 3 12 44 117 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 13 44 115 137 -7.559 -0.027 -6.213 -0.830 1.244 -1.602 -0.436 D 7 5 3 8 3 9 39 113 135 -6.174 -1.687 -0.566 IL 8 8 3 8 3 12 43 116 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 13 43 114 136 -7.559 -0.027 -6.213 1.474 -1.583 -1.292 -1.058 D 10 8 3 11 3 8 39 112 134 -6.174 -1.687 -0.566 IL 11 11 3 11 3 12 43 115 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 12 42 113 135 -7.559 -0.027 -6.213 -0.784 -0.915 -1.468 1.337 D 13 11 3 14 3 8 38 111 133 -6.174 -1.687 -0.566 IL 14 14 3 14 3 11 42 114 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 12 41 112 134 -7.559 -0.027 -6.213 -0.569 -0.508 -1.274 1.143 D 16 14 3 17 3 8 37 110 132 -6.174 -1.687 -0.566 IL 17 17 3 17 3 11 41 113 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 11 40 111 133 -7.559 -0.027 -6.213 -0.215 -0.898 0.621 0.089 D 19 17 3 20 3 7 37 109 131 -6.174 -1.687 -0.566 IL 20 20 3 20 3 10 40 112 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 11 39 110 132 -7.559 -0.027 -6.213 -0.830 1.244 -1.602 -0.436 D 22 20 3 23 3 7 36 108 130 -6.174 -1.687 -0.566 IL 23 23 3 23 3 10 39 111 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 10 38 109 131 -7.559 -0.027 -6.213 -0.021 -0.642 -0.216 0.597 D 25 23 3 26 3 7 35 107 129 -6.174 -1.687 -0.566 IL 26 26 3 26 3 10 38 110 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 3 10 37 108 130 -7.559 -0.027 -6.213 0.670 -1.067 0.277 -0.473 D 28 26 3 29 3 6 35 106 128 -6.174 -1.687 -0.566 IL 29 29 3 29 3 9 38 109 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 9 36 106 129 -7.980 -0.024 -6.298 0.041 -0.647 -0.962 0.863 D 31 29 3 32 3 6 34 105 127 -5.620 -0.734 -1.403 IL 32 32 3 32 3 8 36 107 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 101 - U - - MR 33 32 3 35 3 8 35 105 128 -7.980 -0.024 -6.298 -0.784 -0.915 -1.468 1.337 D 34 32 3 35 3 5 33 104 126 -6.390 -1.568 -0.620 IR 35 35 3 35 3 8 36 106 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 100 - U - - MR 36 35 3 38 3 7 35 104 127 -7.980 -0.024 -6.298 -0.784 -0.915 -1.468 1.337 D 37 35 3 38 3 5 32 103 125 -6.390 -1.568 -0.620 IR 38 38 3 38 3 7 35 105 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 99 - U - - MR 39 38 3 41 3 6 34 103 126 -7.980 -0.024 -6.298 -0.784 -0.915 -1.468 1.337 D 40 38 3 41 3 5 32 102 124 -6.390 -1.568 -0.620 IR 41 41 3 41 3 6 34 104 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 98 - U - - MR 42 41 3 44 2 5 33 102 125 -7.855 -0.006 -0.784 -0.915 -1.468 1.337 D 43 41 3 44 2 4 32 102 124 -4.432 -0.068 IR 44 44 3 44 2 5 33 103 126 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 150 4 32 101 124 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 50 70 -0.052 -6.627 -6.035 -6.675 [ MATP 17 ] 11 45 c g - - MP 47 46 1 51 6 2 3 50 70 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.312 -3.176 -3.216 0.483 -2.273 -3.806 2.567 -2.947 -3.244 0.865 -3.640 -1.164 2.054 -3.453 0.035 -2.132 ML 48 46 1 51 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 44 u a - - MP 53 52 6 57 6 2 2 48 68 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.483 -3.259 -3.391 0.384 -2.504 -4.013 1.803 -3.141 -3.406 0.793 -3.810 -1.172 2.821 -3.652 -0.197 -2.289 ML 54 52 6 57 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 43 G C - - MP 59 58 6 63 6 2 2 46 66 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 60 58 6 63 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 42 G C - - MP 65 64 6 69 6 2 2 44 64 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 66 64 6 69 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 41 u a - - MP 71 70 6 75 4 2 2 42 62 -6.506 -6.713 -0.073 -5.127 -3.483 -3.259 -3.391 0.384 -2.504 -4.013 1.803 -3.141 -3.406 0.793 -3.810 -1.172 2.821 -3.652 -0.197 -2.289 ML 72 70 6 75 4 1 1 42 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - G - - - ML 77 76 6 79 3 1 1 39 59 -7.980 -0.024 -6.298 -0.734 -1.797 1.417 -1.184 D 78 76 6 79 3 0 0 38 58 -5.620 -0.734 -1.403 IL 79 79 3 79 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 40 - G - - MR 80 79 3 82 5 1 1 38 58 -6.747 -0.050 -6.562 -6.774 -7.666 -0.734 -1.797 1.417 -1.184 D 81 79 3 82 5 0 0 37 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 82 82 3 82 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 39 g c - - MP 83 82 3 87 4 2 2 37 57 -6.506 -6.713 -0.073 -5.127 -3.279 -2.308 -3.357 1.200 -3.682 -4.172 0.647 -3.585 -3.279 2.795 -3.746 1.283 0.336 -3.497 -1.296 -2.258 ML 84 82 3 87 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 3 87 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 3 87 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 39 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - U - - - ML 89 88 6 91 5 1 1 35 54 -6.747 -0.050 -6.562 -6.774 -7.666 -0.784 -0.915 -1.468 1.337 D 90 88 6 91 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 91 91 3 91 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 38 g u - - MP 92 91 3 96 6 2 2 34 53 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.157 -2.151 -3.278 1.366 -3.613 -4.385 0.683 -3.373 -3.089 1.966 -3.592 2.339 0.320 -3.662 -1.253 -2.096 ML 93 91 3 96 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 3 96 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 3 96 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 37 G C - - MP 98 97 6 102 6 2 2 32 51 -5.061 -8.894 -0.065 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 99 97 6 102 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 31 50 -2.897 -3.160 -0.575 -4.816 -5.592 -5.252 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 36 G C - - MP 104 103 6 108 6 2 2 30 49 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 105 103 6 108 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 35 C G - - MP 110 109 6 114 4 2 2 28 47 -6.506 -6.713 -0.073 -5.127 -3.554 -3.438 -3.402 0.227 -2.356 -3.930 3.037 -3.074 -3.439 0.586 -3.795 -1.443 1.251 -3.669 0.355 -2.316 ML 111 109 6 114 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 113 109 6 114 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 114 114 5 114 4 1 1 30 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 115 115 6 115 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - u - - - ML 116 115 6 118 5 1 1 25 44 -6.747 -0.050 -6.562 -6.774 -7.666 0.041 -0.647 -0.962 0.863 D 117 115 6 118 5 0 0 24 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 118 118 3 118 5 1 1 25 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 34 c g - - MP 119 118 3 123 6 2 2 24 43 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -2.949 -2.853 -3.024 0.458 -2.530 -3.725 2.985 -3.062 -3.057 0.801 -0.987 -1.052 0.999 -3.194 -0.396 -2.090 ML 120 118 3 123 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 3 123 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 3 123 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 33 g c - - MP 125 124 6 129 6 2 2 22 41 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.001 -2.394 -3.094 0.898 -3.126 -1.195 0.876 -3.398 -3.113 2.987 -3.550 -0.380 0.555 -3.064 -0.950 -2.182 ML 126 124 6 129 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 32 c g - - MP 131 130 6 135 4 2 2 20 39 -6.506 -6.713 -0.073 -5.127 -3.372 -3.275 -3.256 0.366 -2.267 -3.815 2.830 -2.963 -3.288 0.705 -3.668 -1.304 1.356 -3.506 0.853 -2.180 ML 132 130 6 135 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 134 130 6 135 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 135 135 5 135 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 136 136 6 136 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - U - - - ML 137 136 6 139 3 1 1 17 35 -7.559 -0.027 -6.213 -0.784 -0.915 -1.468 1.337 D 138 136 6 139 3 0 0 16 35 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - a - - - ML 140 139 3 142 3 1 1 15 34 -7.559 -0.027 -6.213 0.273 -0.773 0.194 0.088 D 141 139 3 142 3 0 0 15 33 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - A - - - ML 143 142 3 145 3 1 1 13 32 -7.559 -0.027 -6.213 1.169 -1.082 -0.998 -0.361 D 144 142 3 145 3 0 0 13 32 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - g - - - ML 146 145 3 148 2 1 1 1 1 * 0.000 -0.153 -0.672 0.624 -0.101 D 147 145 3 148 2 0 0 0 0 * 0.000 IL 148 148 3 148 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 149 148 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 150 45 1 151 3 0 8 66 89 -7.559 -0.027 -6.213 IL 151 151 2 151 3 1 9 69 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - U - - - ML 152 151 2 154 3 1 8 66 88 -7.559 -0.027 -6.213 -0.784 -0.915 -1.468 1.337 D 153 151 2 154 3 0 5 65 87 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 8 68 