INFERNAL1/a [1.1.5 | Sep 2023] NAME ncr1241 ACC RF02451 DESC Bacillus sRNA ncr1241 STATES 198 NODES 54 CLEN 63 W 91 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 22:23:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02451/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 3.105469 CKSUM 3407072486 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 61.40 NC 59.40 EFP7GF -11.4485 0.71920 ECMLC 0.53721 -9.89993 1.32699 1600000 499469 0.002403 ECMGC 0.40357 -16.77588 -2.70844 1600000 116859 0.003423 ECMLI 0.50265 -8.35178 3.17942 1600000 394847 0.003039 ECMGI 0.44133 -11.90027 0.34162 1600000 88800 0.004505 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 91 127 -7.364 -7.571 -0.040 -5.985 IL 1 1 2 1 4 1 17 94 130 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 93 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 16 92 127 -8.354 -0.016 -7.008 0.393 0.347 -1.263 -0.003 D 4 2 3 5 3 0 13 90 125 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 92 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 15 91 126 -8.722 -0.014 -7.040 0.135 0.289 -0.602 0.030 D 7 5 3 8 3 0 12 89 125 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 15 91 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 72 - U - - MR 9 8 3 11 3 1 14 90 125 -8.722 -0.014 -7.040 -2.228 -2.099 -2.990 1.777 D 10 8 3 11 3 0 11 88 123 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 90 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 71 - U - - MR 12 11 3 14 3 1 13 89 124 -8.722 -0.014 -7.040 -0.552 -1.286 -1.807 1.391 D 13 11 3 14 3 0 10 87 122 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 13 89 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 70 - U - - MR 15 14 3 17 3 1 12 88 123 -8.722 -0.014 -7.040 -2.228 -2.099 -2.990 1.777 D 16 14 3 17 3 0 9 86 121 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 88 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - U - - MR 18 17 3 20 3 1 11 87 122 -8.722 -0.014 -7.040 -2.228 -2.099 -2.990 1.777 D 19 17 3 20 3 0 9 85 120 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 87 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - U - - MR 21 20 3 23 3 1 10 86 121 -8.722 -0.014 -7.040 -2.228 -2.099 -2.990 1.777 D 22 20 3 23 3 0 8 84 120 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 86 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - U - - MR 24 23 3 26 2 1 9 85 120 -8.813 -0.003 -1.388 -0.668 -2.141 1.466 D 25 23 3 26 2 0 8 84 119 -4.432 -0.068 IR 26 26 3 26 2 1 9 85 121 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 28 108 0 8 84 119 [ BEGL 10 ] - - - - - - S 28 27 1 29 4 0 0 40 59 -0.038 -7.058 -6.466 -7.106 [ MATP 11 ] 3 28 u a - - MP 29 28 1 33 6 2 2 40 59 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -1.943 -2.016 -2.125 1.430 -2.058 -2.960 1.407 0.379 -2.178 1.147 -2.731 0.052 1.442 -2.260 -0.183 -0.287 ML 30 28 1 33 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 1 33 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 1 33 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 27 A U - - MP 35 34 6 39 6 2 2 38 57 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -4.538 -3.402 -4.474 3.660 -5.225 -6.384 -0.874 -4.464 -4.367 0.267 -4.950 -0.777 -1.285 -5.425 -2.810 -3.286 ML 36 34 6 39 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 26 a u - - MP 41 40 6 45 6 2 2 36 55 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -2.327 -2.236 -2.470 2.503 -2.511 -3.321 1.003 -2.794 -2.559 1.395 -3.097 -0.485 0.799 -0.777 -0.596 -0.517 ML 42 40 6 45 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 6 25 G C - - MP 47 46 6 51 6 2 2 34 53 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -5.498 -3.463 -5.711 -0.328 -6.286 -4.976 -1.463 -5.977 -4.787 3.777 -5.077 -1.202 -1.831 -4.953 -3.548 -4.576 ML 48 46 6 51 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 7 24 G C - - MP 53 52 6 57 4 2 2 32 51 -7.364 -7.571 -0.040 -5.985 -5.498 -3.463 -5.711 -0.328 -6.286 -4.976 -1.463 -5.977 -4.787 3.777 -5.077 -1.202 -1.831 -4.953 -3.548 -4.576 ML 54 52 6 57 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 57 57 5 57 4 1 1 34 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 8 - C - - - ML 59 58 6 61 3 1 1 30 49 -8.354 -0.016 -7.008 -2.692 1.805 -3.514 -1.923 D 60 58 6 61 3 0 0 29 48 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 9 - U - - - ML 62 61 3 64 3 1 1 29 48 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 63 61 3 64 3 0 0 28 47 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 10 - U - - - ML 65 64 3 67 3 1 1 28 46 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 66 64 3 67 3 0 0 27 46 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 11 - U - - - ML 68 67 3 70 3 1 1 26 45 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 69 67 3 70 3 0 0 25 44 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 12 - C - - - ML 71 70 3 73 3 1 1 25 44 -8.354 -0.016 -7.008 -2.692 1.805 -3.514 -1.923 D 72 70 3 73 3 0 0 24 43 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 13 - U - - - ML 74 73 3 76 3 1 1 24 43 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 75 73 3 76 3 0 0 23 42 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 14 - A - - - ML 77 76 3 79 3 1 1 23 42 -8.354 -0.016 -7.008 1.844 -3.159 -2.715 -2.782 D 78 76 3 79 3 0 0 22 41 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - G - - - ML 80 79 3 82 3 1 1 22 41 -8.354 -0.016 -7.008 -2.383 -3.709 1.854 -3.091 D 81 79 3 82 3 0 0 21 40 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - U - - - ML 83 82 3 85 3 1 1 21 40 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 84 82 3 85 3 0 0 20 39 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - A - - - ML 86 85 3 88 3 1 1 20 38 -8.354 -0.016 -7.008 1.844 -3.159 -2.715 -2.782 D 87 85 3 88 3 0 0 19 38 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - U - - - ML 89 88 3 91 3 1 1 18 37 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 90 88 3 91 3 0 0 18 37 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - U - - - ML 92 91 3 94 3 1 1 17 36 -8.354 -0.016 -7.008 -2.228 -2.099 -2.990 1.777 D 93 91 3 94 3 0 0 17 35 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - C - - - ML 95 94 3 97 3 1 1 16 34 -8.354 -0.016 -7.008 -2.692 1.805 -3.514 -1.923 D 96 94 3 97 3 0 0 16 34 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - C - - - ML 98 97 3 100 3 1 1 14 33 -8.354 -0.016 -7.008 -2.692 1.805 -3.514 -1.923 D 99 97 3 100 3 0 0 15 33 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 22 - C - - - ML 101 100 3 103 3 1 1 13 31 -8.354 -0.147 -3.417 -2.692 1.805 -3.514 -1.923 D 102 100 3 103 3 0 0 13 32 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 23 - C - - - ML 104 103 3 106 2 1 1 1 1 * 0.000 -2.380 1.759 -3.211 -1.668 D 105 103 3 106 2 0 0 0 0 * 0.000 IL 106 106 3 106 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 107 106 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 108 27 1 109 3 0 0 58 93 -8.354 -0.122 -3.681 IL 109 109 2 109 3 1 1 60 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 110 109 2 112 3 1 1 58 93 -8.249 -0.017 -6.903 -2.026 -1.930 -2.782 1.743 D 111 109 2 112 3 0 0 56 92 -7.062 -0.672 -1.454 IL 112 112 3 112 3 1 1 59 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - a - - - ML 113 112 3 115 3 1 1 57 92 -3.425 -0.153 -7.008 0.548 -1.019 -0.095 0.148 D 114 112 3 115 3 0 0 54 90 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 58 94 -0.992 -1.101 -5.008 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - - - ML 116 115 3 118 3 1 1 55 91 -8.354 -0.125 -3.642 -0.282 -1.031 -0.735 1.062 D 117 115 3 118 3 0 0 53 89 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 56 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - - - ML 119 118 3 121 5 1 1 54 90 -2.701 -0.269 -7.157 -7.369 -8.261 -2.020 -1.925 -2.775 1.742 D 120 118 3 121 5 0 0 53 88 -5.538 -0.486 -4.799 -3.174 -3.087 IL 121 121 3 121 5 1 1 54 90 -2.986 -0.313 -4.664 -6.497 -5.770 0.000 0.000 0.000 0.000 [ MATP 38 ] 37 66 g c - - MP 122 121 3 126 6 2 2 53 89 -9.281 -9.220 -0.083 -7.996 -4.436 -8.671 -3.216 -2.288 -3.286 1.031 -3.725 -3.879 0.447 -3.691 -3.368 2.714 -3.730 1.496 0.182 -0.549 -1.394 -2.302 ML 123 121 3 126 6 1 1 51 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 51 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 48 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 52 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 52 