INFERNAL1/a [1.1.5 | Sep 2023] NAME SpF36_sRNA ACC RF02433 DESC Streptococcus sRNA SpF36 STATES 157 NODES 39 CLEN 51 W 68 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 19:43:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02433/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.824219 CKSUM 481572403 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 49.00 NC 46.20 EFP7GF -9.5670 0.71953 ECMLC 0.51600 -6.40881 5.45091 1600000 545655 0.002199 ECMGC 0.44453 -11.00241 3.60410 1600000 264211 0.001514 ECMLI 0.52241 -3.69570 7.03369 1600000 326183 0.003679 ECMGI 0.45858 -7.72417 5.86859 1600000 203781 0.001963 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 68 88 -7.275 -7.482 -0.042 -5.896 IL 1 1 2 1 4 1 3 72 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 4 68 88 -8.270 -0.017 -6.924 -2.491 1.777 -3.319 -1.758 D 4 2 3 5 3 0 0 66 86 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 2 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 3 67 87 -8.270 -0.017 -6.924 -2.217 -3.525 1.834 -2.910 D 7 5 3 8 3 0 0 65 85 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 2 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 3 66 86 -8.642 -0.015 -6.960 1.824 -2.991 -2.562 -2.597 D 10 8 3 11 3 0 0 64 84 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 1 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 55 - U - - MR 12 11 3 14 3 1 2 65 85 -8.642 -0.015 -6.960 -0.014 -1.062 -1.436 1.112 D 13 11 3 14 3 0 0 63 83 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 1 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 54 - A - - MR 15 14 3 17 3 1 2 64 84 -8.642 -0.015 -6.960 1.260 -1.758 -0.178 -1.232 D 16 14 3 17 3 0 0 62 82 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 1 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 53 - U - - MR 18 17 3 20 3 1 2 63 83 -8.642 -0.015 -6.960 -2.066 -1.964 -2.824 1.750 D 19 17 3 20 3 0 0 61 81 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 1 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 52 - a - - MR 21 20 3 23 3 1 1 62 82 -8.642 -0.015 -6.960 0.578 -0.127 -1.126 0.181 D 22 20 3 23 3 0 0 60 80 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 1 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 51 - A - - MR 24 23 3 26 3 1 1 61 81 -8.642 -0.015 -6.960 1.824 -2.991 -2.562 -2.597 D 25 23 3 26 3 0 0 59 79 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 1 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 50 - A - - MR 27 26 3 29 3 1 1 60 80 -8.642 -0.015 -6.960 1.824 -2.991 -2.562 -2.597 D 28 26 3 29 3 0 0 58 78 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 1 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 49 - A - - MR 30 29 3 32 3 1 1 59 79 -8.642 -0.015 -6.960 1.824 -2.991 -2.562 -2.597 D 31 29 3 32 3 0 0 57 77 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 1 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 48 - A - - MR 33 32 3 35 3 1 1 58 78 -8.642 -0.015 -6.960 1.260 -1.758 -0.178 -1.232 D 34 32 3 35 3 0 0 56 76 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 47 - G - - MR 36 35 3 38 3 1 1 57 77 -8.642 -0.015 -6.960 -0.766 -1.521 1.120 -0.169 D 37 35 3 38 3 0 0 55 75 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 46 - A - - MR 39 38 3 41 3 1 1 56 76 -8.642 -0.015 -6.960 1.167 -0.352 -1.381 -0.767 D 40 38 3 41 3 0 0 54 74 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 45 - U - - MR 42 41 3 44 3 1 1 55 75 -8.642 -0.015 -6.960 -2.066 -1.964 -2.824 1.750 D 43 41 3 44 3 0 0 53 73 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 44 - U - - MR 45 44 3 47 3 1 1 54 74 -2.681 -0.850 -1.790 -2.066 -1.964 -2.824 1.750 D 46 44 3 47 3 0 0 50 70 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 55 75 -1.346 -0.782 -5.316 0.000 0.000 0.000 0.000 [ MATR 16 ] - 41 - a - - MR 48 47 3 50 3 1 1 50 69 -8.166 -0.021 -6.484 0.579 -0.767 -0.944 0.485 D 49 47 3 50 3 0 0 47 66 -8.338 -3.516 -0.137 IR 50 50 3 50 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 40 - U - - MR 51 50 3 53 3 1 1 49 68 -8.166 -0.021 -6.484 -1.121 -1.184 -1.833 1.495 D 52 50 3 53 3 0 0 47 66 -8.338 -3.516 -0.137 IR 53 53 3 53 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 39 - u - - MR 54 53 3 56 5 1 1 48 67 -6.918 -0.044 -6.733 -6.946 -7.837 -0.270 -0.854 0.342 0.433 D 55 53 3 56 5 0 0 47 66 -6.732 -0.233 -4.358 -5.789 -3.784 IR 56 56 3 56 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 4 38 u u - - MP 57 56 3 61 6 2 2 47 66 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -3.598 -3.552 -3.529 -0.111 -2.701 -4.143 1.435 -3.342 -3.568 0.036 -3.974 -1.680 0.721 -3.810 1.479 2.539 ML 58 56 3 61 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 47 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 5 37 A U - - MP 63 62 6 67 6 2 2 45 64 -3.798 -9.180 -0.126 -7.957 -8.237 -8.632 -4.371 -3.268 -4.332 3.607 -4.982 -6.116 -0.642 -4.333 -4.217 0.450 -4.793 -0.662 -1.056 -5.194 -2.580 -3.144 