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - C - - - ML 155 154 3 157 3 1 7 65 87 -7.559 -0.027 -6.213 -0.830 1.244 -1.602 -0.436 D 156 154 3 157 3 0 5 64 86 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 7 67 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 48 - a - - - ML 158 157 3 160 2 1 6 64 86 -7.855 -0.006 0.670 -1.067 0.277 -0.473 D 159 157 3 160 2 0 5 63 85 -8.445 -0.004 IL 160 160 3 160 2 1 6 65 87 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 43 ] - - - - - - B 161 160 3 162 200 0 5 63 85 [ BEGL 44 ] - - - - - - S 162 161 1 163 4 0 0 26 45 -0.052 -6.627 -6.035 -6.675 [ MATP 45 ] 49 60 c g - - MP 163 162 1 167 6 2 2 26 45 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.168 -3.090 -3.097 0.480 -2.219 -3.700 2.033 -2.879 -3.134 0.813 -3.541 -1.163 1.765 -3.331 1.847 -2.059 ML 164 162 1 167 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 165 162 1 167 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 166 162 1 167 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 167 167 5 167 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 168 168 6 168 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 50 59 g c - - MP 169 168 6 173 6 2 2 24 43 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -2.792 -2.275 -2.905 1.079 -2.920 -3.633 1.062 -3.150 -0.473 2.734 -3.390 -0.202 0.749 -2.991 -0.765 -1.958 ML 170 168 6 173 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 171 168 6 173 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 172 168 6 173 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 173 173 5 173 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 174 174 6 174 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 51 58 c g - - MP 175 174 6 179 6 2 2 22 41 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.284 -3.143 -3.196 0.507 -2.279 -3.798 2.344 -2.943 -3.226 0.896 -3.627 -1.130 2.300 -3.430 0.025 -2.117 ML 176 174 6 179 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 177 174 6 179 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 178 174 6 179 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 179 179 5 179 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 180 180 6 180 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 52 57 c g - - MP 181 180 6 185 4 2 2 20 39 -6.506 -6.713 -0.073 -5.127 -2.800 -2.525 -2.872 0.979 -2.415 -3.617 2.238 -2.889 -2.894 1.517 -3.371 0.320 1.391 -3.001 0.119 -1.844 ML 182 180 6 185 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 183 180 6 185 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 184 180 6 185 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 185 185 5 185 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 186 186 6 186 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - u - - - ML 187 186 6 189 3 1 1 17 35 -7.559 -0.027 -6.213 -0.400 0.242 -1.133 0.681 D 188 186 6 189 3 0 0 16 35 -6.174 -1.687 -0.566 IL 189 189 3 189 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - a - - - ML 190 189 3 192 3 1 1 15 34 -7.559 -0.027 -6.213 0.498 -0.743 -0.125 0.103 D 191 189 3 192 3 0 0 15 33 -6.174 -1.687 -0.566 IL 192 192 3 192 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - a - - - ML 193 192 3 195 3 1 1 13 32 -7.559 -0.027 -6.213 0.935 -0.452 -0.876 -0.300 D 194 192 3 195 3 0 0 13 32 -6.174 -1.687 -0.566 IL 195 195 3 195 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - a - - - ML 196 195 3 198 2 1 1 1 1 * 0.000 0.819 -0.794 -0.856 0.146 D 197 195 3 198 2 0 0 0 0 * 0.000 IL 198 198 3 198 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 199 198 3 -1 0 0 0 0 0 [ BEGR 54 ] - - - - - - S 200 161 1 201 3 0 0 51 73 -7.559 -0.027 -6.213 IL 201 201 2 201 3 1 1 54 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 61 - A - - - ML 202 201 2 204 3 1 1 51 73 -7.559 -0.027 -6.213 1.474 -1.583 -1.292 -1.058 D 203 201 2 204 3 0 0 49 71 -6.174 -1.687 -0.566 IL 204 204 3 204 3 1 1 52 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 62 - a - - - ML 205 204 3 207 3 1 1 50 72 -7.559 -0.027 -6.213 0.223 -0.007 -0.197 -0.050 D 206 204 3 207 3 0 0 48 70 -6.174 -1.687 -0.566 IL 207 207 3 207 3 1 1 51 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 63 - g - - - ML 208 207 3 210 3 1 1 49 71 -7.559 -0.027 -6.213 0.282 -1.173 0.735 -0.566 D 209 207 3 210 3 0 0 48 70 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 