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 38 65 G C - - MP 128 127 6 132 6 2 2 51 87 -9.217 -9.156 -0.020 -7.933 -8.213 -8.608 -5.239 -3.335 -5.402 -0.142 -5.929 -4.882 -1.169 -5.668 -4.637 3.738 -4.941 -1.058 -1.542 -4.789 -3.236 -4.271 ML 129 127 6 132 6 1 1 49 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 49 85 -7.629 -6.358 -0.819 -6.336 -1.470 -4.550 -0.299 -0.564 -0.931 0.990 D 131 127 6 132 6 0 0 46 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 50 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 50 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 39 64 A U - - MP 134 133 6 138 6 2 2 49 85 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -4.538 -3.402 -4.474 3.660 -5.225 -6.384 -0.874 -4.464 -4.367 0.267 -4.950 -0.777 -1.285 -5.425 -2.810 -3.286 ML 135 133 6 138 6 1 1 47 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 47 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 44 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 48 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 48 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 40 63 c g - - MP 140 139 6 144 6 2 2 47 83 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -4.124 -4.071 -3.955 -0.242 -2.784 -4.493 2.803 -3.526 -3.955 -0.046 -4.326 -2.006 2.447 -4.242 -0.437 -2.797 ML 141 139 6 144 6 1 1 45 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 45 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 42 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 46 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 46 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 41 62 g c - - MP 146 145 6 150 6 2 2 45 81 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -3.193 -2.460 -3.246 1.930 -3.440 -4.042 1.238 -3.541 -3.339 2.166 -3.786 1.241 0.484 -3.324 -1.119 -2.233 ML 147 145 6 150 6 1 1 43 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 43 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 40 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 44 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 44 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 42 61 c g - - MP 152 151 6 156 6 2 2 43 79 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -3.541 -3.237 -3.544 2.208 -2.891 -4.308 2.509 -3.416 -3.540 0.783 -4.007 -1.085 0.897 -3.769 -0.577 -2.451 ML 153 151 6 156 6 1 1 41 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 41 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 38 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 42 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 42 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 43 60 g c - - MP 158 157 6 162 6 2 2 41 77 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -3.455 -2.561 -3.434 1.873 -3.710 -4.176 0.712 -3.778 -3.604 2.711 -4.015 -0.277 0.946 -3.454 -1.256 -2.398 ML 159 157 6 162 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 39 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 36 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 40 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 40 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 44 59 a u - - MP 164 163 6 168 6 2 2 39 75 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -2.571 -2.427 -2.702 2.356 -2.571 -3.534 1.591 -2.921 -2.752 1.262 -0.389 -0.570 0.906 -2.852 -0.528 -1.818 ML 165 163 6 168 6 1 1 37 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 37 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 34 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 38 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 38 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 45 58 c g - - MP 170 169 6 174 6 2 2 37 73 -9.281 -9.220 -0.019 -7.996 -8.276 -8.671 -2.963 -2.905 -3.051 1.857 -2.524 -3.841 2.092 -3.046 -3.069 0.924 -3.583 -0.997 1.569 -3.206 0.534 -2.045 ML 171 169 6 174 6 1 1 35 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 35 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 32 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 37 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 36 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 46 57 c g - - MP 176 175 6 180 4 2 2 35 71 -7.364 -2.387 -0.346 -5.985 -3.308 -2.863 -3.358 0.788 -2.947 -4.158 2.429 -3.369 -3.380 1.981 -3.866 0.166 1.048 -3.479 -0.581 -2.259 ML 177 175 6 180 4 1 1 33 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 33 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 31 67 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 36 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 36 72 -0.746 -1.381 -5.673 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - u - - - ML 182 181 6 184 3 1 1 17 36 -8.354 -0.266 -2.596 -0.362 0.261 -1.436 0.726 D 183 181 6 184 3 0 0 17 35 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - a - - - ML 185 184 3 187 3 1 1 16 35 -8.107 -0.184 -3.108 0.884 -1.022 -0.493 -0.072 D 186 184 3 187 3 0 0 15 33 -7.715 -3.228 -0.171 IL 187 187 3 187 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - u - - - ML 188 187 3 190 3 1 1 15 33 -7.944 -0.021 -6.598 0.307 -0.204 -1.001 0.480 D 189 187 3 190 3 0 0 14 32 -8.174 -0.849 -1.180 IL 190 190 3 190 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - u - - - ML 191 190 3 193 3 1 1 13 31 -8.218 -0.017 -6.872 -0.056 -0.484 -0.198 0.537 D 192 190 3 193 3 0 0 13 31 -7.237 -2.751 -0.243 IL 193 193 3 193 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - g - - - ML 194 193 3 196 2 1 1 1 1 * 0.000 0.214 -1.167 0.609 -0.201 D 195 193 3 196 2 0 0 0 0 * 0.000 IL 196 196 3 196 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 197 196 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ncr1241 ACC RF02451 DESC Bacillus sRNA ncr1241 LENG 63 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 22:23:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02451/CM NSEQ 8 EFFN 4.980469 CKSUM 3407072486 STATS LOCAL MSV -7.7739 0.71920 STATS LOCAL VITERBI -8.9033 0.71920 STATS LOCAL FORWARD -3.7705 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.68102 1.38961 1.66722 0.97851 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 0.00000 * 1 1.09447 1.05896 2.45829 1.45721 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 2 1.31270 1.10989 1.82951 1.42370 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 3 1.52334 1.26660 1.55641 1.24016 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 4 0.11067 3.98768 2.73287 3.85399 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 5 0.76132 2.16030 1.67622 1.46717 5 a - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 6 3.21601 4.14248 0.07547 4.09292 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 7 3.21438 4.13992 0.07564 4.08944 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 8 3.93500 0.07019 4.44496 3.31042 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 9 3.51828 3.34072 4.05950 0.08591 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 10 3.51828 3.34072 4.05950 0.08591 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 11 3.51828 3.34072 4.05950 0.08591 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 12 3.93500 0.07019 4.44496 3.31042 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 13 3.51828 3.34072 4.05950 0.08591 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 14 0.05761 4.17873 3.82609 3.97042 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 15 3.60066 4.57584 0.05543 4.11518 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 16 3.51828 3.34072 4.05950 0.08591 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 17 0.05761 4.17873 3.82609 3.97042 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 18 3.51828 3.34072 4.05950 0.08591 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 19 3.51828 3.34072 4.05950 0.08591 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 20 3.93500 0.07019 4.44496 3.31042 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 21 3.93500 0.07019 4.44496 3.31042 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 22 3.93500 0.07019 4.44496 3.31042 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.13289 4.37034 2.19115 1.46634 0.26236 1.09861 0.40547 23 3.72873 0.08558 4.26392 3.12515 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26593 4.26593 1.46634 0.26236 0.20397 1.69002 24 4.21942 0.09241 3.99943 2.89613 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 25 4.21988 0.09239 3.99967 