ML 64 62 6 67 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 41 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 44 63 -3.392 -3.655 -0.383 -5.310 -6.086 -5.746 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 7 36 A U - - MP 69 68 6 73 6 2 2 43 61 -3.878 -9.180 -0.120 -7.957 -8.237 -8.632 -4.371 -3.268 -4.332 3.607 -4.982 -6.116 -0.642 -4.333 -4.217 0.450 -4.793 -0.662 -1.056 -5.194 -2.580 -3.144 ML 70 68 6 73 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 42 61 -3.357 -3.620 -0.394 -5.275 -6.051 -5.712 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 9 35 A U - - MP 75 74 6 79 6 2 2 41 59 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.371 -3.268 -4.332 3.607 -4.982 -6.116 -0.642 -4.333 -4.217 0.450 -4.793 -0.662 -1.056 -5.194 -2.580 -3.144 ML 76 74 6 79 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 10 34 A U - - MP 81 80 6 85 6 2 2 39 57 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.371 -3.268 -4.332 3.607 -4.982 -6.116 -0.642 -4.333 -4.217 0.450 -4.793 -0.662 -1.056 -5.194 -2.580 -3.144 ML 82 80 6 85 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 11 33 U A - - MP 87 86 6 91 6 2 2 37 55 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.963 -4.800 -4.711 -1.049 -3.503 -5.202 0.834 -4.247 -4.711 -0.887 -5.045 -2.675 3.600 -5.078 -1.161 -3.441 ML 88 86 6 91 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 12 32 C G - - MP 93 92 6 97 6 2 2 35 53 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -5.228 -5.191 -4.798 -1.375 -3.385 -5.120 3.716 -4.262 -4.879 -1.213 -5.058 -3.155 0.050 -5.250 -1.116 -3.698 ML 94 92 6 97 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 13 31 U A - - MP 99 98 6 103 6 2 2 33 51 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.963 -4.800 -4.711 -1.049 -3.503 -5.202 0.834 -4.247 -4.711 -0.887 -5.045 -2.675 3.600 -5.078 -1.161 -3.441 ML 100 98 6 103 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 14 30 G C - - MP 105 104 6 109 6 2 2 30 49 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -5.339 -3.384 -5.519 -0.213 -6.067 -4.918 -1.282 -5.786 -4.695 3.754 -4.994 -1.113 -1.654 -4.853 -3.356 -4.387 ML 106 104 6 109 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 15 29 A U - - MP 111 110 6 115 6 2 2 28 47 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.371 -3.268 -4.332 3.607 -4.982 -6.116 -0.642 -4.333 -4.217 0.450 -4.793 -0.662 -1.056 -5.194 -2.580 -3.144 ML 112 110 6 115 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 16 28 U G - - MP 117 116 6 121 6 2 2 26 45 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.714 -4.658 -4.274 -0.938 -2.862 -4.602 1.434 -3.685 -4.322 -0.849 -4.552 -2.644 0.508 -4.737 3.324 -3.164 ML 118 116 6 121 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 17 27 U A - - MP 123 122 6 127 6 2 2 24 43 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.963 -4.800 -4.711 -1.049 -3.503 -5.202 0.834 -4.247 -4.711 -0.887 -5.045 -2.675 3.600 -5.078 -1.161 -3.441 ML 124 122 6 127 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 18 26 A U - - MP 129 128 6 133 6 2 2 22 41 -9.241 -9.180 -0.019 -7.957 -8.237 -8.632 -4.371 -3.268 -4.332 3.607 -4.982 -6.116 -0.642 -4.333 -4.217 0.450 -4.793 -0.662 -1.056 -5.194 -2.580 -3.144 ML 130 128 6 133 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 19 25 C G - - MP 135 134 6 139 4 2 2 20 39 -7.275 -7.482 -0.042 -5.896 -5.228 -5.191 -4.798 -1.375 -3.385 -5.120 3.716 -4.262 -4.879 -1.213 -5.058 -3.155 0.050 -5.250 -1.116 -3.698 ML 136 134 6 139 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 20 - A - - - ML 141 140 6 143 3 1 1 17 36 -8.270 -0.017 -6.924 1.824 -2.991 -2.562 -2.597 D 142 140 6 143 3 0 0 17 36 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 21 - A - - - ML 144 143 3 146 3 1 1 16 35 -8.270 -0.017 -6.924 1.824 -2.991 -2.562 -2.597 D 145 143 3 146 3 0 0 16 34 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 22 - G - - - ML 147 146 3 149 3 1 1 15 33 -8.270 -0.017 -6.924 -2.217 -3.525 1.834 -2.910 D 148 146 3 149 3 0 0 15 33 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 23 - A - - - ML 150 149 3 152 3 1 1 13 31 -8.270 -0.017 -6.924 1.824 -2.991 -2.562 -2.597 D 151 149 3 152 3 0 0 13 32 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 24 - U - - - ML 153 152 3 155 2 1 1 1 1 * 0.000 -2.066 -1.964 -2.824 1.750 D 154 152 3 155 2 0 0 0 0 * 0.000 IL 155 155 3 155 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 156 155 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SpF36_sRNA ACC RF02433 DESC Streptococcus sRNA SpF36 LENG 51 MAXL 128 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 19:43:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02433/CM NSEQ 4 EFFN 3.550781 CKSUM 481572403 STATS LOCAL MSV -7.7564 0.71953 STATS LOCAL VITERBI -8.1717 0.71953 STATS LOCAL FORWARD -3.8761 0.71953 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.04817 1.98671 1.67006 1.12689 