INFERNAL1/a [1.1.5 | Sep 2023] NAME Spd-sr37 ACC RF02419 DESC Streptococcus sRNA Spd-sr37 STATES 205 NODES 57 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 08:21:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02419/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 25 EFFN 2.749634 CKSUM 3785478701 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 48.10 NC 44.50 EFP7GF -11.0532 0.71909 ECMLC 0.54795 -9.81161 1.61546 1600000 628768 0.001908 ECMGC 0.41029 -15.93461 -1.92352 1600000 125503 0.003187 ECMLI 0.50455 -8.39847 2.88684 1600000 356501 0.003366 ECMGI 0.41632 -11.64794 1.06175 1600000 79440 0.005035 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -7.250 -7.457 -0.110 -4.029 IL 1 1 2 1 4 1 21 86 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 3 - C - - - ML 3 2 3 5 3 1 20 82 102 -8.186 -0.018 -6.840 -0.947 1.348 -2.016 -0.539 D 4 2 3 5 3 0 16 81 101 -6.728 -0.915 -1.119 IL 5 5 3 5 3 1 20 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 4 - A - - - ML 6 5 3 8 3 1 20 81 101 -8.247 -0.017 -6.901 1.650 -2.114 -1.966 -1.418 D 7 5 3 8 3 0 14 80 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 5 - A - - - ML 9 8 3 11 3 1 19 80 100 -8.247 -0.017 -6.901 1.817 -2.944 -2.520 -2.545 D 10 8 3 11 3 0 13 79 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 6 - U - - - ML 12 11 3 14 3 1 18 79 99 -8.247 -0.017 -6.901 -0.642 -1.135 -1.428 1.340 D 13 11 3 14 3 0 13 78 98 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 7 - A - - - ML 15 14 3 17 3 1 17 78 98 -8.247 -0.058 -4.796 1.274 -1.117 -1.380 -0.443 D 16 14 3 17 3 0 12 77 97 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 17 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 8 - a - - - ML 18 17 3 20 3 1 17 77 97 -8.206 -0.017 -6.860 0.582 -0.991 0.308 -0.392 D 19 17 3 20 3 0 11 76 96 -6.565 -1.077 -0.956 IL 20 20 3 20 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 9 - u - - - ML 21 20 3 23 3 1 16 76 96 -8.247 -0.017 -6.901 -0.118 0.084 -1.025 0.611 D 22 20 3 23 3 0 9 75 95 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - c - - - ML 24 23 3 26 3 1 15 75 95 -8.247 -0.017 -6.901 0.107 0.257 -0.724 0.167 D 25 23 3 26 3 0 8 74 94 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - A - - - ML 27 26 3 29 3 1 14 74 94 -8.247 -0.017 -6.901 1.677 -2.343 -1.550 -1.923 D 28 26 3 29 3 0 8 73 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - U - - - ML 30 29 3 32 3 1 13 73 93 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 31 29 3 32 3 0 7 72 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 13 - G - - - ML 33 32 3 35 3 1 13 72 92 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 34 32 3 35 3 0 7 71 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 11 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - A - - - ML 36 35 3 38 3 1 12 71 91 -8.247 -0.017 -6.901 1.817 -2.944 -2.520 -2.545 D 37 35 3 38 3 0 6 70 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 10 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - U - - - ML 39 38 3 41 3 1 11 70 89 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 40 38 3 41 3 0 5 69 88 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 10 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 16 - G - - - ML 42 41 3 44 3 1 11 69 88 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 43 41 3 44 3 0 5 68 87 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 9 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 17 - G - - - ML 45 44 3 47 3 1 10 68 87 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 46 44 3 47 3 0 4 66 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 8 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 18 - U - - - ML 48 47 3 50 3 1 9 67 86 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 49 47 3 50 3 0 4 65 85 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 8 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 19 - C - - - ML 51 50 3 53 3 1 9 66 85 -8.247 -0.017 -6.901 -2.435 1.768 -3.264 -1.712 D 52 50 3 53 3 0 3 64 84 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 7 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 