50 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 64 - u - - - ML 211 210 3 213 3 1 1 48 70 -7.559 -0.131 -3.619 0.444 -0.663 -0.851 0.540 D 212 210 3 213 3 0 0 47 69 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 65 - c - - - ML 214 213 3 216 3 1 1 47 69 -3.213 -0.387 -2.971 -0.097 0.239 -0.144 -0.030 D 215 213 3 216 3 0 0 47 69 -1.595 -2.247 -1.126 IL 216 216 3 216 3 1 1 48 70 -1.206 -0.911 -4.838 0.000 0.000 0.000 0.000 [ MATL 60 ] 69 - u - - - ML 217 216 3 219 5 1 1 42 60 -6.613 -0.055 -6.429 -6.641 -7.532 -0.297 -0.014 -1.005 0.763 D 218 216 3 219 5 0 0 41 59 -5.459 -0.519 -4.721 -3.096 -3.008 IL 219 219 3 219 5 1 1 42 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 70 97 g c - - MP 220 219 3 224 6 2 2 41 59 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.036 -2.122 -3.153 1.788 -3.504 -4.242 0.744 -3.310 -3.027 1.987 -3.539 1.948 0.437 -3.474 -1.172 -2.014 ML 221 219 3 224 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 222 219 3 224 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 223 219 3 224 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 224 224 5 224 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 225 225 6 225 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 71 96 a u - - MP 226 225 6 230 6 2 2 39 57 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.237 -2.425 -3.285 2.771 -3.346 -4.380 0.928 -3.350 -3.208 1.698 -3.725 -0.009 0.501 -3.660 -1.021 -2.159 ML 227 225 6 230 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 228 225 6 230 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 229 225 6 230 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 230 230 5 230 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 231 231 6 231 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 95 G C - - MP 232 231 6 236 6 2 2 37 55 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 233 231 6 236 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 234 231 6 236 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 235 231 6 236 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 236 236 5 236 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 237 237 6 237 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 94 C G - - MP 238 237 6 242 6 2 2 35 53 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.795 -3.613 -3.602 0.069 -2.515 -4.108 3.220 -3.243 -3.636 0.465 -3.967 -1.551 1.061 -3.907 -0.213 -2.505 ML 239 237 6 242 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 240 237 6 242 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 241 237 6 242 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 242 242 5 242 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 243 243 6 243 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 93 C G - - MP 244 243 6 248 6 2 2 33 51 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.795 -3.613 -3.602 0.069 -2.515 -4.108 3.220 -3.243 -3.636 0.465 -3.967 -1.551 1.061 -3.907 -0.213 -2.505 ML 245 243 6 248 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 246 243 6 248 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 247 243 6 248 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 248 248 5 248 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 249 249 6 249 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 92 G C - - MP 250 249 6 254 6 2 2 31 49 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 251 249 6 254 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 252 249 6 254 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 253 249 6 254 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 254 254 5 254 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 255 255 6 255 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 91 C G - - MP 256 255 6 260 6 2 2 29 47 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.795 -3.613 -3.602 0.069 -2.515 -4.108 3.220 -3.243 -3.636 0.465 -3.967 -1.551 1.061 -3.907 -0.213 -2.505 ML 257 255 6 260 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 258 255 6 260 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 259 255 6 260 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 260 260 5 260 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 261 261 6 261 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 77 90 C