2.89622 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 26 2.20731 1.58412 1.95841 0.60919 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 27 4.03660 3.11995 3.77589 0.08854 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 28 1.56978 1.87840 1.53429 0.85928 28 u - - > 1.38629 1.38629 1.38629 1.38629 0.11246 4.37034 2.36741 1.46634 0.26236 1.09861 0.40547 29 3.36808 3.21130 3.90658 0.09968 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.02791 4.28579 4.28579 1.46634 0.26236 0.23892 1.54870 30 0.97433 2.23947 1.42723 1.28710 30 a - - - 1.38629 1.38629 1.38629 1.38629 0.13848 2.14840 4.37034 1.12838 0.39091 1.09861 0.40547 31 1.67088 2.30652 1.93788 0.56510 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.11521 4.37034 2.34162 1.46634 0.26236 1.09861 0.40547 32 3.36325 3.20716 3.90166 0.10015 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.24953 1.57486 4.28312 0.12836 2.11644 0.23350 1.56906 33 2.05455 2.68025 0.40322 2.00144 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.13832 4.37034 2.14958 1.46634 0.26236 1.09861 0.40547 34 3.05262 3.92134 0.09241 3.85275 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02863 4.26065 4.26065 1.46634 0.26236 0.19643 1.72404 35 0.11331 3.95001 2.72317 3.80740 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 36 3.09351 0.73943 2.88111 0.86464 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 37 1.24896 1.90121 0.78020 2.24908 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 38 1.00612 0.88954 2.35604 2.05007 42 c - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 39 1.30475 2.43242 0.71137 1.89737 43 g - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 40 0.80651 1.61399 1.52704 1.98546 44 a - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 41 1.26661 1.24202 2.04732 1.20285 45 u - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 42 2.21746 0.92467 1.09609 1.83084 46 c - - < 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 43 1.74116 1.12985 2.60352 0.84960 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.23228 4.37034 1.63668 1.46634 0.26236 1.09861 0.40547 44 0.70819 2.23857 1.76256 1.47295 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.17188 4.16947 1.94871 1.46634 0.26236 2.85585 0.05923 45 1.15528 1.51392 2.18935 1.04130 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03606 4.03365 4.03365 1.46634 0.26236 0.50907 0.91894 46 1.46751 1.75704 1.48852 0.99090 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02863 4.26065 4.26065 1.46634 0.26236 0.19643 1.72404 47 1.26394 2.37481 0.86362 1.59555 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.25919 1.53398 4.37034 1.12186 0.39404 1.09861 0.40547 48 2.05988 1.33608 0.85439 1.69220 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 49 1.58030 2.21597 0.96988 1.18447 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 50 2.21715 2.09286 1.22555 0.74623 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 51 2.04979 0.79054 2.24666 1.16512 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 52 2.29308 2.55362 0.83090 0.95298 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 53 2.47287 1.24512 1.77892 0.77886 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 54 0.94116 3.02474 0.68876 2.82925 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 55 3.78577 3.06636 3.64375 0.10030 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 56 3.65753 0.16215 3.62529 2.33049 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 57 2.75526 0.68834 2.48614 1.04763 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 58 2.76070 1.94388 3.28765 0.27937 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 59 3.51828 3.34072 4.05950 0.08591 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 60 3.51828 3.34072 4.05950 0.08591 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 61 3.51828 3.34072 4.05950 0.08591 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 62 1.90631 2.60010 3.00416 0.31811 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.02562 4.37034 4.37034 1.46634 0.26236 1.09861 0.40547 63 3.51828 3.34072 4.05950 0.08591 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.01289 4.35761 * 1.46634 0.26236 0.00000 * //