20 - A - - - ML 54 53 3 56 5 1 8 65 84 -7.343 -0.163 -3.449 -7.370 -8.262 1.817 -2.944 -2.520 -2.545 D 55 53 3 56 5 0 3 63 83 -4.959 -0.803 -4.221 -2.596 -2.508 IL 56 56 3 56 5 1 6 65 84 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 21 69 A U - - MP 57 56 3 61 6 2 10 64 83 -9.166 -9.105 -0.020 -7.882 -8.162 -8.557 -4.048 -3.016 -4.045 3.475 -4.515 -5.604 -0.197 -4.070 -3.929 0.801 -4.489 -0.452 -0.614 -4.747 -2.137 -2.866 ML 58 56 3 61 6 1 5 62 82 -6.954 -7.301 -0.925 -1.276 -7.150 -4.680 1.141 -1.024 -0.771 -0.479 MR 59 56 3 61 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 6 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 22 68 A U - - MP 63 62 6 67 6 2 9 62 81 -9.213 -9.152 -0.020 -7.929 -8.208 -8.603 -4.250 -3.173 -4.226 3.563 -4.806 -5.922 -0.475 -4.236 -4.109 0.582 -4.679 -0.582 -0.890 -5.026 -2.414 -3.040 ML 64 62 6 67 6 1 4 60 80 -6.482 -6.828 -1.023 -1.237 -6.678 -4.208 0.756 -0.653 -0.369 -0.150 MR 65 62 6 67 6 1 4 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 5 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 5 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 23 67 G U - - MP 69 68 6 73 6 2 9 60 79 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -3.981 -2.663 -4.171 0.882 -5.175 -5.941 -0.723 -4.156 -3.757 0.862 -4.304 3.382 -1.066 -5.037 -2.661 -2.810 ML 70 68 6 73 6 1 4 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 4 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 5 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 5 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 24 66 C G - - MP 75 74 6 79 6 2 8 58 77 -9.230 -9.170 -0.033 -6.223 -8.226 -8.621 -3.874 -3.908 -3.905 -0.508 -3.248 -2.660 3.547 -2.396 -3.959 -0.369 -4.379 -2.150 0.266 -4.122 -1.134 -2.973 ML 76 74 6 79 6 1 3 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 3 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 4 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 4 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 25 65 u a - - MP 81 80 6 85 6 2 7 56 75 -9.217 -9.156 -0.020 -7.933 -8.212 -8.607 -3.753 -3.754 -3.647 -0.095 -2.631 -4.223 1.667 -3.337 -3.668 0.084 -4.064 -1.825 2.587 -3.912 1.858 -2.572 ML 82 80 6 85 6 1 3 55 75 -6.433 -6.779 -1.076 -1.188 -6.629 -4.158 0.146 -0.369 -0.440 0.467 MR 83 80 6 85 6 1 2 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 4 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 4 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 26 64 C G - - MP 87 86 6 91 4 2 5 54 73 -7.250 -7.457 -0.043 -5.871 -3.938 -3.961 -3.902 -0.351 -1.530 -4.542 3.442 -2.007 -3.932 -0.219 -4.342 -2.069 0.615 -4.146 -0.790 -2.870 ML 88 86 6 91 4 1 2 54 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 54 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 53 72 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 3 56 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - A - - - ML 93 92 6 95 3 1 4 51 71 -8.247 -0.017 -6.901 1.817 -2.944 -2.520 -2.545 D 94 92 6 95 3 0 0 50 69 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - U - - - ML 96 95 3 98 3 1 4 50 69 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 97 95 3 98 3 0 0 49 68 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - G - - - ML 99 98 3 101 3 1 3 49 68 -8.247 -0.017 -6.901 -2.171 -3.473 1.828 -2.859 D 100 98 3 101 3 0 0 48 67 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 102 101 3 104 3 1 3 48 67 -8.247 -0.017 -6.901 0.119 -1.907 1.170 -1.333 D 103 101 3 104 3 0 0 47 66 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - a - - - ML 105 104 3 107 3 1 3 47 66 -8.247 -0.017 -6.901 0.887 -1.651 0.442 -1.080 D 106 104 3 107 3 0 0 46 65 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - a - - - ML 108 107 3 110 3 1 2 46 65 -8.247 -0.017 -6.901 0.670 -0.942 -0.722 0.358 D 109 107 3 110 3 0 0 45 64 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - a - - - ML 111 110 3 113 3 1 2 45 64 -8.247 -0.017 -6.901 0.780 -1.389 0.354 -0.681 D 112 110 3 113 3 0 0 44 63 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - U - - - ML 114 113 3 116 3 1 1 44 63 -8.620 -0.016 -6.938 -2.022 -1.927 -2.778 1.742 D 115 113 3 116 3 0 0 43 62 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 63 - a - - MR 117 116 3 119 3 1 1 43 62 -8.620 -0.043 -5.219 0.990 -0.366 -0.838 -0.561 D 118 116 3 119 3 0 0 41 60 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 62 - g - - MR 120 119 3 122 3 1 1 42 61 -8.593 -0.016 -6.911 -0.113 -1.100 0.614 0.109 D 121 119 3 122 3 0 0 40 59 -6.638 -1.178 -0.867 IR 122 122 3 122 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 61 - c - - MR 123 122 3 125 3 1 1 41 60 -8.620 -0.016 -6.938 -0.454 0.818 -1.273 0.129 D 124 122 3 125 3 0 0 39 58 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 60 - U - - MR 126 125 3 128 3 1 1 40 59 -8.620 -0.016 -6.938 -1.552 -1.221 -2.295 1.597 D 127 125 3 128 3 0 0 38 57 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 59 - U - - MR 129 128 3 131 3 1 1 39 58 -8.620 -0.016 -6.938 -0.985 0.158 -1.765 1.060 D 130 128 3 131 3 0 0 37 56 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 58 - U - - MR 132 131 3 134 3 1 1 38 57 -8.620 -0.016 -6.938 -1.398 -0.932 -2.143 1.521 D 133 131 3 134 3 0 0 36 55 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 57 - U - - MR 135 134 3 137 3 1 1 37 56 -8.620 -0.016 -6.938 -1.520 -1.165 -2.264 1.584 D 136 134 3 137 3 0 0 35 54 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 56 - a - - MR 138 137 3 140 5 1 1 36 55 -7.343 -0.033 -7.158 -7.370 -8.262 0.452 0.003 -0.259 -0.332 D 139 137 3 140 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 35 55 U A - - MP 141 140 3 145 6 2 2 35 54 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -4.630 -4.586 -4.426 -0.841 -3.252 -4.924 1.086 -4.004 -4.443 -0.636 -4.794 -2.580 3.485 -4.731 -0.409 -3.215 ML 142 140 3 145 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 36 54 G C - - MP 147 146 6 151 6 2 2 33 52 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -5.294 -3.362 -5.467 -0.181 -6.006 -4.902 -1.232 -5.733 -4.669 3.747 -4.971 -1.088 -1.604 -4.824 -3.303 -4.335 ML 148 146 6 151 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 37 53 u a - - MP 153 152 6 157 6 2 2 31 50 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -3.629 -3.602 -3.577 0.121 -2.618 -4.220 2.373 -3.294 -3.575 0.303 -4.009 -1.609 2.395 -3.811 0.962 -2.470 ML 154 152 6 157 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 38 52 a u - - MP 159 158 6 163 6 2 2 29 48 -9.230 -9.170 -0.019 -7.946 -8.226 -8.621 -3.245 -2.494 -3.322 2.717 -3.694 -4.336 0.407 -3.604 -3.347 1.866 -3.858 0.758 0.154 -3.541 -1.436 -1.196 ML 160 158 6 163 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 39 51 g c - - MP 165 164 6 169 6 2 2 27 46 -9.230 -9.170 -0.039 -5.858 -8.226 -8.621 -1.955 -1.967 -1.182 1.208 -2.132 -2.945 1.577 -2.464 -1.606 2.080 -1.833 -0.359 1.108 -2.233 -0.264 -1.335 ML 166 164 6 169 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 40 50 G C - - MP 171 170 6 175 4 2 2 25 44 -7.205 -7.412 -0.081 -4.585 -4.917 -3.173 -5.025 0.116 -5.780 -4.819 -1.002 -5.384 -4.494 3.667 -4.819 -0.426 -1.301 -4.583 -3.050 -3.905 ML 172 170 6 175 4 1 1 25 45 -3.950 -4.132 -0.433 -2.862 0.202 -0.673 0.413 -0.166 MR 173 170 6 175 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 41 - u - - - ML 177 176 6 179 3 1 1 22 41 -8.215 -0.292 -2.473 -0.919 0.405 -1.712 0.881 D 178 176 6 179 3 0 0 21 40 -6.492 -2.005 -0.435 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 42 - u - - - ML 180 179 3 182 3 1 1 21 40 -7.943 -0.058 -4.834 -0.690 0.330 -1.459 0.815 D 181 179 3 182 3 0 0 20 39 -7.822 -0.551 -1.675 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 43 - U - - - ML 183 182 3 185 3 1 1 20 38 -8.177 -0.018 -6.831 -1.252 -0.777 -1.996 1.457 D 184 182 3 185 3 0 0 19 38 -6.789 -1.313 -0.765 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 44 - U - - - ML 186 185 3 188 3 1 1 19 37 -8.218 -0.017 -6.872 -1.506 -1.190 -2.249 1.585 D 187 185 3 188 3 0 0 18 37 -6.467 -1.193 -0.859 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 45 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.247 -0.082 -4.261 -2.022 -1.927 -2.778 1.742 D 190 188 3 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 