G - - MP 262 261 6 266 4 2 2 27 45 -6.464 -7.710 -0.108 -4.163 -3.795 -3.613 -3.602 0.069 -2.515 -4.108 3.220 -3.243 -3.636 0.465 -3.967 -1.551 1.061 -3.907 -0.213 -2.505 ML 263 261 6 266 4 1 1 26 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 264 261 6 266 4 1 1 26 44 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 265 261 6 266 4 0 0 24 42 -12.737 -14.007 -2.036 -0.404 IL 266 266 5 266 4 1 1 26 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 267 267 6 267 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 69 ] - 89 - A - - MR 268 267 6 270 5 1 1 25 43 -6.747 -0.155 -3.672 -6.774 -7.666 1.474 -1.583 -1.292 -1.058 D 269 267 6 270 5 0 0 24 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 270 270 3 270 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 70 ] 78 88 C G - - MP 271 270 3 275 6 2 2 24 42 -8.914 -8.853 -0.024 -7.629 -7.909 -8.304 -3.612 -3.393 -3.444 0.263 -2.417 -3.971 3.089 -3.120 -3.477 0.723 -3.822 -1.325 1.170 -3.731 -0.115 -2.354 ML 272 270 3 275 6 1 1 23 41 -6.666 -7.012 -0.856 -1.421 -6.862 -4.391 -0.037 0.432 -0.736 0.106 MR 273 270 3 275 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 274 270 3 275 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 275 275 5 275 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 276 276 6 276 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 71 ] 79 87 G C - - MP 277 276 6 281 6 2 2 22 40 -8.954 -8.894 -0.023 -7.670 -7.950 -8.345 -3.966 -2.732 -4.025 0.690 -4.141 -4.363 0.315 -4.187 -3.775 3.377 -4.174 -0.417 -0.098 -3.948 -1.688 -2.914 ML 278 276 6 281 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 279 276 6 281 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 280 276 6 281 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 281 281 5 281 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 282 282 6 282 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 72 ] 80 86 a u - - MP 283 282 6 287 4 2 2 20 38 -6.506 -2.989 -0.261 -5.127 -2.998 -2.190 -3.094 2.340 -3.370 -4.178 0.844 -3.273 -3.028 1.948 -3.553 1.056 0.541 -3.389 -1.066 -1.993 ML 284 282 6 287 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 285 282 6 287 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 286 282 6 287 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 287 287 5 287 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 288 288 6 288 3 1 1 19 38 -1.686 -0.640 -4.387 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - A - - - ML 289 288 6 291 3 1 1 17 35 -7.559 -0.027 -6.213 1.237 -1.267 -0.687 -0.723 D 290 288 6 291 3 0 0 16 35 -6.174 -1.687 -0.566 IL 291 291 3 291 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - a - - - ML 292 291 3 294 3 1 1 15 34 -7.559 -0.027 -6.213 0.498 -0.743 -0.125 0.103 D 293 291 3 294 3 0 0 15 33 -6.174 -1.687 -0.566 IL 294 294 3 294 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 83 - u - - - ML 295 294 3 297 3 1 1 13 32 -7.559 -0.027 -6.213 0.201 -0.017 -0.860 0.391 D 296 294 3 297 3 0 0 13 32 -6.174 -1.687 -0.566 IL 297 297 3 297 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 84 - U - - - ML 298 297 3 300 2 1 1 1 1 * 0.000 -0.784 -0.915 -1.468 1.337 D 299 297 3 300 2 0 0 0 0 * 0.000 IL 300 300 3 300 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 77 ] - - - - - - E 301 300 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RcsR1 ACC RF02552 DESC RcsR1 sRNA LENG 96 MAXL 193 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 02:57:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02552/CM NSEQ 10 EFFN 1.860352 CKSUM 472963926 STATS LOCAL MSV -8.9295 0.71880 STATS LOCAL VITERBI -10.1580 0.71880 STATS LOCAL FORWARD -3.1616 0.71880 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56637 1.38426 1.26913 1.34856 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 0.00000 * 1 0.20295 2.99313 2.74173 2.67237 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 2 2.54874 0.27277 3.11832 2.15143 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 3 0.20295 2.99313 2.74173 2.67237 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 4 2.38229 2.38574 2.88906 0.27442 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 5 2.07159 1.87552 2.57953 0.43862 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 6 1.70415 2.19253 0.79410 1.36864 6 g - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 