INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrD_leader ACC RF02373 DESC PyrD leader STATES 226 NODES 70 CLEN 74 W 90 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 23:31:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02373/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 27 EFFN 2.488403 CKSUM 2806110341 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.80 NC 46.90 EFP7GF -9.1566 0.71880 ECMLC 0.50142 -10.99227 1.71709 1600000 702827 0.001707 ECMGC 0.43826 -15.34205 -2.94007 1600000 91745 0.004360 ECMLI 0.50099 -7.57184 3.99801 1600000 394921 0.003039 ECMGI 0.49228 -9.49448 0.84747 1600000 65027 0.006151 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 110 -7.160 -7.368 -0.074 -4.755 IL 1 1 2 1 4 1 30 94 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 93 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 30 90 110 -8.137 -0.018 -6.791 1.784 -2.722 -2.319 -2.300 D 4 2 3 5 3 0 24 88 108 -6.422 -1.935 -0.460 IL 5 5 3 5 3 1 29 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 29 89 109 -8.137 -0.018 -6.791 -1.811 -1.751 -2.559 1.700 D 7 5 3 8 3 0 24 87 107 -6.422 -1.254 -0.814 IL 8 8 3 8 3 1 28 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 28 88 108 -8.163 -0.018 -6.817 -1.860 -1.792 -2.610 1.710 D 10 8 3 11 3 0 23 86 106 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 27 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 28 87 107 -8.163 -0.018 -6.817 -2.229 1.733 -3.060 -1.545 D 13 11 3 14 3 0 22 85 105 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 27 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 27 86 105 -8.163 -0.018 -6.817 -1.360 1.557 -2.407 -1.064 D 16 14 3 17 3 0 21 84 104 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 26 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 26 85 104 -8.163 -0.018 -6.817 -0.079 1.001 -1.567 -0.485 D 19 17 3 20 3 0 20 83 103 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 25 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 25 84 103 -8.163 -0.018 -6.817 -0.097 -1.011 -1.406 1.132 D 22 20 3 23 3 0 19 82 102 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 24 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 24 83 102 -8.163 -0.018 -6.817 -1.860 -1.792 -2.610 1.710 D 25 23 3 26 3 0 19 81 101 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 24 82 101 -8.163 -0.018 -6.817 -1.860 -1.792 -2.610 1.710 D 28 26 3 29 3 0 18 80 100 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 23 80 100 -8.163 -0.018 -6.817 -0.398 0.204 -0.454 0.443 D 31 29 3 32 3 0 17 79 99 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 22 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 1 22 79 99 -8.163 -0.018 -6.817 0.277 -0.611 0.067 0.120 D 34 32 3 35 3 0 16 78 98 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 21 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - g - - - ML 36 35 3 38 3 1 21 78 98 -8.163 -0.018 -6.817 -0.228 -0.297 0.306 0.133 D 37 35 3 38 3 0 16 77 97 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - u - - - ML 39 38 3 41 3 1 21 77 97 -8.163 -0.018 -6.817 -0.085 0.097 -0.125 0.098 D 40 38 3 41 3 0 15 76 96 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 1 20 76 96 -5.623 -0.043 -6.817 0.149 -0.029 -0.460 0.244 D 43 41 3 44 3 0 14 75 94 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 78 98 -1.505 -0.753 -4.205 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - c - - - ML 45 44 3 47 3 1 19 75 95 -8.163 -0.018 -6.817 -0.284 0.276 0.013 -0.061 D 46 44 3 47 3 0 13 74 93 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - g - - - ML 48 47 3 50 3 1 18 74 93 -8.163 -0.018 -6.817 -0.108 -0.789 0.795 -0.399 D 49 47 3 50 3 0 12 73 92 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - a - - - ML 51 50 3 53 3 1 18 73 92 -8.163 -0.018 -6.817 0.517 -0.419 -0.222 -0.052 D 52 50 3 53 3 0 12 72 91 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - g - - - ML 54 53 3 56 3 1 17 72 91 -8.163 -0.018 -6.817 0.025 -0.559 0.407 -0.032 D 55 53 3 56 3 0 11 71 90 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - a - - - ML 57 56 3 59 3 1 16 71 90 -8.163 -0.018 -6.817 0.937 -0.502 -1.140 -0.112 D 58 56 3 59 3 0 10 69 89 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - U - - - ML 60 59 3 62 3 1 15 70 89 -8.163 -0.018 -6.817 -1.860 -1.792 -2.610 1.710 D 61 59 3 62 3 0 9 68 88 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - c - - - ML 63 62 3 65 3 1 15 69 88 -8.163 -0.018 -6.817 -0.023 0.602 -0.565 -0.282 D 64 62 3 65 3 0 8 67 87 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - g - - - ML 66 65 3 68 3 1 14 68 87 -8.163 -0.018 -6.817 -0.391 -0.430 0.889 -0.636 D 67 65 3 68 3 0 8 66 86 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - C - - - ML 69 68 3 71 3 1 13 67 86 -8.163 -0.018 -6.817 -0.163 1.056 -1.617 -0.510 D 70 68 3 71 3 0 7 65 85 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 72 71 3 74 3 1 12 66 85 -8.163 -0.018 -6.817 0.571 -0.292 -0.575 0.038 D 73 71 3 74 3 0 6 64 84 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - c - - - ML 75 74 3 77 3 1 12 64 84 -8.163 -0.018 -6.817 -0.478 0.401 0.285 -0.428 D 76 74 3 77 3 0 5 63 83 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - - - ML 78 77 3 80 3 1 11 63 83 -8.163 -0.018 -6.817 1.793 -2.774 -2.366 -2.357 D 79 77 3 80 3 0 5 62 81 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 10 62 81 -8.163 -0.018 -6.817 -1.860 -1.792 -2.610 1.710 D 82 80 3 83 3 0 4 61 80 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - A - - - ML 84 83 3 86 3 1 9 61 80 -8.163 -0.018 -6.817 1.793 -2.774 -2.366 -2.357 D 85 83 3 86 3 0 3 60 79 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 8 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 87 86 3 89 3 1 9 60 79 -8.163 -0.018 -6.817 1.793 -2.774 -2.366 -2.357 D 88 86 3 89 3 0 3 59 78 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 90 89 3 92 3 1 8 59 78 -8.163 -0.018 -6.817 -1.860 -1.792 -2.610 1.710 D 91 89 3 92 3 0 2 58 77 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 7 58 77 -8.163 -0.018 -6.817 1.392 -0.943 -1.473 -1.012 D 94 92 3 95 3 0 2 57 76 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - c - - - ML 96 95 3 98 3 1 7 57 76 -8.163 -0.018 -6.817 -0.498 0.949 -0.722 -0.406 D 97 95 3 98 3 0 1 56 75 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 99 98 3 101 3 1 6 56 75 -8.163 -0.018 -6.817 -0.604 -0.528 1.049 -0.786 D 100 98 3 101 3 0 0 55 74 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - c - - - ML 102 101 3 104 3 1 5 55 74 -8.163 -0.018 -6.817 -0.617 0.862 -0.556 -0.233 D 103 101 3 104 3 0 0 54 73 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 4 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 105 104 3 107 3 1 4 54 72 -8.541 -0.016 -6.859 -1.192 1.379 -1.669 -0.629 D 106 104 3 107 3 0 0 52 71 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 3 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 75 - C - - MR 108 107 3 110 3 1 4 53 71 -8.541 -0.016 -6.859 -1.335 1.352 -2.179 -0.270 D 109 107 3 110 3 0 0 51 70 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 2 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 74 - A - - MR 111 110 3 113 3 1 3 52 70 -8.541 -0.016 -6.859 1.366 -1.461 -1.463 -0.521 D 112 110 3 113 3 0 0 50 69 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 2 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 73 - U - - MR 114 113 3 116 3 1 3 51 69 -8.541 -0.016 -6.859 -1.860 -1.792 -2.610 1.710 D 115 113 3 116 3 0 0 49 68 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 72 - G - - MR 117 116 3 119 3 1 2 50 68 -8.541 -0.016 -6.859 -1.999 -3.280 1.803 -2.667 D 118 116 3 119 3 0 0 48 67 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 71 - U - - MR 120 119 3 122 3 1 2 49 67 -8.541 -0.016 -6.859 -1.860 -1.792 -2.610 1.710 D 121 119 3 122 3 0 0 47 66 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 70 - A - - MR 123 122 3 125 3 1 2 48 66 -8.541 -0.016 -6.859 1.793 -2.774 -2.366 -2.357 D 124 122 3 125 3 0 0 46 65 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 69 - C - - MR 126 125 3 128 3 1 1 47 65 -8.541 -0.016 -6.859 -2.229 1.733 -3.060 -1.545 D 127 125 3 128 3 0 0 45 64 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 68 - U - - MR 129 128 3 131 3 1 1 46 64 -8.541 -0.016 -6.859 -0.740 -1.210 -1.775 1.420 D 130 128 3 131 3 0 0 44 63 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 67 - U - - MR 132 131 3 134 3 1 1 45 63 -8.541 -0.016 -6.859 -0.693 -0.471 -1.077 1.128 D 133 131 3 134 3 0 0 43 62 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 66 - g - - MR 135 134 3 137 3 1 1 44 62 -8.541 -0.016 -6.859 -0.213 -1.347 0.983 -0.382 D 136 134 3 137 3 0 0 42 61 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 65 - A - - MR 138 137 3 140 3 1 1 43 61 -8.541 -0.016 -6.859 1.793 -2.774 -2.366 -2.357 D 139 137 3 140 3 0 0 41 60 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 64 - G - - MR 141 140 3 143 3 1 1 42 60 -8.541 -0.016 -6.859 -1.999 -3.280 1.803 -2.667 D 142 140 3 143 3 0 0 40 59 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 63 - A - - MR 144 143 3 146 3 1 1 41 59 -8.541 -0.016 -6.859 1.793 -2.774 -2.366 -2.357 D 145 143 3 146 3 0 0 39 58 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 62 - G - - MR 147 146 3 149 3 1 1 40 58 -8.541 -0.016 -6.859 -1.999 -3.280 1.803 -2.667 D 148 146 3 149 3 0 0 38 57 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 61 - G - - MR 150 149 3 152 3 1 1 39 57 -8.541 -0.016 -6.859 -1.999 -3.280 1.803 -2.667 D 151 149 3 152 3 0 0 37 56 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 60 - A - - MR 153 152 3 155 3 1 1 38 56 -8.541 -0.016 -6.859 1.793 -2.774 -2.366 -2.357 D 154 152 3 155 3 0 0 36 55 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 59 - C - - MR 156 155 3 158 3 1 1 37 55 -8.541 -0.140 -3.475 -2.229 1.733 -3.060 -1.545 D 157 155 3 158 3 0 0 35 54 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 58 - C - - MR 159 158 3 161 3 1 1 36 54 -8.419 -0.018 -6.736 -1.140 1.265 -1.968 -0.173 D 160 158 3 161 3 0 0 34 53 -7.214 -0.676 -1.444 IR 161 161 3 161 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 57 - U - - MR 162 161 3 164 3 1 1 35 53 -8.541 -0.016 -6.859 -0.740 -1.210 -1.775 1.420 D 163 161 3 164 3 0 0 33 52 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 55 ] - 56 - A - - MR 165 164 3 167 3 1 1 34 52 -8.541 -0.061 -4.693 1.793 -2.774 -2.366 -2.357 D 166 164 3 167 3 0 0 32 51 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 55 - A - - MR 168 167 3 170 5 1 1 33 51 -7.227 -0.036 -7.042 -7.254 -8.146 1.777 -2.679 -2.281 -2.253 D 169 167 3 170 5 0 0 31 50 -5.566 -0.587 -3.192 -4.623 -2.617 IR 170 170 3 170 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 37 54 C G - - MP 171 170 3 175 6 2 2 32 50 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -4.530 -4.491 -4.216 -0.678 -2.896 -4.622 3.488 -3.708 -4.256 -0.472 -4.531 -2.461 0.954 -4.581 -0.580 -3.084 ML 172 170 3 175 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 38 53 C G - - MP 177 176 6 181 6 2 2 30 48 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -4.988 -4.931 -4.601 -1.128 -3.230 -4.955 3.666 -4.084 -4.669 -0.942 -4.879 -2.886 0.235 -5.027 -0.951 -3.495 ML 178 176 6 181 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 39 52 C G - - MP 183 182 6 187 6 2 2 28 46 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -4.988 -4.931 -4.601 -1.128 -3.230 -4.955 3.666 -4.084 -4.669 -0.942 -4.879 -2.886 0.235 -5.027 -0.951 -3.495 ML 184 182 6 187 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 40 51 G C - - MP 189 188 6 193 6 2 2 26 44 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -5.132 -3.282 -5.279 -0.067 -5.781 -4.842 -1.048 -5.541 -4.573 3.719 -4.884 -0.999 -1.423 -4.721 -3.107 -4.149 ML 190 188 6 193 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 41 50 G C - - MP 195 194 6 199 6 2 2 24 42 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -3.946 -2.804 -3.899 0.726 -4.080 -4.378 0.461 -4.180 -3.941 3.247 -4.298 -0.498 0.734 -3.822 -1.554 -2.825 ML 196 194 6 199 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 42 49 U A - - MP 201 200 6 205 4 2 2 22 40 -7.160 -7.368 -0.046 -5.782 -4.676 -4.510 -4.459 -0.774 -3.303 -4.977 1.033 -4.030 -4.460 -0.582 -4.808 -2.394 3.518 -4.806 -0.967 -3.229 ML 202 200 6 205 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 43 - U - - - ML 207 206 6 209 3 1 1 19 37 -8.163 -0.018 -6.817 -1.489 -1.247 -2.230 1.590 D 208 206 6 209 3 0 0 18 37 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 44 - U - - - ML 210 209 3 212 3 1 1 17 36 -8.163 -0.018 -6.817 -0.801 -1.089 -0.869 1.268 D 211 209 3 212 3 0 0 17 35 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 45 - G - - - ML 213 212 3 215 3 1 1 16 35 -8.163 -0.018 -6.817 -1.279 -2.762 1.687 -2.177 D 214 212 3 215 3 0 0 16 34 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 46 - C - - - ML 216 215 3 218 3 1 1 15 33 -8.163 -0.186 -3.091 -1.560 1.491 -2.404 -0.599 D 217 215 3 218 3 0 0 14 33 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 47 - A - - - ML 219 218 3 221 3 1 1 13 31 -7.997 -0.195 -3.032 1.733 -2.438 -2.063 -1.987 D 220 218 3 221 3 0 0 13 31 -7.279 -1.977 -0.435 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 48 - C - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 -1.046 1.275 -1.856 -0.288 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrD_leader ACC RF02373 DESC PyrD leader LENG 74 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 23:31:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02373/CM NSEQ 27 EFFN 2.785034 CKSUM 2806110341 STATS LOCAL MSV -8.8323 0.71880 STATS LOCAL VITERBI -9.2646 0.71880 STATS LOCAL FORWARD -3.7421 0.71880 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32420 1.39295 1.52047 1.32039 1.38629 1.38629 1.38629 1.38629 0.05545 4.04828 3.31086 1.46634 0.26236 0.00000 * 1 0.12962 3.40492 3.11303 3.12602 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03623 4.02907 4.02907 1.46634 0.26236 1.40868 0.28033 2 2.76643 2.70404 3.28968 0.18283 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03623 4.02907 4.02907 1.46634 0.26236 0.67125 0.71553 3 2.80235 2.73399 3.32680 0.17618 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 4 3.09246 0.15793 3.66712 2.58824 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 5 2.42528 0.27270 3.17719 2.22081 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 6 1.45850 0.65646 2.54290 1.77141 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 7 1.46719 2.13497 2.41360 0.57681 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 8 2.80235 2.73399 3.32680 0.17618 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 9 2.80235 2.73399 3.32680 0.17618 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 10 1.69139 1.22774 1.70029 1.07836 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 11 1.19513 1.81976 1.32851 1.30785 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 12 1.56690 1.58994 1.15287 1.30327 12 g - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 13 1.45970 1.30462 1.46333 1.32820 13 c - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 14 1.28572 1.39703 1.70648 1.22175 14 u - - : 1.38629 1.38629 1.38629 1.38629 0.05447 3.33661 4.04828 0.79816 0.59812 1.09861 0.40547 15 1.61005 1.17540 1.36204 1.44694 16 c - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 16 1.48483 1.94951 0.80362 1.69603 17 g - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 17 1.02243 1.67747 1.53758 1.43325 18 a - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 18 1.38162 1.78114 1.08170 1.42145 19 g - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 19 0.71750 1.74058 2.21525 1.48066 20 a - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 20 2.80235 2.73399 3.32680 0.17618 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 21 1.41553 0.94279 1.78347 1.61139 22 c - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 22 1.69921 1.68627 0.73472 1.88174 23 g - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 23 1.52130 0.61774 2.58136 1.79131 24 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 24 0.98244 1.58674 1.79290 1.36832 25 a - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 25 1.76389 1.08243 1.16448 1.72729 26 c - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 26 0.12450 3.44258 3.14716 3.16763 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 27 2.80235 2.73399 3.32680 0.17618 28 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 28 0.12450 3.44258 3.14716 3.16763 29 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 29 0.12450 3.44258 3.14716 3.16763 30 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 30 2.80235 2.73399 3.32680 0.17618 31 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 31 0.39646 2.05929 2.47436 2.15813 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 32 1.77513 0.69234 1.90159 1.71033 33 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 33 1.86453 1.75893 0.62090 1.99997 34 G - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 34 1.86531 0.75462 1.77852 1.57952 35 c - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 35 2.30673 0.39272 2.60994 1.88612 36 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 36 3.05412 0.31669 2.84561 1.79468 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 37 3.38704 0.19626 3.19580 2.26857 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 38 3.39463 0.19558 3.19966 2.26997 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 39 2.71312 3.43931 0.14228 3.37533 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 40 2.13739 2.40641 0.42165 1.99556 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 41 3.20181 2.08236 2.97997 0.24350 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 42 2.51444 2.31066 3.03011 0.25931 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 43 2.00406 2.19735 2.01156 0.47750 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 44 2.35301 3.41889 0.19452 3.01718 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 45 2.57602 0.32096 3.16706 1.85570 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.16460 4.04828 2.00758 1.46634 0.26236 1.09861 0.40547 46 0.16203 3.19813 2.92625 2.89776 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.17635 3.92401 1.95251 1.46634 0.26236 1.40839 0.28042 47 2.19368 0.46340 2.76198 1.62870 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04466 3.82412 3.82412 1.46634 0.26236 0.14835 1.98145 48 0.27599 3.16778 1.91906 2.94998 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 49 2.15849 0.47445 2.23146 1.86497 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 50 3.56933 0.16899 3.28078 2.41119 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 51 2.55061 3.37146 0.16787 3.16620 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 52 2.55159 3.37290 0.16764 3.16787 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 53 2.03011 3.02125 0.27259 2.83815 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.07176 4.04828 2.96045 1.46634 0.26236 1.09861 0.40547 54 0.13398 3.37403 3.08507 3.09189 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03682 4.01334 4.01334 1.46634 0.26236 0.51515 0.90984 55 0.12450 3.44258 3.14716 3.16763 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 56 1.94825 2.29003 2.69458 0.37303 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.13678 4.04828 2.20377 1.46634 0.26236 1.09861 0.40547 57 2.25870 0.47432 2.84040 1.53804 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.03924 3.95074 3.95074 1.46634 0.26236 0.27475 1.42612 58 3.09246 0.15793 3.66712 2.58824 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 59 0.12450 3.44258 3.14716 3.16763 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 60 2.90633 3.81077 0.11731 3.38479 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 61 2.90633 3.81077 0.11731 3.38479 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 62 0.12450 3.44258 3.14716 3.16763 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 63 2.90633 3.81077 0.11731 3.38479 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 64 0.12450 3.44258 3.14716 3.16763 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 65 1.55923 2.36759 0.67564 1.67578 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 66 1.91488 1.72718 2.15912 0.58084 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 67 1.94825 2.29003 2.69458 0.37303 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 68 3.09246 0.15793 3.66712 2.58824 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 69 0.12450 3.44258 3.14716 3.16763 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 70 2.80235 2.73399 3.32680 0.17618 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 71 2.90633 3.81077 0.11731 3.38479 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 72 2.80235 2.73399 3.32680 0.17618 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 73 0.41617 2.45434 2.46197 1.77641 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.03553 4.04828 4.04828 1.46634 0.26236 1.09861 0.40547 74 2.40343 0.41654 2.99695 1.60780 75 C - - : 1.38629 1.38629 1.38629 1.38629 0.01792 4.03068 * 1.46634 0.26236 0.00000 * //