46 - U - - - ML 192 191 3 194 3 1 1 16 35 -8.182 -0.018 -6.836 -1.898 -1.823 -2.649 1.718 D 193 191 3 194 3 0 0 15 34 -6.752 -0.894 -1.144 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 47 - U - - - ML 195 194 3 197 3 1 1 15 33 -8.247 -0.017 -6.901 -2.022 -1.927 -2.778 1.742 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 48 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.247 -0.147 -3.421 -2.171 -3.473 1.828 -2.859 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 49 - u - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -0.110 -0.538 -0.706 0.825 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Spd-sr37 ACC RF02419 DESC Streptococcus sRNA Spd-sr37 LENG 67 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 08:21:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02419/CM NSEQ 25 EFFN 3.482056 CKSUM 3785478701 STATS LOCAL MSV -8.0062 0.71909 STATS LOCAL VITERBI -8.9769 0.71909 STATS LOCAL FORWARD -3.7250 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40003 1.71965 1.43750 1.08838 1.38629 1.38629 1.38629 1.38629 0.17177 2.33830 2.79136 0.80851 0.58973 0.00000 * 1 2.17909 0.38327 2.98011 1.86794 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03357 4.10397 4.10397 1.46634 0.26236 0.41456 1.08067 2 0.20005 3.03468 2.94399 2.51872 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 3 0.09284 3.71951 3.39958 3.47302 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 4 1.92458 2.30219 2.48629 0.39928 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 5 0.45536 2.23155 2.46518 1.75202 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.06379 4.15062 3.07807 1.46634 0.26236 1.09861 0.40547 6 0.97158 2.12451 1.13578 1.71006 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.03303 4.11986 4.11986 1.46634 0.26236 0.52133 0.90073 7 1.49069 1.30267 2.14219 0.95300 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 8 1.32234 1.17232 1.91042 1.28800 10 c - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 9 0.18402 3.22028 2.57219 2.96089 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 10 3.06945 2.95779 3.60151 0.13429 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 11 3.17644 4.11087 0.08709 3.67784 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 12 0.09284 3.71951 3.39958 3.47302 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 13 3.06945 2.95779 3.60151 0.13429 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 14 3.17644 4.11087 0.08709 3.67784 16 G - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 15 3.17644 4.11087 0.08709 3.67784 17 G - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 16 3.06945 2.95779 3.60151 0.13429 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 17 3.42184 0.11484 3.98316 2.86094 19 C - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 18 0.09284 3.71951 3.39958 3.47302 20 A - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 19 0.26793 2.98746 2.07059 2.83857 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 20 0.21977 3.21038 2.19934 3.07741 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 21 2.13036 3.30451 0.22273 3.11994 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 22 3.07771 0.21359 2.93235 2.37536 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 23 2.76422 1.64633 2.58499 0.40224 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 24 2.94989 0.26994 2.78099 2.10167 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 25 0.09284 3.71951 3.39958 3.47302 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 26 3.06945 2.95779 3.60151 0.13429 28 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 27 3.17644 4.11087 0.08709 3.67784 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 28 1.32057 2.87709 0.52096 2.49173 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 29 0.73477 2.69215 1.04094 2.30730 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 30 0.89638 2.10573 1.91623 1.12998 32 a - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 31 0.81954 2.45852 1.10466 1.94853 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 32 3.06945 2.95779 3.60151 