7 2.54874 0.27277 3.11832 2.15143 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 8 1.46976 1.94095 1.52050 0.89686 8 u - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 9 0.85655 2.33217 1.10106 1.92572 9 a - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 10 1.43255 1.98528 2.24905 0.65690 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 11 2.42545 0.85582 2.14998 0.99387 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 12 2.71464 1.71483 2.43047 0.40680 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 13 2.43080 2.98552 0.21300 2.93065 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 14 2.42986 2.98455 0.21325 2.92926 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 15 2.71035 1.71475 2.42882 0.40746 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 16 2.44268 3.28224 0.20079 2.85697 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 17 1.89807 2.52368 0.38779 2.39225 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 18 2.38229 2.38574 2.88906 0.27442 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 19 1.81530 2.64598 0.37544 2.53464 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 20 2.42939 2.98405 0.21338 2.92855 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.17685 1.96879 3.79571 0.29562 1.36286 1.09861 0.40547 21 2.42467 2.97912 0.21468 2.92149 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 22 2.66493 0.48135 2.41285 1.50108 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 23 1.43255 1.98528 2.24905 0.65690 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 24 2.42750 0.54302 1.83157 1.76848 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 25 2.14708 2.05336 0.42080 2.31919 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 26 2.53478 0.63898 2.28665 1.23346 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 27 2.38229 2.38574 2.88906 0.27442 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 28 1.21123 2.02951 1.16462 1.35198 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 29 0.44446 2.35460 2.31679 1.79995 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 30 1.65003 1.94656 0.78166 1.57240 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 31 1.82867 2.44736 0.42713 2.29790 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 32 2.54461 0.41017 2.23561 1.89027 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 33 2.00806 2.35674 0.41360 2.20950 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 34 1.92630 2.57297 0.37139 2.42781 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 35 3.12794 0.25222 2.80914 2.12978 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 36 3.13256 0.25168 2.81105 2.13069 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 37 2.74055 1.70307 2.44577 0.40544 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 38 2.62833 0.72599 2.33880 1.05695 39 c - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 39 2.44268 3.28224 0.20079 2.85697 40 G - - - 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 40 0.46358 2.60741 1.55151 2.46136 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 41 3.13869 0.25096 2.81357 2.13188 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 42 3.13694 0.25116 2.81285 2.13154 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 43 0.46408 2.60578 1.55148 2.45918 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 44 1.13887 2.30985 0.75999 2.18151 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 45 2.38229 2.38574 2.88906 0.27442 46 U - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 46 2.54874 0.27277 3.11832 2.15143 47 C - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 47 0.85655 2.33217 1.10106 1.92572 48 a - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 48 2.51053 1.41191 2.26242 0.56036 49 U - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 49 1.98434 2.23862 0.45091 2.12971 50 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 50 2.41849 1.05601 2.14272 0.80796 51 u - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 51 1.99003 1.03971 1.36773 1.36623 52 c - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 52 1.86021 1.12268 2.39492 0.84916 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 53 1.01101 1.99866 1.43973 1.33317 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 