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 0.00000 * 1 3.45076 0.11170 4.01021 2.88535 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 2 3.20005 4.13688 0.08489 3.70289 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 3 0.09045 3.74431 3.42233 3.50025 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 4 2.85594 1.81994 2.69411 0.33847 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 5 0.18863 3.39205 2.29480 3.28385 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.20967 1.75598 4.10998 0.18022 1.80234 1.09861 0.40547 6 0.18860 3.39230 2.29486 3.28416 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.21084 1.75048 4.10998 0.17928 1.80711 1.09861 0.40547 7 0.18861 3.39222 2.29484 3.28407 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 8 0.18737 3.40176 2.29722 3.29653 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 9 3.56501 2.38653 3.39214 0.16710 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 10 3.70362 0.14271 3.54999 2.53029 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 11 3.57436 2.38750 3.39708 0.16648 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 12 2.90928 3.72580 0.11016 3.66113 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 13 0.18598 3.41262 2.29990 3.31074 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 14 3.35905 1.83949 3.21255 0.26647 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 15 3.57940 2.38802 3.39974 0.16616 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 16 0.18586 3.41359 2.30014 3.31203 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 17 3.71446 0.14202 3.55592 2.53239 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 18 0.09045 3.74431 3.42233 3.50025 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 19 0.09045 3.74431 3.42233 3.50025 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 20 3.20005 4.13688 0.08489 3.70289 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 21 0.09045 3.74431 3.42233 3.50025 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 22 3.09356 2.97811 3.62621 0.13107 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 23 2.80995 3.71913 0.12226 3.48618 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 24 3.52217 2.65126 3.21926 0.15092 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 25 0.18854 3.59062 2.22329 3.32414 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 26 2.42353 3.39500 0.18313 3.09693 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 27 3.51987 2.65086 3.21822 0.15108 29 U - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 28 3.82291 0.13249 3.57129 2.60233 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 29 0.18884 3.58771 2.22279 3.32100 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 30 2.80619 3.71320 0.12291 3.47954 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 31 0.18926 3.58373 2.22210 3.31671 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 32 3.50388 2.64808 3.21097 0.15220 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 33 3.49377 2.64630 3.20635 0.15292 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 34 3.50263 2.64786 3.21039 0.15229 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 35 3.51810 2.65056 3.21742 0.15120 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 36 2.29421 2.90330 1.05628 0.70003 38 u - - > 1.38629 1.38629 1.38629 1.38629 0.41401 4.10998 1.13134 1.46634 0.26236 1.09861 0.40547 37 1.62642 2.03515 1.10818 1.07135 39 u - - : 1.38629 1.38629 1.38629 1.38629 0.04845 3.74442 3.74442 1.46634 0.26236 3.07551 0.04727 38 2.35238 2.36115 2.85752 0.28351 40 U - - : 1.38629 1.38629 1.38629 1.38629 0.04845 3.74442 3.74442 1.46634 0.26236 3.07551 0.04727 39 0.96640 1.96441 2.09442 1.03235 41 a - - : 1.38629 1.38629 1.38629 1.38629 0.35713 1.28493 3.74442 0.75326 0.63645 0.09688 2.38236 40 3.09356 2.97811 3.62621 0.13107 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 41 3.09356 2.97811 3.62621 0.13107 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 42 0.52809 1.62378 2.47357 2.04924 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 43 2.04883 2.58451 0.54335 1.53767 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 44 0.46993 2.77074 1.49790 2.42207 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 45 0.09045 3.74431 3.42233 3.50025 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 46 0.09045 3.74431 3.42233 3.50025 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 47 0.09045 3.74431 3.42233 3.50025 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 48 0.96442 1.46098 2.23424 1.27399 52 a - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 49 3.09356 2.97811 3.62621 0.13107 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 50 0.46993 2.77074 1.49790 2.42207 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 51 1.41441 2.23046 2.49542 0.56742 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.01682 4.09343 * 1.46634 0.26236 0.00000 * //