0.13429 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 33 3.43170 2.17721 3.22994 0.20487 35 U - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 34 2.90177 3.71511 0.11110 3.65473 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 35 2.58914 1.07398 2.36548 0.71464 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 36 0.74748 2.53440 1.09012 2.19861 38 a - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 37 1.59097 1.51978 1.01924 1.52950 39 g - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 38 2.63934 3.47875 0.14789 3.34604 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.05716 4.15062 3.22387 1.46634 0.26236 1.09861 0.40547 39 2.15952 1.06436 2.72226 0.74666 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24941 4.12628 1.58670 1.46634 0.26236 1.50990 0.24966 40 1.96790 1.11793 2.51251 0.79356 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06990 3.91746 3.04456 1.46634 0.26236 0.27468 1.42635 41 2.43550 1.99350 2.95516 0.32275 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03379 4.09748 4.09748 1.46634 0.26236 0.77651 0.61620 42 2.63588 2.32624 3.15346 0.23829 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03275 4.12842 4.12842 1.46634 0.26236 0.60730 0.78706 43 3.06945 2.95779 3.60151 0.13429 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08285 4.15062 2.75268 1.46634 0.26236 1.09861 0.40547 44 2.97626 2.87946 3.50591 0.14753 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03366 4.10143 4.10143 1.46634 0.26236 0.40160 1.10639 45 3.06945 2.95779 3.60151 0.13429 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 46 3.17644 4.11087 0.08709 3.67784 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.13317 4.15062 2.21704 1.46634 0.26236 1.09861 0.40547 47 1.48306 1.78807 1.89017 0.78805 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07199 4.05281 2.95479 1.46634 0.26236 0.25407 1.49450 48 3.60921 0.18454 3.36315 2.23663 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03307 4.11863 4.11863 1.46634 0.26236 0.51106 0.91594 49 1.70673 1.17184 1.25631 1.49592 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 50 2.60103 1.46309 2.33870 0.51445 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 51 1.00462 2.53700 0.77582 2.36036 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 52 3.84557 0.13268 3.56871 2.59440 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 53 0.25076 3.40506 1.91173 3.19997 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 54 1.06248 1.35551 1.55931 1.68035 56 a - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 55 2.64600 2.30381 3.16383 0.23962 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 56 2.55054 2.11487 3.06966 0.28120 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 57 2.21474 1.25252 2.76585 0.61228 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 58 2.67043 2.34914 3.18829 0.23057 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 59 1.76926 0.76047 2.35078 1.32125 61 c - - - 1.38629 1.38629 1.38629 1.38629 0.05464 4.15062 3.28554 1.46634 0.26236 1.09861 0.40547 60 1.50348 2.23002 0.90765 1.32183 62 g - - - 1.38629 1.38629 1.38629 1.38629 0.03274 4.12872 4.12872 1.46634 0.26236 0.61087 0.78280 61 0.65725 1.63395 2.01983 1.87150 63 A - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 62 2.19807 2.96253 0.27204 2.58397 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.05528 4.15062 3.26941 1.46634 0.26236 1.09861 0.40547 63 0.86120 2.76406 0.82565 2.57230 65 g - - > 1.38629 1.38629 1.38629 1.38629 0.03276 4.12809 4.12809 1.46634 0.26236 0.60353 0.79160 64 2.62191 2.95279 0.20707 2.77770 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15062 4.15062 1.46634 0.26236 1.09861 0.40547 65 3.38483 2.29500 3.15086 0.19536 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.06222 4.15062 3.11082 1.46634 0.26236 1.09861 0.40547 66 3.43067 2.56458 3.11641 0.16680 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.11619 4.12139 2.37012 1.46634 0.26236 1.57457 0.23205 67 3.23923 2.39560 2.91173 0.20419 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.02326 * 1.46634 0.26236 0.00000 * //