INFERNAL1/a [1.1.5 | Sep 2023] NAME Ms_IGR-8 ACC RF02470 DESC Mycobacterium sRNA Ms_IGR-8 STATES 193 NODES 50 CLEN 63 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 17:22:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02470/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.915039 CKSUM 3753909479 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.10 NC 43.70 EFP7GF -7.0329 0.72782 ECMLC 0.62016 -8.53047 0.77468 1600000 384923 0.003118 ECMGC 0.50726 -14.47354 -3.27826 1600000 117056 0.003417 ECMLI 0.59226 -7.47749 1.47591 1600000 241057 0.004978 ECMGI 0.52186 -11.47274 -1.15132 1600000 87358 0.004579 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -7.304 -7.511 -0.041 -5.925 IL 1 1 2 1 4 1 13 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 82 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 14 78 98 -8.298 -0.016 -6.952 0.234 0.824 -1.517 -0.506 D 4 2 3 5 3 0 8 77 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 13 77 97 -8.298 -0.016 -6.952 0.175 -1.040 -1.362 0.997 D 7 5 3 8 3 0 7 76 96 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 12 76 96 -8.298 -0.016 -6.952 0.373 -0.151 0.054 -0.383 D 10 8 3 11 3 0 7 75 95 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 12 75 95 -8.298 -0.016 -6.952 0.346 -0.970 0.018 0.270 D 13 11 3 14 3 0 6 74 94 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 10 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 11 74 94 -8.298 -0.016 -6.952 1.040 -0.108 -1.356 -0.676 D 16 14 3 17 3 0 5 73 93 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 10 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 1 10 73 93 -8.298 -0.016 -6.952 -0.673 -1.372 0.937 0.100 D 19 17 3 20 3 0 4 72 92 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 9 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - u - - - ML 21 20 3 23 3 1 10 72 92 -8.298 -0.016 -6.952 0.253 0.068 -1.176 0.398 D 22 20 3 23 3 0 4 71 90 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 8 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 9 71 91 -8.298 -0.016 -6.952 1.040 -0.108 -1.356 -0.676 D 25 23 3 26 3 0 3 70 89 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 8 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 1 9 70 89 -8.298 -0.016 -6.952 0.234 0.824 -1.517 -0.506 D 28 26 3 29 3 0 2 69 88 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 7 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 8 69 88 -8.298 -0.016 -6.952 -2.119 -2.008 -2.878 1.759 D 31 29 3 32 3 0 2 68 87 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 6 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 7 68 87 -8.298 -0.016 -6.952 -2.272 -3.587 1.841 -2.971 D 34 32 3 35 3 0 1 67 86 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 6 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 7 67 86 -8.298 -0.016 -6.952 -1.099 0.981 -1.941 0.378 D 37 35 3 38 3 0 1 66 85 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 5 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 6 66 85 -8.298 -0.016 -6.952 -2.558 1.786 -3.384 -1.813 D 40 38 3 41 3 0 0 65 84 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 4 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 6 65 84 -8.298 -0.016 -6.952 -2.272 -3.587 1.841 -2.971 D 43 41 3 44 3 0 0 64 83 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 5 64 83 -8.298 -0.016 -6.952 -2.558 1.786 -3.384 -1.813 D 46 44 3 47 3 0 0 62 82 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 3 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 4 63 82 -8.298 -0.016 -6.952 -2.272 -3.587 1.841 -2.971 D 49 47 3 50 3 0 0 61 81 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 3 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 4 62 81 -8.298 -0.016 -6.952 1.831 -3.046 -2.613 -2.658 D 52 50 3 53 3 0 0 60 80 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 2 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 4 61 80 -8.298 -0.016 -6.952 0.345 -1.852 1.029 -1.278 D 55 53 3 56 3 0 0 59 79 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 2 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 3 59 79 -8.298 -0.016 -6.952 -1.045 0.116 -1.826 1.104 D 58 56 3 59 3 0 0 58 78 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 3 58 78 -8.298 -0.016 -6.952 -2.272 -3.587 1.841 -2.971 D 61 59 3 62 3 0 0 57 76 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 5 1 2 57 76 -7.388 -0.032 -7.204 -7.416 -8.308 -2.119 -2.008 -2.878 1.759 D 64 62 3 65 5 0 0 56 75 -4.959 -0.803 -4.221 -2.596 -2.508 IL 65 65 3 65 5 1 1 58 77 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 63 G C - - MP 66 65 3 70 6 2 3 56 75 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.391 -3.410 -5.582 -0.251 -6.140 -4.937 -1.342 -5.849 -4.726 3.762 -5.022 -1.142 -1.712 -4.886 -3.419 -4.449 ML 67 65 3 70 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 62 A U - - MP 72 71 6 76 6 2 3 54 73 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -4.426 -3.312 -4.379 3.625 -5.062 -6.203 -0.718 -4.377 -4.267 0.390 -4.844 -0.700 -1.131 -5.270 -2.656 -3.191 ML 73 71 6 76 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 61 A U - - MP 78 77 6 82 6 2 3 52 71 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -4.426 -3.312 -4.379 3.625 -5.062 -6.203 -0.718 -4.377 -4.267 0.390 -4.844 -0.700 -1.131 -5.270 -2.656 -3.191 ML 79 77 6 82 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 60 G C - - MP 84 83 6 88 6 2 3 50 69 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.391 -3.410 -5.582 -0.251 -6.140 -4.937 -1.342 -5.849 -4.726 3.762 -5.022 -1.142 -1.712 -4.886 -3.419 -4.449 ML 85 83 6 88 