54 0.61773 1.72036 2.17932 1.77955 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 55 0.73184 2.06418 2.13079 1.29714 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 56 1.67632 1.78695 0.87658 1.47288 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 57 0.92615 2.30545 0.93823 2.18135 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 58 1.83753 0.62807 2.05116 1.72271 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 59 1.41533 2.41822 0.57150 2.26920 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 60 0.20295 2.99313 2.74173 2.67237 61 A - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 61 1.25110 1.32371 1.47608 1.51808 62 a - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 62 1.21630 2.44778 0.72051 2.03494 63 g - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 63 1.05224 1.95803 2.11339 0.94448 64 u - - , 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 64 1.58291 1.08599 1.43216 1.52206 65 c - - , 1.38629 1.38629 1.38629 1.38629 0.40829 1.83106 1.74313 1.13746 0.38659 1.09861 0.40547 65 1.75409 1.36470 2.26460 0.76013 69 u - - , 1.38629 1.38629 1.38629 1.38629 0.05448 3.63024 3.63024 1.46634 0.26236 0.22857 1.58801 66 1.33434 2.54978 0.56695 2.39342 70 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 67 0.45981 2.48218 1.62790 2.42259 71 A - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 68 2.42251 2.97686 0.21527 2.91826 72 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 69 2.94097 0.31039 2.68914 1.92354 73 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 70 2.94240 0.31019 2.68976 1.92377 74 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 71 2.42494 2.97940 0.21460 2.92189 75 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 72 2.94397 0.30996 2.69044 1.92403 76 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 73 2.94443 0.30990 2.69064 1.92410 77 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 74 2.53189 0.43143 2.39138 1.71810 78 C - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 75 2.35221 2.90348 0.23559 2.81505 79 G - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 76 0.84620 2.39605 0.98496 2.24030 80 a - - < 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 77 0.38967 2.55691 2.00018 2.20849 81 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 78 1.01101 1.99866 1.43973 1.33317 82 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 79 1.25325 1.33475 2.10258 1.11152 83 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 80 2.38229 2.38574 2.88906 0.27442 84 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21995 1.74313 3.79571 0.23958 1.54628 1.09861 0.40547 81 2.48072 1.55381 2.21697 0.51762 86 U - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 82 3.13338 0.25158 2.81139 2.13085 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.17685 3.79571 1.96879 1.46634 0.26236 1.09861 0.40547 83 2.03289 2.58914 0.34281 2.47477 88 G - - > 1.38629 1.38629 1.38629 1.38629 0.05224 3.67110 3.67110 1.46634 0.26236 0.27901 1.41278 84 0.20295 2.99313 2.74173 2.67237 89 A - - - 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 85 2.19679 2.85634 0.26872 2.70295 90 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 86 2.19630 2.85573 0.26891 2.70218 91 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 87 3.12572 0.25249 2.80822 2.12935 92 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 88 2.19416 2.85311 0.26971 2.69883 93 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 89 2.19185 2.85029 0.27058 2.69523 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 90 3.10032 0.25554 2.79761 2.12432 95 C - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 91 2.62292 1.89180 2.28879 0.39272 96 U - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 92 2.56155 1.60054 2.33702 0.47095 97 U - - > 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 93 2.38229 2.38574 2.88906 0.27442 98 U - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 94 2.38229 2.38574 2.88906 0.27442 99 U - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 95 2.38229 2.38574 2.88906 0.27442 100 U - - : 1.38629 1.38629 1.38629 1.38629 0.04597 3.79571 3.79571 1.46634 0.26236 1.09861 0.40547 96 2.38229 2.38574 2.88906 0.27442 101 U - - : 1.38629 1.38629 1.38629 1.38629 0.02325 3.77299 * 1.46634 0.26236 0.00000 * //