INFERNAL1/a [1.1.5 | Sep 2023] NAME Betaproteobacteria_toxic_sRNA ACC RF02278 DESC Betaproteobacteria toxic small RNA STATES 201 NODES 54 CLEN 64 W 85 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 04:03:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02278/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 51 EFFN 4.186707 CKSUM 2729869815 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.00 NC 49.90 EFP7GF -12.8457 0.71923 ECMLC 0.60581 -8.77236 1.34481 1600000 550839 0.002178 ECMGC 0.37613 -19.74179 -5.04960 1600000 100472 0.003981 ECMLI 0.57813 -7.86757 2.45161 1600000 467860 0.002565 ECMGI 0.41420 -14.39231 -1.56134 1600000 81311 0.004919 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 85 108 -7.663 -7.870 -0.032 -6.284 IL 1 1 2 1 4 1 21 88 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 87 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 20 85 108 -8.638 -0.013 -7.292 -1.709 -1.491 -2.200 1.642 D 4 2 3 5 3 0 15 83 107 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 86 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 84 107 -8.638 -0.013 -7.292 -2.901 -4.281 1.901 -3.639 D 7 5 3 8 3 0 15 82 106 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 85 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 83 106 -8.638 -0.013 -7.292 -2.760 -2.548 -3.535 1.846 D 10 8 3 11 3 0 14 81 105 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 84 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 82 105 -8.638 -0.013 -7.292 -3.326 1.872 -4.104 -2.462 D 13 11 3 14 3 0 13 80 104 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 83 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 16 81 104 -8.638 -0.013 -7.292 -2.760 -2.548 -3.535 1.846 D 16 14 3 17 3 0 13 79 103 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 82 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 15 80 103 -8.638 -0.013 -7.292 -3.326 1.872 -4.104 -2.462 D 19 17 3 20 3 0 12 78 102 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 81 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 14 79 102 -8.993 -0.057 -4.770 -3.326 1.872 -4.104 -2.462 D 22 20 3 23 3 0 12 77 101 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 14 79 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 76 - u - - MR 24 23 3 26 3 1 14 78 101 -8.948 -0.012 -7.266 -0.717 -0.024 -1.096 0.956 D 25 23 3 26 3 0 10 76 100 -6.869 -0.931 -1.099 IR 26 26 3 26 3 1 13 78 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 75 - U - - MR 27 26 3 29 3 1 13 77 100 -8.993 -0.012 -7.311 -1.384 -1.308 -2.359 1.594 D 28 26 3 29 3 0 9 75 98 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 77 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 74 - U - - MR 30 29 3 32 3 1 12 76 99 -8.993 -0.012 -7.311 -1.560 -1.219 -2.257 1.596 D 31 29 3 32 3 0 9 74 98 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 76 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 73 - U - - MR 33 32 3 35 3 1 11 75 98 -8.993 -0.012 -7.311 -1.547 -1.876 -2.623 1.688 D 34 32 3 35 3 0 8 73 97 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 75 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 72 - U - - MR 36 35 3 38 3 1 10 74 97 -8.993 -0.012 -7.311 -1.750 -1.775 -2.025 1.662 D 37 35 3 38 3 0 8 72 96 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 10 74 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 71 - U - - MR 39 38 3 41 3 1 9 73 96 -8.993 -0.012 -7.311 -1.346 -1.286 -2.335 1.584 D 40 38 3 41 3 0 7 71 95 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 9 73 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 70 - U - - MR 42 41 3 44 2 1 8 72 95 -9.135 -0.003 -1.677 -1.401 -2.179 1.627 D 43 41 3 44 2 0 7 71 94 -4.432 -0.068 IR 44 44 3 44 2 1 8 72 96 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 117 0 7 71 94 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 40 62 -0.034 -7.238 -6.645 -7.286 [ MATP 17 ] 8 33 U A - - MP 47 46 1 51 6 2 2 40 62 -9.423 -9.362 -0.017 -8.139 -8.419 -8.814 -6.015 -5.861 -5.636 -2.082 -4.269 -6.029 0.058 -5.065 -5.631 -2.013 -5.918 -3.723 3.794 -6.063 -1.902 -4.156 ML 48 46 1 51 6 1 1 39 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 39 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 36 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 40 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 40 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 9 32 C G - - MP 53 52 6 57 6 2 2 38 60 -9.423 -9.362 -0.017 -8.139 -8.419 -8.814 -6.049 -6.081 -5.463 -2.250 -3.934 -5.676 3.836 -4.902 -5.608 -2.152 -5.660 -4.101 -0.626 -6.013 -1.724 -4.414 ML 54 52 6 57 6 1 1 37 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 37 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 34 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 38 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 38 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 10 31 C G - - MP 59 58 6 63 6 2 2 36 58 -9.423 -9.362 -0.017 -8.139 -8.419 -8.814 -5.390 -5.432 -4.914 -1.567 -3.425 -5.199 3.697 -4.307 -4.986 -1.433 -5.169 -3.448 0.455 -5.363 -1.128 -3.789 ML 60 58 6 63 6 1 1 35 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 35 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 32 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 36 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 36 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 11 30 A U - - MP 65 64 6 69 6 2 2 34 56 -9.423 -9.362 -0.037 -5.847 -8.419 -8.814 -5.088 -3.869 -4.911 3.786 -6.032 -7.280 -1.650 -4.866 -4.874 -0.341 -5.478 -1.194 -2.046 -6.180 -3.579 -3.754 ML 66 64 6 69 6 1 1 33 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 33 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 30 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 34 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 34 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 29 c g - - MP 71 70 6 75 6 2 2 32 54 -9.403 -9.342 -0.133 -8.119 -3.653 -8.794 -3.917 -3.819 -3.873 0.358 -2.861 -4.557 2.793 -3.534 -3.837 0.247 -4.288 -1.687 2.187 -4.097 -0.107 -2.683 ML 72 70 6 75 6 1 1 31 53 -6.547 -6.893 -1.608 -0.757 -6.743 -4.273 0.820 -0.704 -0.428 -0.189 MR 73 70 6 75 6 1 1 31 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 28 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 32 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 32 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 28 c g - - MP 77 76 6 81 6 2 2 30 53 -9.288 -9.227 -0.108 -8.004 -3.997 -8.679 -3.304 -2.836 -3.389 0.709 -2.949 -4.173 2.483 -3.355 -3.346 1.411 -3.819 1.271 0.979 -3.546 -0.613 -2.280 ML 78 76 6 81 6 1 1 29 51 -6.547 -6.893 -0.959 -1.302 -6.743 -4.273 0.039 -0.395 -0.558 0.616 MR 79 76 6 81 6 1 1 29 51 -8.048 -3.375 -1.105 -6.755 -1.344 -4.969 0.098 -0.619 -0.202 0.495 D 80 76 6 81 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 30 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 30 52 -2.538 -0.446 -6.049 -4.217 -5.323 0.000 0.000 0.000 0.000 [ MATP 23 ] 14 26 u a - - MP 83 82 6 87 6 2 2 29 51 -9.315 -9.255 -0.159 -8.031 -3.397 -8.706 -2.497 -2.621 -2.635 0.639 -0.788 -3.446 1.958 0.262 -2.668 0.644 -3.209 -1.002 2.134 -2.796 0.044 -1.752 ML 84 82 6 87 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 27 49 -8.013 -6.742 -2.651 -6.721 -0.515 -3.077 -0.126 -0.683 0.147 0.437 D 86 82 6 87 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 28 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 25 C G - - MP 89 88 6 93 4 2 2 27 49 -7.122 -7.329 -0.047 -5.743 -3.263 -3.280 -3.301 0.290 -0.810 -4.027 3.029 -3.186 -3.312 0.435 -3.790 -1.400 1.277 -3.500 -0.335 -1.490 ML 90 88 6 93 4 1 1 27 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 26 48 -6.576 -5.605 -0.329 -2.533 0.520 -0.795 -1.002 0.576 D 92 88 6 93 4 0 0 25 47 -4.878 -4.559 -2.575 -0.404 IL 93 93 5 93 4 1 1 28 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 16 - U - - - ML 95 94 6 97 3 1 1 24 46 -8.604 -0.013 -7.258 -2.149 -1.668 -2.898 1.734 D 96 94 6 97 3 0 0 23 45 -6.597 -1.042 -0.988 IL 97 97 3 97 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - C - - - ML 98 97 3 100 3 1 1 23 45 -8.638 -0.013 -7.292 -3.326 1.872 -4.104 -2.462 D 99 97 3 100 3 0 0 22 44 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 25 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - C - - - ML 101 100 3 103 3 1 1 22 44 -8.638 -0.091 -4.094 -1.897 1.679 -3.024 -1.302 D 102 100 3 103 3 0 0 21 43 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - U - - - ML 104 103 3 106 3 1 1 21 43 -8.561 -0.046 -5.137 -1.431 -1.109 -1.887 1.534 D 105 103 3 106 3 0 0 19 41 -6.998 -2.511 -0.292 IL 106 106 3 106 3 1 1 23 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - C - - - ML 107 106 3 109 3 1 1 20 42 -2.785 -0.438 -3.099 -2.560 1.753 -3.395 -1.457 D 108 106 3 109 3 0 0 16 38 -7.226 -1.334 -0.745 IL 109 109 3 109 3 1 1 22 44 -1.206 -0.894 -5.126 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - c - - - ML 110 109 3 112 3 1 1 13 31 -8.421 -0.015 -7.075 -0.065 0.420 -1.370 0.400 D 111 109 3 112 3 0 0 12 31 -7.789 -0.368 -2.181 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - U - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 0.105 -1.300 -1.643 1.136 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 117 45 1 118 3 0 0 46 70 -8.638 -0.013 -7.292 IL 118 118 2 118 3 1 1 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 119 118 2 121 3 1 1 46 70 -8.638 -0.013 -7.292 -2.760 -2.548 -3.535 1.846 D 120 118 2 121 3 0 0 44 68 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 48 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 122 121 3 124 3 1 1 45 69 -8.638 -0.013 -7.292 -1.569 -1.885 -2.636 1.692 D 123 121 3 124 3 0 0 43 67 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 47 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - c - - - ML 125 124 3 127 5 1 1 44 68 -2.094 -0.409 -7.512 -7.725 -8.616 0.091 0.494 -1.085 0.078 D 126 124 3 127 5 0 0 42 66 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 44 68 -2.028 -0.491 -5.332 -7.165 -6.438 0.000 0.000 0.000 0.000 [ MATP 37 ] 40 69 a u - - MP 128 127 3 132 6 2 2 43 66 -9.423 -9.362 -0.032 -6.170 -8.419 -8.814 -3.589 -2.733 -3.604 2.724 -3.901 -4.480 0.634 -3.901 -3.706 2.137 -4.163 -0.205 0.427 -3.718 -1.492 -2.547 ML 129 127 3 132 6 1 1 41 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 41 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 38 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 42 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 42 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 41 68 G C - - MP 134 133 6 138 6 2 2 41 64 -9.408 -9.347 -0.017 -8.124 -8.404 -8.799 -3.827 -2.685 -3.743 1.356 -4.272 -4.372 1.053 -4.193 -3.975 3.061 -4.318 -0.216 0.051 -3.672 -1.642 -2.689 ML 135 133 6 138 6 1 1 39 62 -6.478 -6.824 -1.538 -0.807 -6.674 -4.203 0.222 -0.654 0.377 -0.153 MR 136 133 6 138 6 1 1 39 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 36 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 40 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 40 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 42 67 C G - - MP 140 139 6 144 6 2 2 39 62 -6.792 -9.347 -0.028 -8.124 -8.404 -8.799 -5.020 -4.966 -4.694 -1.074 -3.339 -5.100 3.616 -4.167 -4.729 -0.310 -4.993 -2.873 0.255 -5.069 -0.608 -3.536 ML 141 139 6 144 6 1 1 37 60 -6.478 -6.824 -1.538 -0.807 -6.674 -4.203 0.115 0.180 -0.566 0.149 MR 142 139 6 144 6 1 1 37 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 34 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 38 62 -2.705 -2.242 -0.886 -4.624 -5.400 -5.060 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 38 61 -2.486 -0.465 -5.997 -4.165 -5.271 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 65 C G - - MP 146 145 6 150 6 2 2 37 60 -9.408 -9.347 -0.017 -8.124 -8.404 -8.799 -4.895 -4.731 -4.614 -0.855 -3.329 -5.082 3.575 -4.114 -4.624 0.167 -4.921 -2.550 0.305 -4.990 -0.993 -3.439 ML 147 145 6 150 6 1 1 35 58 -6.478 -6.824 -1.028 -1.233 -6.674 -4.203 0.102 -0.378 -0.488 0.530 MR 148 145 6 150 6 1 1 35 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 32 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 36 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 36 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 64 C G - - MP 152 151 6 156 6 2 2 35 58 -9.423 -9.362 -0.017 -8.139 -8.419 -8.814 -4.648 -4.464 -4.415 0.489 -3.181 -4.935 3.472 -3.926 -4.401 -0.429 -4.742 -2.264 0.498 -4.770 -0.824 -3.223 ML 153 151 6 156 6 1 1 33 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 33 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 30 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 34 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 34 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 63 G C - - MP 158 157 6 162 6 2 2 33 56 -9.423 -9.362 -0.017 -8.139 -8.419 -8.814 -3.631 -2.538 -3.544 1.588 -4.208 -4.221 0.550 -2.743 -3.847 3.002 -4.188 0.211 0.072 -3.482 -1.605 -2.528 ML 159 157 6 162 6 1 1 31 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 32 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 62 g c - - MP 164 163 6 168 6 2 2 31 54 -9.423 -9.362 -0.017 -8.139 -8.419 -8.814 -3.039 -2.727 -3.117 1.594 -2.849 -3.910 1.918 -3.252 -3.190 1.977 -3.689 -0.381 1.297 -3.207 -0.295 -2.116 ML 165 163 6 168 6 1 1 30 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 29 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 27 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 30 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 30 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 48 61 c g - - MP 170 169 6 174 4 2 2 29 52 -7.663 -7.870 -0.032 -6.284 -2.037 -1.539 -2.213 1.418 -1.293 -3.056 1.712 -1.996 -2.274 1.548 -2.834 -0.484 1.608 -2.348 -0.212 -1.414 ML 171 169 6 174 4 1 1 28 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 28 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 27 50 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 30 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 29 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - c - - - ML 176 175 6 178 3 1 1 27 50 -8.638 -0.013 -7.292 -0.430 0.842 -1.151 0.021 D 177 175 6 178 3 0 0 25 48 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - c - - - ML 179 178 3 181 3 1 1 26 49 -8.638 -0.141 -3.465 -0.400 0.920 -1.432 -0.030 D 180 178 3 181 3 0 0 24 47 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - a - - - ML 182 181 3 184 3 1 1 25 48 -8.511 -0.014 -7.165 0.447 -0.397 -0.383 0.151 D 183 181 3 184 3 0 0 22 45 -7.339 -2.086 -0.399 IL 184 184 3 184 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - c - - - ML 185 184 3 187 3 1 1 24 47 -2.667 -0.777 -1.949 0.079 0.188 -0.275 -0.033 D 186 184 3 187 3 0 0 19 42 -7.192 -2.705 -0.252 IL 187 187 3 187 3 1 1 25 48 -1.139 -0.945 -5.236 0.000 0.000 0.000 0.000 [ MATL 49 ] 57 - a - - - ML 188 187 3 190 3 1 1 16 34 -8.115 -0.019 -6.769 0.676 -0.494 -0.463 -0.048 D 189 187 3 190 3 0 0 15 33 -8.630 -0.538 -1.697 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 58 - u - - - ML 191 190 3 193 3 1 1 14 33 -8.535 -0.014 -7.189 0.054 0.021 -0.297 0.180 D 192 190 3 193 3 0 0 14 32 -7.186 -1.077 -0.946 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 59 - u - - - ML 194 193 3 196 3 1 1 13 31 -8.601 -0.013 -7.255 -0.363 -0.269 0.127 0.379 D 195 193 3 196 3 0 0 13 31 -6.630 -1.008 -1.021 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 60 - g - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 -0.105 -0.899 0.892 -0.561 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Betaproteobacteria_toxic_sRNA ACC RF02278 DESC Betaproteobacteria toxic small RNA LENG 64 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 04:03:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02278/CM NSEQ 51 EFFN 7.934509 CKSUM 2729869815 STATS LOCAL MSV -8.1486 0.71923 STATS LOCAL VITERBI -9.0507 0.71923 STATS LOCAL FORWARD -3.5182 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.90882 1.21207 1.53890 1.08014 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 0.00000 * 1 3.11988 2.75417 3.27053 0.15760 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 2 4.11361 5.14567 0.03252 4.62316 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 3 4.09782 3.85576 4.64893 0.04850 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 4 4.50823 0.04002 4.92595 3.86555 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 5 4.09782 3.85576 4.64893 0.04850 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 6 4.50823 0.04002 4.92595 3.86555 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 7 4.50823 0.04002 4.92595 3.86555 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 8 5.05519 3.71021 4.99307 0.03836 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 9 4.88475 0.04417 4.82486 3.58936 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 10 4.22020 0.12789 4.10092 2.42144 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 11 0.05796 4.66963 3.33235 4.48911 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 12 2.45728 0.73903 2.62412 1.00991 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.20373 4.72285 1.74052 1.46634 0.26236 1.09861 0.40547 13 2.45665 0.82934 1.05788 2.03445 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.17984 4.54069 1.87124 1.46634 0.26236 0.35250 1.21378 14 2.47042 0.88466 2.33868 0.90105 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.28050 4.54966 1.45233 1.46634 0.26236 3.03920 0.04906 15 2.64280 0.44915 2.44905 1.58820 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.02760 4.29676 4.29676 1.46634 0.26236 0.12713 2.12546 16 3.47888 2.85461 3.99393 0.11300 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01844 4.69567 4.69567 1.46634 0.26236 0.40405 1.10146 17 4.50823 0.04002 4.92595 3.86555 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 18 3.12568 0.13532 4.09124 2.71906 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08170 4.72285 2.66551 1.46634 0.26236 1.09861 0.40547 19 2.92971 2.39842 3.02556 0.21419 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 4.66026 3.35542 1.46634 0.26236 2.28495 0.10734 20 3.92349 0.09538 4.43047 2.82533 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.38041 1.72945 1.97301 0.73158 0.65614 0.81546 0.58417 21 1.49267 0.97614 2.63885 1.11773 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02146 4.54537 4.54537 1.46634 0.26236 0.09863 2.36528 22 1.31980 2.73851 2.99704 0.48093 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04563 4.72285 3.33229 1.46634 0.26236 1.09861 0.40547 23 1.44944 2.50417 0.65877 1.79536 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.01844 4.69567 4.69567 1.46634 0.26236 0.40405 1.10146 24 0.98758 2.44326 1.18300 1.45121 26 a - - > 1.38629 1.38629 1.38629 1.38629 0.07927 3.30189 3.23413 0.42827 1.05451 1.09861 0.40547 25 2.15824 1.97844 0.82753 1.17422 28 g - - > 1.38629 1.38629 1.38629 1.38629 0.01851 4.69187 4.69187 1.46634 0.26236 1.86120 0.16899 26 1.13699 2.82139 0.63760 2.39542 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01851 4.69187 4.69187 1.46634 0.26236 0.37247 1.16805 27 4.68147 3.74982 4.47370 0.04520 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 28 2.60975 4.23750 0.11295 3.97325 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 29 3.84047 4.93906 0.03880 4.66538 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 30 0.04658 5.10921 3.50717 4.65774 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 31 4.09782 3.85576 4.64893 0.04850 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 32 2.80957 3.19849 3.78542 0.13211 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 33 1.34824 0.93200 2.29324 1.40405 36 c - - - 1.38629 1.38629 1.38629 1.38629 0.36924 1.20446 4.72285 0.37486 1.16279 1.09861 0.40547 34 0.63451 2.59115 1.18114 2.43110 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 35 1.73841 2.01521 0.48084 2.62222 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 36 3.81910 0.16788 3.05332 2.46051 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.03488 3.67341 4.72285 0.59571 0.80112 1.09861 0.40547 37 3.71620 0.18698 2.64181 2.59048 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 38 2.40914 0.22051 3.45362 2.57221 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 39 1.56057 2.41286 0.46858 2.59650 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 40 1.47535 1.34133 1.20482 1.56038 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 41 1.47977 1.38428 1.39641 1.29346 48 u - - < 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 42 1.84492 0.66852 2.32857 1.46076 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 43 1.79977 0.61474 2.62718 1.50690 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.12291 4.72285 2.23713 1.46634 0.26236 1.09861 0.40547 44 1.04681 1.67383 1.65505 1.30809 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01991 4.61985 4.61985 1.46634 0.26236 1.56581 0.23435 45 1.37464 1.16125 1.55196 1.50443 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.68950 1.65132 1.18294 0.78653 0.60775 2.49179 0.08639 46 0.85747 1.75199 1.73883 1.48452 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02789 4.28668 4.28668 1.46634 0.26236 0.29780 1.35653 47 1.39327 1.30851 1.56795 1.29813 58 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01952 4.63933 4.63933 1.46634 0.26236 0.58061 0.81997 48 1.82161 1.55482 1.20594 1.11597 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01849 4.69316 4.69316 1.46634 0.26236 0.38256 1.14605 49 1.56317 2.10337 0.62808 2.00346 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 50 1.38215 1.47687 1.33013 1.36192 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 51 1.80615 1.34056 1.19250 1.30728 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 52 2.86486 0.57259 2.35639 1.25812 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 53 2.85751 3.66187 0.19867 2.33215 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04144 4.72285 3.45129 1.46634 0.26236 1.09861 0.40547 54 2.92162 2.71328 0.16252 3.51190 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.03571 3.65033 4.69978 0.59571 0.80112 1.71676 0.19802 55 2.95065 3.14596 0.12864 3.67387 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01836 4.69978 4.69978 1.46634 0.26236 1.71676 0.19802 56 2.90986 0.54114 1.92255 1.52695 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.01836 4.69978 4.69978 1.46634 0.26236 0.44519 1.02361 57 2.61551 1.31904 2.44824 0.55681 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 58 3.10007 2.66024 3.26457 0.16628 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 59 2.67564 2.55348 3.55202 0.19278 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 60 3.17646 3.11590 3.04834 0.14330 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 61 2.78885 3.19294 3.77777 0.13401 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 62 2.96364 2.47357 3.41195 0.18499 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.72285 4.72285 1.46634 0.26236 1.09861 0.40547 63 2.71183 2.57160 3.56735 0.18761 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.05615 4.72285 3.08533 1.46634 0.26236 1.09861 0.40547 64 2.17325 1.35838 2.26609 0.64360 76 U - - : 1.38629 1.38629 1.38629 1.38629 0.00936 4.67606 * 1.46634 0.26236 0.00000 * //