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 26 59 C G - - MP 90 89 6 94 6 2 2 48 67 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.290 -5.258 -4.849 -1.440 -3.425 -5.162 3.727 -4.309 -4.933 -1.284 -5.104 -3.226 0.001 -5.308 -1.159 -3.752 ML 91 89 6 94 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 27 58 U A - - MP 96 95 6 100 6 2 2 46 65 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.039 -4.877 -4.778 -1.122 -3.557 -5.262 0.780 -4.305 -4.777 -0.969 -5.108 -2.750 3.619 -5.150 -1.213 -3.496 ML 97 95 6 100 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 28 57 G C - - MP 102 101 6 106 6 2 2 44 63 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -4.031 -2.754 -4.022 1.819 -4.752 -4.661 -0.139 -4.404 -4.009 3.188 -4.407 -0.361 -0.427 -4.021 -2.125 -2.914 ML 103 101 6 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 29 56 C G - - MP 108 107 6 112 6 2 2 42 61 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -4.125 -4.072 -3.941 -0.242 -2.751 -4.464 3.009 -3.500 -3.944 -0.040 -4.306 -2.009 2.121 -4.235 -0.405 -2.783 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 55 U A - - MP 114 113 6 118 6 2 2 40 59 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.039 -4.877 -4.778 -1.122 -3.557 -5.262 0.780 -4.305 -4.777 -0.969 -5.108 -2.750 3.619 -5.150 -1.213 -3.496 ML 115 113 6 118 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 54 G C - - MP 120 119 6 124 6 2 2 38 57 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.391 -3.410 -5.582 -0.251 -6.140 -4.937 -1.342 -5.849 -4.726 3.762 -5.022 -1.142 -1.712 -4.886 -3.419 -4.449 ML 121 119 6 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 53 C G - - MP 126 125 6 130 6 2 2 36 55 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -4.247 -4.258 -4.005 -0.488 -2.758 -4.461 3.067 -3.537 -4.031 -0.320 -4.355 -2.289 0.819 -4.330 1.763 -2.882 ML 127 125 6 130 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 52 G C - - MP 132 131 6 136 6 2 2 34 53 -9.254 -9.193 -0.019 -7.970 -8.249 -8.644 -5.391 -3.410 -5.582 -0.251 -6.140 -4.937 -1.342 -5.849 -4.726 3.762 -5.022 -1.142 -1.712 -4.886 -3.419 -4.449 ML 133 131 6 136 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 51 a u - - MP 138 137 6 142 4 2 2 32 51 -7.194 -8.440 -0.064 -4.893 -3.191 1.381 -3.454 2.107 -3.995 -4.190 0.015 -3.617 -3.181 1.416 -3.568 1.760 -0.235 -3.650 -1.768 -2.316 ML 139 137 6 142 4 1 1 32 51 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 31 50 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 142 142 5 142 4 1 1 32 51 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 50 - g - - MR 144 143 6 146 5 1 1 30 49 -7.388 -0.032 -7.204 -7.416 -8.308 -0.673 -1.372 0.937 0.100 D 145 143 6 146 5 0 0 29 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 49 g c - - MP 147 146 3 151 4 2 2 29 48 -7.304 -7.511 -0.041 -5.925 -3.635 -2.547 -3.653 2.010 -4.365 -4.582 0.071 -4.011 -3.700 2.598 -4.149 1.512 -0.183 -3.801 -1.856 -2.554 ML 148 146 3 151 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 3 151 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - u - - - ML 153 152 6 155 3 1 1 27 46 -8.298 -0.016 -6.952 0.175 -1.040 -1.362 0.997 D 154 152 6 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - a - - - ML 156 155 3 158 3 1 1 26 44 -8.298 -0.016 -6.952 0.970 -1.134 -1.266 0.226 D 157 155 3 158 3 0 0 25 43 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - u - - - ML 159 158 3 161 3 1 1 24 43 -8.668 -0.015 -6.986 0.253 0.086 -1.178 0.384 D 160 158 3 161 3 0 0 23 42 -5.620 -0.734 -1.403 IL 161 161 3 161 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 48 - U - - MR 162 161 3 164 3 1 1 23 42 -8.668 -0.015 -6.986 -2.119 -2.008 -2.878 1.759 D 163 161 3 164 3 0 0 22 41 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 47 - a - - MR 165 164 3 167 3 1 1 22 41 -8.668 -0.015 -6.986 0.988 -1.144 -1.272 0.202 D 166 164 3 167 3 0 0 21 40 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 23 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 46 - A - - MR 168 167 3 170 5 1 1 21 40 -7.388 -0.032 -7.204 -7.416 -8.308 1.831 -3.046 -2.613 -2.658 D 169 167 3 170 5 0 0 21 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 170 170 3 170 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 39 45 u g - - MP 171 170 3 175 4 2 2 20 39 -7.304 -7.511 -0.041 -5.925 -3.592 -3.207 -3.565 0.394 -2.952 -4.267 1.344 -3.471 -3.591 2.063 -4.028 -1.060 0.774 -3.767 2.274 -2.500 ML 172 170 3 175 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 3 175 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 40 - C - - - ML 177 176 6 179 3 1 1 17 36 -8.298 -0.016 -6.952 -2.558 1.786 -3.384 -1.813 D 178 176 6 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 41 - G - - - ML 180 179 3 182 3 1 1 16 34 -8.298 -0.016 -6.952 0.319 -1.863 1.049 -1.290 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 42 - G - - - ML 183 182 3 185 3 1 1 15 33 -8.298 -0.016 -6.952 -2.272 -3.587 1.841 -2.971 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 43 - u - - - ML 186 185 3 188 3 1 1 13 31 -8.298 -0.016 -6.952 -0.397 0.022 -0.116 0.381 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 44 - u - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -0.625 -1.086 -0.122 0.972 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Ms_IGR-8 ACC RF02470 DESC Mycobacterium sRNA Ms_IGR-8 LENG 63 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 17:22:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02470/CM NSEQ 3 EFFN 2.510742 CKSUM 3753909479 STATS LOCAL MSV -8.6594 0.72782 STATS LOCAL VITERBI -9.1434 0.72782 STATS LOCAL FORWARD -3.2610 0.72782 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49687 1.41545 1.25760 1.39024 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 1.22179 0.85713 2.35894 1.67987 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 1.26295 2.05125 2.27243 0.72248 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 1.12910 1.50324 1.36564 1.61421 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 1.14889 2.02307 1.38593 1.20173 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.69552 1.47321 2.25661 1.78803 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 1.78763 2.26671 0.77917 1.30858 6 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 1.21313 1.35478 2.16184 1.10982 7 u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.69552 1.47321 2.25661 1.78803 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 1.22179 0.85712 2.35894 1.67987 9 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.68555 2.63671 3.20591 0.19882 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.78253 3.67143 0.13493 3.24665 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.05975 0.74616 2.63173 1.11971 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.94380 0.18278 3.52009 2.46762 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.78253 3.67143 0.13493 3.24665 14 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.94380 0.18278 3.52009 2.46762 15 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.78253 3.67143 0.13493 3.24665 16 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.14205 3.31964 3.03590 3.03183 17 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 1.14760 2.57586 0.70814 2.17196 18 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.02654 1.31846 2.56216 0.64717 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.78253 3.67143 0.13493 3.24665 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.68555 2.63671 3.20591 0.19882 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.63983 3.32493 0.15730 3.26485 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.30996 2.87217 1.90279 2.80029 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.31010 2.87155 1.90267 2.79942 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.63714 3.32163 0.15787 3.26029 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.27720 0.22130 3.06230 2.17148 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.05924 1.97113 2.82030 0.28211 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 1.45264 2.61803 0.49315 2.49614 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.61043 0.68765 2.36256 1.10999 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.05727 1.97100 2.81940 0.28233 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.63447 3.31835 0.15843 3.25576 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.72164 0.65345 2.50169 1.10250 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.63408 3.31787 0.15852 3.25509 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.88582 2.40619 0.93858 2.24164 34 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 1.31829 2.46659 0.59993 2.31584 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 1.26295 2.05125 2.27243 0.72248 36 u - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.73831 2.12064 2.20949 1.22975 37 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 1.21280 1.34338 2.16293 1.11876 38 u - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.19760 1.66423 1.21672 0.90784 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.94380 0.18278 3.52009 2.46762 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 1.16435 2.58336 0.69461 2.17960 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.78253 3.67143 0.13493 3.24665 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 1.62588 1.38632 1.48093 1.12134 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 1.76201 2.08150 1.47891 0.74303 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 1.97528 1.30861 0.79930 1.95587 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 0.14205 3.31964 3.03590 3.03183 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 0.72634 2.12717 2.21317 1.24549 47 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 2.68555 2.63671 3.20591 0.19882 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.56105 0.93215 2.28051 0.85135 49 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 1.78763 2.26671 0.77917 1.30858 50 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 2.45889 1.08741 2.20752 0.76055 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 3.45014 0.18810 3.15369 2.33270 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 1.96025 2.66391 0.34772 2.48647 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 3.45133 0.18800 3.15423 2.33293 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 0.32022 3.00458 1.80783 2.80609 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 1.25508 2.52864 0.61250 2.37317 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 2.73097 0.56344 2.43237 1.28096 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 0.32004 3.00548 1.80794 2.80716 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 2.44897 3.22890 0.19116 3.03627 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 3.45653 0.18757 3.15657 2.33392 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 61 3.02245 2.20575 2.68113 0.25791 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 62 3.02117 2.20559 2.68063 0.25806 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 63 3.44840 0.18825 3.15290 2.33237 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //